Basic Information

Insect: Nicrophorus vespilloides
Gene Symbol: -
Assembly: GCA_001412225.1
Location: NW:720-3478[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.25 17 5.5 0.6 3 23 167 188 165 188 0.93

2 10 0.00048 0.032 14.1 0.6 1 23 197 219 197 219 0.97

3 10 3.7 2.5e+02 1.8 1.2 1 19 225 243 225 247 0.72

4 10 1.7e-06 0.00011 21.8 0.6 1 23 253 275 253 275 0.98

5 10 8.5e-07 5.8e-05 22.7 0.4 1 23 284 306 284 306 0.99

6 10 7.7e-08 5.3e-06 26.0 0.5 1 23 312 334 312 334 0.98

7 10 1.7e-05 0.0012 18.6 1.4 1 23 340 362 340 362 0.95

8 10 2.1e-05 0.0014 18.4 3.3 1 23 368 390 368 390 0.98

9 10 7.5e-06 0.00051 19.7 2.6 1 23 396 418 396 418 0.98

10 10 8.9e-05 0.0061 16.4 5.8 1 23 424 447 424 447 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.25	17	5.5	0.6	3	23	167	188	165	188	0.93
2	10	0.00048	0.032	14.1	0.6	1	23	197	219	197	219	0.97
3	10	3.7	2.5e+02	1.8	1.2	1	19	225	243	225	247	0.72
4	10	1.7e-06	0.00011	21.8	0.6	1	23	253	275	253	275	0.98
5	10	8.5e-07	5.8e-05	22.7	0.4	1	23	284	306	284	306	0.99
6	10	7.7e-08	5.3e-06	26.0	0.5	1	23	312	334	312	334	0.98
7	10	1.7e-05	0.0012	18.6	1.4	1	23	340	362	340	362	0.95
8	10	2.1e-05	0.0014	18.4	3.3	1	23	368	390	368	390	0.98
9	10	7.5e-06	0.00051	19.7	2.6	1	23	396	418	396	418	0.98
10	10	8.9e-05	0.0061	16.4	5.8	1	23	424	447	424	447	0.98

Sequence Information

Coding Sequence: ATGGAGTGCTTGAGGTGTAGATTGTGTGCTTTAGAGGCACCCAGTTTGATACACATTGAAGAGGATTTTGGAAATCAAGTTTTAACCTTATTTCATGTACAAATTGGGGGCCCCAATGATAGACTTTCATGTTACGTTTGCAACACTTGCATGAACACAGTTAATGCCACTTggatattttttgaaaaagtacAGAGGGCTCAGCGGGAGTTGATAGAAACTTTAACAATTGTTCAAAGTTCAACCAAGGTAATTGAAGATTGTGttataaataacacaaaattgAATGCAACAGAAACTCTTCTGGATGTTGTTATtgataacaaaaatgaaactgaAGACAAATTATTTACTGGTAAAGGAAGAACAAAAAAGACAAAATGTCGAAAGTCAGAAGAAACTGATGCACTGTCTGGGGCAAGTGATTGTGAACAAAATGAAGATGGAAGTCTTATAATGCAAAGGAATCTGGCTGGATGGGAGAGTTATCCTTGGGCATGCTGTGATTGTGGTCAAAGTGTACTTAGCTGTGAGGAATTGAGGGATCattatattgtaatacatGGCCAAAATAACAGTGGTTCAAGATTTGCTTGTGCAGATTGTCCAAAAATCTACACAAAATTCACCATGTTTTTAACACATGTTAGAACTCACAGACCCTACTTGAAATTCTGCTGCGATGTATGTAACAAATGGTTCCCAAGTGCCAAAATTCAGGAGAAACATAGAGCTGAGCATATGGATGAAAGACCATACCCTTGCACCACATGTGGTAAACGATTTCGAATGCAGTCAGCATTGTTGGTCCATTCCAGGTCCCATTTACCTTTAGAATTGAAAAATCGCTATCAATGCGACCAGTGTCCAAAGCGATTTGGCACTCGACCTAATTTGATGGCACATAAGAGAATCCATGCAGGCGTCAGAGATTTTACGTGTGACCAATGTGGAAAAAGTTTCGTACAAAAGGGTAATCTTGATAATCATTTACTAACTCACACAGCGGTTCGTCCATTCTCTTGCTCGACCTGTGGAAAGTCATTCAAAACTTTGGTGAGATTGAGGAAACATGGTACAGTACACTCCGGTTTGAAACCCCATCAATGTGATGTTTGTGGACGACAATTCAGAGAAAGAGGCACTCTGAAAGAACATCATCGCATCCATACTGGAGCTTTGCCATTTACATGCGAATTTTGCGGCAAAAGTTTCAGatttaaaGGAGTTTTAACAACGCATCGTAGACAGCACACTGGCGAGCGCCCCTACTCTTGTCTGGAGTGTCAGCACCACTTCACAAATTGGCCTAATTATAATAAGCATATGAAGAGAAGACATGGCATCAATACAAGCGTAACAGTTCGCAAACCACAAACAATTCCACCGACTGGTATGCCGCAGAGGAATCCTCCAGGTTCGGTATTGGCTCCACCACAGCTGCCGGAAACCCACTACGGCCATCACGAAACCCATTCTTTTTATCCTGTACTAAACTTGTACAATATTACAGATGATTTAATGCAGCAGAGAACGGTGCAGTAA
Protein Sequence: MECLRCRLCALEAPSLIHIEEDFGNQVLTLFHVQIGGPNDRLSCYVCNTCMNTVNATWIFFEKVQRAQRELIETLTIVQSSTKVIEDCVINNTKLNATETLLDVVIDNKNETEDKLFTGKGRTKKTKCRKSEETDALSGASDCEQNEDGSLIMQRNLAGWESYPWACCDCGQSVLSCEELRDHYIVIHGQNNSGSRFACADCPKIYTKFTMFLTHVRTHRPYLKFCCDVCNKWFPSAKIQEKHRAEHMDERPYPCTTCGKRFRMQSALLVHSRSHLPLELKNRYQCDQCPKRFGTRPNLMAHKRIHAGVRDFTCDQCGKSFVQKGNLDNHLLTHTAVRPFSCSTCGKSFKTLVRLRKHGTVHSGLKPHQCDVCGRQFRERGTLKEHHRIHTGALPFTCEFCGKSFRFKGVLTTHRRQHTGERPYSCLECQHHFTNWPNYNKHMKRRHGINTSVTVRKPQTIPPTGMPQRNPPGSVLAPPQLPETHYGHHETHSFYPVLNLYNITDDLMQQRTVQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01058617;
90% Identity: iTF_01058617;
80% Identity: -