Basic Information

Insect: Nicrophorus vespilloides
Gene Symbol: RREB1
Assembly: GCA_001412225.1
Location: NW:54264-81260[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.023 1.5 8.8 3.2 1 21 110 130 110 132 0.95

2 16 5.1e-05 0.0035 17.1 0.5 1 23 145 167 145 167 0.98

3 16 3.3e-06 0.00023 20.9 4.3 1 23 173 195 173 195 0.99

4 16 0.9 61 3.8 0.1 1 23 251 275 251 275 0.84

5 16 5.2 3.5e+02 1.4 5.2 2 23 281 303 281 303 0.86

6 16 1.9 1.3e+02 2.7 0.9 1 20 351 370 351 372 0.82

7 16 0.0067 0.46 10.5 0.2 1 23 500 522 500 522 0.98

8 16 4.7e-06 0.00032 20.4 0.8 1 23 531 553 531 553 0.99

9 16 0.00016 0.011 15.6 2.1 1 23 559 582 559 582 0.97

10 16 0.00041 0.028 14.3 2.8 1 23 923 946 923 946 0.96

11 16 0.00029 0.02 14.8 0.4 2 23 1168 1189 1167 1189 0.97

12 16 0.073 5 7.2 6.3 1 23 1195 1218 1195 1218 0.97

13 16 0.0024 0.17 11.9 2.3 1 23 1245 1269 1245 1269 0.95

14 16 2.5 1.7e+02 2.4 3.6 1 23 1323 1346 1323 1346 0.89

15 16 0.0096 0.66 10.0 0.4 3 23 1393 1413 1391 1413 0.93

16 16 0.0043 0.3 11.1 5.9 1 23 1419 1441 1419 1441 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.023	1.5	8.8	3.2	1	21	110	130	110	132	0.95
2	16	5.1e-05	0.0035	17.1	0.5	1	23	145	167	145	167	0.98
3	16	3.3e-06	0.00023	20.9	4.3	1	23	173	195	173	195	0.99
4	16	0.9	61	3.8	0.1	1	23	251	275	251	275	0.84
5	16	5.2	3.5e+02	1.4	5.2	2	23	281	303	281	303	0.86
6	16	1.9	1.3e+02	2.7	0.9	1	20	351	370	351	372	0.82
7	16	0.0067	0.46	10.5	0.2	1	23	500	522	500	522	0.98
8	16	4.7e-06	0.00032	20.4	0.8	1	23	531	553	531	553	0.99
9	16	0.00016	0.011	15.6	2.1	1	23	559	582	559	582	0.97
10	16	0.00041	0.028	14.3	2.8	1	23	923	946	923	946	0.96
11	16	0.00029	0.02	14.8	0.4	2	23	1168	1189	1167	1189	0.97
12	16	0.073	5	7.2	6.3	1	23	1195	1218	1195	1218	0.97
13	16	0.0024	0.17	11.9	2.3	1	23	1245	1269	1245	1269	0.95
14	16	2.5	1.7e+02	2.4	3.6	1	23	1323	1346	1323	1346	0.89
15	16	0.0096	0.66	10.0	0.4	3	23	1393	1413	1391	1413	0.93
16	16	0.0043	0.3	11.1	5.9	1	23	1419	1441	1419	1441	0.98

