Nves003376.1
Basic Information
- Insect
- Nicrophorus vespilloides
- Gene Symbol
- -
- Assembly
- GCA_001412225.1
- Location
- NW:111480-114824[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.4e-05 0.00096 18.9 0.0 2 23 5 27 4 27 0.94 2 12 0.00032 0.022 14.6 1.2 1 23 27 49 27 49 0.96 3 12 7.6e-05 0.0051 16.6 0.1 2 23 69 90 69 90 0.97 4 12 0.02 1.4 9.0 0.1 2 23 175 196 174 196 0.96 5 12 5.1e-05 0.0035 17.1 6.0 1 21 220 240 220 242 0.95 6 12 0.05 3.4 7.7 0.2 3 23 256 276 254 276 0.96 7 12 1.2e-05 0.0008 19.1 0.1 1 23 325 347 325 347 0.97 8 12 6.4 4.3e+02 1.1 0.9 1 23 368 391 368 391 0.86 9 12 0.00067 0.046 13.6 0.1 1 23 403 425 403 425 0.97 10 12 4.9e-06 0.00034 20.3 3.0 2 23 436 458 435 458 0.96 11 12 7.2e-06 0.00049 19.8 0.3 1 23 467 489 467 489 0.99 12 12 0.0086 0.59 10.1 0.0 1 23 506 529 506 529 0.92
Sequence Information
- Coding Sequence
- ATGGGTAAAAGCAAATGCGAGATTTGCGGCGAAGTGTTCAAAACAGCCCGATGGTTAGAAATTCATCTTGCCAATGAACACGCATGTAAAGAGTGTGGAAAGATCCTGAAGACTGTCTCGGATTACGACCAGCATCGAAAAACCCATCTAAACATCACTTTAAGCAGAGATCCGAATACGCACAGTTATCAGCGTTTAAATAGAACATGTAAAATATGCGAGAAAGGTTTTGCAACTGACGAAGAGCTCGAGGAGCACATGCTGCTGCACGATAGGATGCCCGTGCTCGAGGCCGAAGAAGATGATGTTGAGGatgtggaggaggaggatgacgATGATGAAGTTGTGGTACAGGAAAGGGATGTTGAAGAGTTGATGGTTGAGGAAAGGGAGTTGGAGGAGGTTGTCATCGAGGAGGAAGATGTCGAGGTGGAATTGCAGGAGGTGCATGTGACCAAGAAGCAGTCCGGACGCAACGATAAATTTCATCCGGAGAAGAAGAGTAAGGTGGACTTTCCGAAGCCGTGCGATGAATGCGATCGTGTGCTTTACTCGCTCTCCGGTTGGGTGATGCACAAGAAGATGCACGATCGTAACAATAAGTTGCACAAAACGGCCAAGGCTCCGGCTGTCAGCGAAAATGACGATTCGGATTATTTCACTTGCAAGAAGTGCTTCAAGGTGTTCGCCAATCGCTCCACCTTGAAGACGCACATGAAATGTCACGGGGCAAGTCCCGCGAAATCACCGAAGAAGACCTATTGGTGTGATATCTGTCATCAGGGGTGTCCGGGCGCTGAAGAGCTGGAAGCGCATAAGCTCGAACACGAGAACAACAGCGTCGATTTGACAGAATCGGAAGACGGCGATTTGGATACCAGCCTGCTTATACCGATGGAACAGGTGAGCACGATGGATCAATGGAGCGATCACCCGGATGCTGACCACAACGATGCAACAACCACTCCGAACTACGAATGCGAAGTCTGCGGTAAATCCTTCAGCGCTCCTCTATCCCTCAAAGTCCATAGGTCTTGGCACAAGAGGATCCAGAGGAAGGTACCGGATGCGATAGTTGTTGAGCCTTCCCCATCTCAATCGTTCAAATGCATTTCGTGCGCGATGCGTTTCGATGATGACACCGCTCTACAGTTGCACATCTTCGAATGCCACAGGAAGACATCGATGACGATCGAGAGGCGGATATTCAGATGCGAGATATGCGACATCGGTTTCGCGCTCAAGAGCGAGTACGAGTTGCACGAGATGCAGCACGAGAGGCCCATCGAGAAGAGACCCAGAGTGACGTGCAAGTATTGCAAGAAGAATTTCAGCCGCACCAGCTACCTGAACATGCACATGAACTACAAGCATCCGCAGCACGCAATTGCAGGACAATACAAATGCACGCTGTGCGAGAACGTCTTCGACAAGCAGTCTGCCCTCAACATCCATCTGAGGGTGCACGAGAAAATGAACGGAAGTTCGAACAATCCCAACATCGTCACACACAAGTACACCTGCTCGATTTGCCAAGTCGGCTTCGACATTCCCAAGGAATTGAAATTGCACGTGATCGACATGCATCCGTTCTAA
- Protein Sequence
- MGKSKCEICGEVFKTARWLEIHLANEHACKECGKILKTVSDYDQHRKTHLNITLSRDPNTHSYQRLNRTCKICEKGFATDEELEEHMLLHDRMPVLEAEEDDVEDVEEEDDDDEVVVQERDVEELMVEERELEEVVIEEEDVEVELQEVHVTKKQSGRNDKFHPEKKSKVDFPKPCDECDRVLYSLSGWVMHKKMHDRNNKLHKTAKAPAVSENDDSDYFTCKKCFKVFANRSTLKTHMKCHGASPAKSPKKTYWCDICHQGCPGAEELEAHKLEHENNSVDLTESEDGDLDTSLLIPMEQVSTMDQWSDHPDADHNDATTTPNYECEVCGKSFSAPLSLKVHRSWHKRIQRKVPDAIVVEPSPSQSFKCISCAMRFDDDTALQLHIFECHRKTSMTIERRIFRCEICDIGFALKSEYELHEMQHERPIEKRPRVTCKYCKKNFSRTSYLNMHMNYKHPQHAIAGQYKCTLCENVFDKQSALNIHLRVHEKMNGSSNNPNIVTHKYTCSICQVGFDIPKELKLHVIDMHPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01058599;
- 90% Identity
- -
- 80% Identity
- -