Sequence Information

Coding Sequence: ATGGAATCAGTAAAGCAAATGGGTTGTCCGTTATCATCTGGGCACGCGTCTCCATCGTCCGGGACACATCTTATTGGAATGTTGGACTTTAGTGATTTCGAAATGCAAGGTGTACTCTGCATGCCCCCAAGACAATTCGGCTGCGGCTCACAGGAAAAAATTGATGaaACAAGGATGGATGAACCATTAACCAAAGAGATCAACCAAAGTGATTCGGGTATTTTCTCGGCCACAAGCAACACCACCTGCACGGAGGAGACTTCTTGCAGGACGCACGACAATGATTCCGGCGATAACAGATCGGATTGCAGTTCTCCggataaaaaatacttttgtcCGATCTGCGAGACGATGCTCACCTCCCAGCATGAATTCACACTTCACATAAGGTGTCACAATAACGATACGGAGACGCAAGATCCGGAGAAGGGTTACACCTGCAAGATCTGCTTCAAAGTGTTGAGCTCTAGTTCGAGTCTGGATAGGCACGTTTTGGTGCACAGCGGCGAGAGACCATTCACGTGCAAATATTGCGGTGACACGTTCACGACGAACGGCAACATGCATAGACATATGAGGACGCATAAGACGGAGAACTATGAATCGGATGGAAGTACCGACAGCAATACCAGTTCTGGTTCAAAAGGAATCgaattcaacaataataagaTCGATCGTTACGAAGGCAAAAGGAAGCTGGAAGATGACAGTTACAAATTGCCGAGGAAACGTCCGCACCTGGAGGACACCTTCAAGTGTTTGGTCTGCGATCGTGACGACTTCAGCACTCCGAAAGCTCTCGAAATGCATCTGGAAGATAACCATCCCGATTATCCTGCTAAATGTCACCAGTGCAATCAGATCTTCAAGAACCACAAGATTCTCAATTTTCATAGAAACACCGTCCACGTCGATGGAGAGAACGGCAAGAAGAGTTCCGTCGTCGGTTTCAAAGATTTAACGTTTGTCGACTTCAGCAGCGAGAAATTTCCGCACATCGCGCGCGCCGAATGCGAGAAGAATCTGCACAAGGCAACTCCCGGTCTGAAGTTTCAGTGCGCGAAGTGCTCCCGGGCTTTCCCCTGCGAAAAGTCCCTCGACATCCACACCAAAGATTGCGGCAGTCTCGATCTGAGCTGCGGCGGCAGCGAAAACTCCATGGACAAGTCGCGGTTCAACGAGAACGAGATCCGTCGCAGCGATTTCTTTTCGCGCTTAGACCTTCAAGATAACTCTTCGGAGAAAGCTTCTGCTTACGGCGATTCGCCCATCAAATTACAGCAGCGTCTGTTAGAAACCATGAAATCCATAGATAACAGCAAAGACCTCGCCGATATCCAATCCATCATCTCGTTGACGACGAACGGCAGTCTTCTGCAGCAGCTTCAAAATAAAACTGCAGAAATAGCACAGTTAAATGATAGCGACAGGACGGAGGAGGAGGAATCACAAGATGTCTTCGCCCAAGAGTTCAGAAGGATGAAGCTTCGCGGTGAGTTTCCGTGTCGCCTCTGCACAGCGGTATTTCCAAATTTGAGGGCTCTCAAGGGCCACAACCGCACGCATTTGAACAGCACGAACAACGGCACCTACAGATGCAACATGTGCCCGCATTCTTCGATTGATAAGGCCGCCTTAATCCGTCACATGCGCACCCATAACGGTGACCGTCCGTACGAGTGCGGCATCTGTAATTACGCCTTCACCACCAAAGCGAATTGTGAAAGGCACCTTAGGAATCGCCACGCGAAAAGCACCCGCGAAGAAATCAAAAAATCTATCATTTACCATCCCTCCGAAGACCCTACCAATGAGGATATCACTAAACAGATGGAAATGAAGAAGCTTAACAGCAGCACCAATTCTATCGATTCCATGGATTTGGCGCCAGAGAAGATGCGCAGCTCCACACCAAAAATTCCGGCCTTCCCAGATATCCAAAAACCGGATATCCTTCCAAGCAAAGTCATGCCGTTTCAAAGTATTAGCGAAATGATCCGACCGACAGAATCGATCTCGCCTCATCTCAATCCGCTAATGAATTTCACGCCGAAATTCACAAACACCTCGACTCCTCACAAAGTCAACCCGAAGATTCAGGTTAAAAATTTACAGACGCTCAAGGAAATACCCGAGTACGAGTATTCGGATGAagacgatgatgataatgatgagcCAATGGATTTAGTTTTGGACTTGAGCAAGAAGAAGGGCGACGAAAAGGAGTCGGCCGAAGATCTCACTAAAAAGAACGGAGAAGCTTTGAATGTGAGTGAAATCCTGACGCAGCAATTGCTGAAAAACACTCCGAAAATTGATCCTCATGCAGCGCTTTACGCCTCGCAAATATTTTACCGTAACAGCTTCCCGAATTGGCCTGCATTCCCAATTAATCCATTACTCTTTACTCAACCTCCATTAATGCAAGATTCTGAAATGAAAGAACGTCTTCAGAGATTGCAGTTGTGCGGTGGTAGTATGATTGGTAGCATGGATTTCGCCGAACGTCTTAAAAATCTCTATCAACCCAACCAATTCCCTGGTTTCAACATGAAACATTCCGAATCGAAATCAAAGAATCACGAGGATATTCAACCGCTCTCCTTGAACATCGAAAACAACTACAGCGATAACATGAAACTGAAAAGTCCTGTGGTGCAACCGAAACCGGAAATGCTGCAATCTCCCAACAGCGTTAAGATGGTCATCAAGAACGGAGTTTTGATgccgaaacaaaaacaaagacgTTACCGCACAGAAAGACCGTTCTCCTGCGAACACTGCTCGGCAAGGTTCACATTAAGATCGAATATGGAGAGGCATATCAAGCAGCAGCATCCTCAGTACTGGTCGCAACGCCAGAGGTCGTCGGTGGGAAATCCCGGCCGCAAACCGCAGCTGCTCCCGGCCACAATCAAGAACAGCTTGTGCGAGCTTAGCATTCCGAATTATGAAGTACCTAAGATGCAGGAATTCGAAGAAACCAAAGACACGAACACCATTTCCGATAAATTGAAGTACGCGATTTTGGCGCAGCATTTGCGTGCGGCTCAAGAAAACAAAGTAGAGAAGATtaaagaggaggaggaggaggaagattGCGCTTTAATCATTGATGAAAATGATGAATCGCCCAAAAACGAAGTTGAGAGTCCGGTGAATTtcagtaaaacaaaaattttggaGGAGAAATTGAAGGAGCTTAGAGAGAAGCAGCTGATGAACGAGAAGATGATTAAGAGCGAAGAAGCTCAAGATTTGGTGCCAGTTTCGAGGCTTTTGGATAATGCTTCACAGCAACCGTTCAAAGATTACTTTCGTCGCGATGGAGACGATAACGATGGAGAGTTGATTAGTGAGGAGGATGAAGAAGGATTGGTTGCTAGTGGAAGCACCAGCGAAGGAAATTCAGGCACCGACGAAAATAGATCGGAGGGTGAAAGCGCGTCGAATCAACCCATAAAGAAGAAGTCTGCATATTCTTTGGCGCCCAATCGAGTGAGCTGTCCTTATTGTAGTCGTAAATTTCCGTGGACTTCGTCGCTGCGCCGTCACATTTTGACACATACCGGTCAGAAGCCTTTCAAATGCAGCCACTGTCCTCTATTGTTTACCACCAAATCGAACTGCGATCGTCATCTGCTGAGGAAACATGGAAATTCTGCGACAACAATTTCCAATGAAAccattaataacaacaacttcATGATGAGGAACGTTCCCGAGAGACCGTTCAAATGCTCGAGTTGTCCGAGCAGTACGTTCTCCACGTACTCCAACCTGAAGAAGCACATGATCAGCAAGCACGGAGCTCAGGACGATCGTCAAGGTTACGAAGCCGGAAGTTCCGAAGATGAAAAGAATAATAGCGATCAGAAGAGCGATTGGGAGGCGCAGATCTCGCACGGAAAGCAACTTCCGTTGCCGTCGCACGACACGAATCAGGTCTCCAATTCGGATCTACCATTCAAGTGTCACCTGTGTGACAGTTCATTTGGTGAGAGGCAGGATTGCTTGGATCACATTCGCGATAAGCACGCATCTGAATACGATTTACTGATGTCGAAGAACGCTTTGGATGCGAATGCCTCGACGCCAGATGAGGGCGGCAACCATGAAGATGAGGAGAACGAGATTCGCGGAAAGTTTCCGGATTATTCAAATCGGAAGGTAATTTGTGCGTTCTGCATGCGTCGTTTCTGGTCCGCCGAGGATCTCAGGCGGCACATGAGGACGCACACAGGAGAGCGACCATTCAGTTGCGACATCTGCCGGAGGCGGTTCACCTTGAAGCACAGCATGCTGCGACATCGCAAGAAGCACAACGTTTCGTACGACAACGACGCCGCGCAGAGCGACGACGAAAGTGGCGCCATCATCGCCGTCTCTGCACCGGAGAATCGCATCGTCGACAACCAGAAGGACAACAAAAATCTGATCTCGAAATTCGAAAGAACCGACGAGTCCGATGGTAACGAGGGAAGCGATTTGATCAGCAATCTTCTCGGCATCCGAGACAGATCCATCATTGAAAAGGTGCTCACTGCATCCGCTGATGACGCCGCTAAACTGTTGGGCGTCGGAGAATAA
Protein Sequence: MESVKQMGCPLSSGHASPSSGTHLIGMLDFSDFEMQGVLCMPPRQFGCGSQEKIDETRMDEPLTKEINQSDSGIFSATSNTTCTEETSCRTHDNDSGDNRSDCSSPDKKYFCPICETMLTSQHEFTLHIRCHNNDTETQDPEKGYTCKICFKVLSSSSSLDRHVLVHSGERPFTCKYCGDTFTTNGNMHRHMRTHKTENYESDGSTDSNTSSGSKGIEFNNNKIDRYEGKRKLEDDSYKLPRKRPHLEDTFKCLVCDRDDFSTPKALEMHLEDNHPDYPAKCHQCNQIFKNHKILNFHRNTVHVDGENGKKSSVVGFKDLTFVDFSSEKFPHIARAECEKNLHKATPGLKFQCAKCSRAFPCEKSLDIHTKDCGSLDLSCGGSENSMDKSRFNENEIRRSDFFSRLDLQDNSSEKASAYGDSPIKLQQRLLETMKSIDNSKDLADIQSIISLTTNGSLLQQLQNKTAEIAQLNDSDRTEEEESQDVFAQEFRRMKLRGEFPCRLCTAVFPNLRALKGHNRTHLNSTNNGTYRCNMCPHSSIDKAALIRHMRTHNGDRPYECGICNYAFTTKANCERHLRNRHAKSTREEIKKSIIYHPSEDPTNEDITKQMEMKKLNSSTNSIDSMDLAPEKMRSSTPKIPAFPDIQKPDILPSKVMPFQSISEMIRPTESISPHLNPLMNFTPKFTNTSTPHKVNPKIQVKNLQTLKEIPEYEYSDEDDDDNDEPMDLVLDLSKKKGDEKESAEDLTKKNGEALNVSEILTQQLLKNTPKIDPHAALYASQIFYRNSFPNWPAFPINPLLFTQPPLMQDSEMKERLQRLQLCGGSMIGSMDFAERLKNLYQPNQFPGFNMKHSESKSKNHEDIQPLSLNIENNYSDNMKLKSPVVQPKPEMLQSPNSVKMVIKNGVLMPKQKQRRYRTERPFSCEHCSARFTLRSNMERHIKQQHPQYWSQRQRSSVGNPGRKPQLLPATIKNSLCELSIPNYEVPKMQEFEETKDTNTISDKLKYAILAQHLRAAQENKVEKIKEEEEEEDCALIIDENDESPKNEVESPVNFSKTKILEEKLKELREKQLMNEKMIKSEEAQDLVPVSRLLDNASQQPFKDYFRRDGDDNDGELISEEDEEGLVASGSTSEGNSGTDENRSEGESASNQPIKKKSAYSLAPNRVSCPYCSRKFPWTSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNSATTISNETINNNNFMMRNVPERPFKCSSCPSSTFSTYSNLKKHMISKHGAQDDRQGYEAGSSEDEKNNSDQKSDWEAQISHGKQLPLPSHDTNQVSNSDLPFKCHLCDSSFGERQDCLDHIRDKHASEYDLLMSKNALDANASTPDEGGNHEDEENEIRGKFPDYSNRKVICAFCMRRFWSAEDLRRHMRTHTGERPFSCDICRRRFTLKHSMLRHRKKHNVSYDNDAAQSDDESGAIIAVSAPENRIVDNQKDNKNLISKFERTDESDGNEGSDLISNLLGIRDRSIIEKVLTASADDAAKLLGVGE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01058636;
90% Identity: iTF_01058636;
80% Identity: -