Nves005242.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nicrophorus vespilloides
Gene Symbol
-
Assembly
GCA_001412225.1
Location
NW:301335-308545[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 26 3.5e-06 0.00024 20.8 0.6 1 23 185 207 185 207 0.99
2 26 0.0011 0.072 13.0 0.1 1 23 213 235 213 235 0.97
3 26 3e-05 0.002 17.9 3.1 1 23 241 263 241 263 0.98
4 26 0.00024 0.017 15.0 1.4 3 23 277 297 275 297 0.95
5 26 8e-05 0.0054 16.5 0.4 2 23 304 325 303 325 0.97
6 26 3.3e-06 0.00022 20.9 4.1 1 23 331 353 331 353 0.98
7 26 1.3e-05 0.00091 19.0 0.1 1 23 359 381 359 381 0.96
8 26 3.6e-06 0.00025 20.7 0.1 1 23 387 409 387 409 0.99
9 26 2.7e-07 1.9e-05 24.3 2.1 1 23 415 437 415 437 0.99
10 26 2.1e-06 0.00014 21.5 2.6 1 23 443 465 443 465 0.98
11 26 9.6e-06 0.00065 19.4 1.2 1 23 471 493 471 493 0.98
12 26 2e-05 0.0014 18.4 1.5 1 23 497 519 497 519 0.97
13 26 0.0012 0.079 12.9 2.3 1 23 557 579 557 579 0.98
14 26 0.041 2.8 8.0 0.5 1 23 583 604 583 604 0.97
15 26 1.4e-05 0.00098 18.9 0.2 1 23 612 634 612 634 0.98
16 26 8.3e-05 0.0056 16.5 3.4 2 23 864 885 863 885 0.98
17 26 2.4e-06 0.00016 21.3 1.2 1 23 891 913 891 913 0.99
18 26 7.7e-05 0.0052 16.6 5.0 1 23 921 943 921 943 0.97
19 26 0.00059 0.04 13.8 1.5 1 23 949 971 949 971 0.98
20 26 0.0049 0.33 10.9 0.2 1 23 983 1005 983 1005 0.96
21 26 1.2e-06 8.5e-05 22.2 2.8 1 23 1011 1033 1011 1033 0.96
22 26 2e-05 0.0013 18.4 0.5 1 23 1039 1061 1039 1061 0.99
23 26 1.5e-06 0.0001 22.0 0.9 1 23 1067 1089 1067 1089 0.97
24 26 6.9e-05 0.0047 16.7 1.5 2 23 1096 1117 1095 1117 0.97
25 26 3.9e-05 0.0027 17.5 0.1 1 23 1123 1145 1123 1145 0.99
26 26 7.3e-08 4.9e-06 26.1 0.5 1 23 1151 1173 1151 1173 0.98

Sequence Information

Coding Sequence
ATGGATTTGAGTGTTTACCTTTCGGCCCCATTGCAAATAGACAAGATATGTCGGGCTTGTTTAACAGAAAAAGACAAAATGACACCCCTTTTCGGGGCCTGCTTAGACGATATGCTATTGTCTTTCGCTGCCATTCAGgTGCATGAAGGAGATGGACTACCAAATCAGCTATGCATTCAATGTGTTCAAGTATGTAGCAGAGCTTATGCTTTCAAACAGCAATGTGAAAAGTCTGAAGCTATTTTAAGGAGCTATAATAGCCCAGAATTTcaggaGCAACTTGCGCAATCTCTTGCATTACAAGACAAGGATGAGCTTGAGCATCAGCTTGAATATTCTGAAGAGATTGATCATGTTGTTATTAAAGAGGAATTACCAAGtgaatttgttaatgttaattatgtgGAGGAAGTATGTTTAGAGGACAAAACGGAATATTATAGTATAGATAATATTGTGGAGTCAATAGGAGAAGAATTAATTGTCAAACATACAGAGACTTCAGAGTTGGATGATAAAGagattaaattagattttgttgGTAAACAAAAGTATCAATGTTCTAAATGCGATGAATCGTTCAATTTGAAAGTAGATTTAAAAGTACACATGCTTAGTCATCCCAAGGAATTGAACTATGTATGTCCGGTGTGCAATAAAGCGTTTCCAGAAGCTCGGATACTTAAAAGGCATTCGAAAATCCACTTGGAGAAGAAGCCGCATCAATGCGATCAATGTGACATGTCCTTTGCGGAGAGTTCTAATTTGAGTAAGCACAAGAAGAAGCATACTGGCGAGTTGAGAAACATTAAGGGTAAACCTCATCTTTGTTCGGTTTGTGGTCGAGCATTCAAGTGGGCGTCGAGTTTGTCCAAACACATGAAATACCACACAggacataaattattatcctGCGAATACTGTAATAAGCAATACGttgaagcTAGAAGTTTAAAGATACACATTAGATCACACACGGGAGAAAGACCTCACGTGTGCAAGATATGTCAAAAGAGCTTTACGCAAATCTGTAACTTGGAGAAACACATTAGAGTGCATACAGGTGAAAAGCCGTACTTGTGTCCCGTTTGTGGAAAAGGCTTTACGCAATCCGGTTATGTCGGCATCCATATGAGACGGCATACAGGCGAGAGGCCGTACCAATGTTCGACTTGCGGAAAAGCATTTGCTGGTTCAAATACTTTGGCAATTCATCAAAGAATACACACCGGTGAAAAACCTTATACTTGCAATATTTGCGGGAAGAGCTTCAGCAGACACGAAACGTTGGTCATCCATACGCGGTCTCATACAGGGGATAAACCGCACGTTTGCAGTATTTGCAGCAAAGCCTTCACTTCGTCCGGTCATCTCTCCGGCCACATGAGGACTCATACCGGTGAAAAGCCGCACGAGTGCATGAAATGCGGAAAACGATTCGCAGGTTCGGGTAGTTTGAAAGTCCATCTGAAAACCCATTCGGAAACGCATGAATGCTTAACCTGCGGTAAACGGTTCAATGGATCCAACGCTCTGAAAGTGCACATGAAATCACATTGCGAAGAATACGAAATTACCACGGAATTGAAATCGCATTCGCAGGAAATCGATAAGACGCAAACCGAAGAATACGAATTGAAAGATCACGACCAACAGCACATTGAAGAATACGAGTGTTACAAATGTCTGAAAAGATTTACAGACGAAAATTTCCTCAACATGCATCTGAAATCCCACAATGATAAATATGACTGTTTCACCTGTGATCAAagCTTCGATGGcgacaatataaaaattcaccTGAAATCGCACGAAGGACATTACGAAGAAAGGTTCGAATGTAGAATATGCGGAAAGGCGTACGACAAAGCTTTCAGTTTAGAGATCCATATGAATTCACATTCGCTCCTAGAAAAAGAAACGCTGAGCAAAGTAGAGACAGTTCAAATTGCAGAATTGCTGACTGGAGAGACTATACACACGGTGCAGTATTCTGCAGTAATGGAAGTGAAAAGTGACCAAAATCAGGTGGACGTCAGTAAACTATGCAGAGCATGTTTGACTGAAAAGGAGGACATGCGATCGGTCTTCATCGTCGATGAAAGCCTCGGACAAACAATGAGATTCGCCGAAATTATAATGAGTTTTACTAATTTACagATCGATAATAGCGATGGGCTTCCaacattattatgtatacaatGCGTACATCAAGCGAATCAATGCTTCCAATTCAAACAGCTCTGCGAACAGTCAGACGCCAATCTGCGACAATATTTGGGCAAACCCCTGAACCCGAAACCTTGCAAACAAGAGGAAGAAACCTCGCGGAGCTATGACAGTAGTGTATACTTAGATAACTTCGGATTGGATTATTCATCGAATGATAGTGATGACGACGATGATATTAAATCGGAGTTCGAATCTATACTAGAATCTAAGACTTTGGATCCGAATGACGAGAAGGCGATTGCTCAAAGGCAACTTCTGAAATCCGCAAAGTCGCACAAAAGTAAATCGAACAAGAAGAAATTACTCGCCAAGGCTGGCTCGAAAGTGAGTCccaaaaaattgaaacgtaATACGAATCAGTGTAACGTATGTAAAAAGCAATTCATCAATATGAAGTCGTTTAGGAAGCATTTGCGCACACACATAGAAGATAGACCGTATAAATGTAAGCTGTGTCCGCGGGGATTCACCGAAGAGAACTACTTAAATAATCATATGAGAACGCATATACCGGAGGAGCAAAAGCCTCATGTGTGCAAAATATGCGAGAAGAGATTCATACACACGACATTACTAACTAAACACATGCTCAAGCATACTGGAGAGAAACCGTTCGTTTGTAAGATTTGCAATAAGGGATGCTACGCCGAGAACAGTCTACTCAAACATATGAAGATTCATGAGAAGAAAGAAGGCGATCCGGCCTTGTTGAAGCACATCTGTGATTACTGCAAGAGCGAATTCCCAGATGCACCGACCCTAGCTGTCCATATAAAACAGCATACAGGAGACCGTCCATTCCTATGCAATATGTGTGGTAAATGTTTCCCGCAAAGATTTAATTTGGAACTTCATCTTAGAACTCACACAGGCGAACGACCATTCACTTGCGAAGTTTGTAAGAACGGTTACGTTTCCAAAGCCAGTTTGAAGATTCACATGCGAACGCACACTAATGAGAGaccttttatttgtaatttctgcGGAAAAGCGTTTAGACAATCCGGTGATCTTACGAGTCACAAACGACTTCATGGTACAGAAAAACCAATCGAATGCAGCGTCTGCCAGAAAAGGTTTACAACTGTTATGAAGCTCAAGTATCATATGAGAAACCACACCGGAGAACGACCTTACGTTTGTACAGTATGCGGAAGAGGTTTTACTGTCAATACCATTTTACTAAGACATATGCGCGTTCACTCCGGTGAAAGACCTTATGTCTGTGTAACATGCGGAAAGGCATTTTCACAATCAAGTACTTTAAACACGCATATGAaggtACACGCTCCTAATAGTGGATACCGAATCGTTGAACCTccacaacagcagcagcagcaacaacaacagcagcagcagcaacaacaacagcaacagcagcaaccaCAAGGATTACCCAAATTCCATCAACCCCAAGATGCCAATAAATATCATACACAGACTGATCAGAATAATAGACTGTTGCAAACTGATAATAGGATGCAAATGCAGGCGGAGCCACCAAGGATGATGCAGCAGGACACAACTAGAATGATATCAACTGATGGTTCTAGAATATTGAATGACGGCACAAGATTGCTCAATGATAATTCACATTTACTTGCGGTTACGGATAACCGTTTAAATGAGTACAAGATAAATGATAATACtaagtttataaatgataatagaaatatgttGATGAACGACAGCACGAGATTATTGGTGAACGTCACAGAACCCCAGAGACTTTTAGTAAACGATTCCAGATTAATTACTAACGACAATAGATTATTAACGAACGATAACACTCgattaataacaaatgtaaatgatAATACCAGGTTGATGGTCAATACTAATGACTCCAGACATTTGGCTGTGACTGTTGAAAATTCCAGGATTTTAACTGACAAATACTTAACCAACTATGATCCTTATCACAGAGGACAATTATAA
Protein Sequence
MDLSVYLSAPLQIDKICRACLTEKDKMTPLFGACLDDMLLSFAAIQVHEGDGLPNQLCIQCVQVCSRAYAFKQQCEKSEAILRSYNSPEFQEQLAQSLALQDKDELEHQLEYSEEIDHVVIKEELPSEFVNVNYVEEVCLEDKTEYYSIDNIVESIGEELIVKHTETSELDDKEIKLDFVGKQKYQCSKCDESFNLKVDLKVHMLSHPKELNYVCPVCNKAFPEARILKRHSKIHLEKKPHQCDQCDMSFAESSNLSKHKKKHTGELRNIKGKPHLCSVCGRAFKWASSLSKHMKYHTGHKLLSCEYCNKQYVEARSLKIHIRSHTGERPHVCKICQKSFTQICNLEKHIRVHTGEKPYLCPVCGKGFTQSGYVGIHMRRHTGERPYQCSTCGKAFAGSNTLAIHQRIHTGEKPYTCNICGKSFSRHETLVIHTRSHTGDKPHVCSICSKAFTSSGHLSGHMRTHTGEKPHECMKCGKRFAGSGSLKVHLKTHSETHECLTCGKRFNGSNALKVHMKSHCEEYEITTELKSHSQEIDKTQTEEYELKDHDQQHIEEYECYKCLKRFTDENFLNMHLKSHNDKYDCFTCDQSFDGDNIKIHLKSHEGHYEERFECRICGKAYDKAFSLEIHMNSHSLLEKETLSKVETVQIAELLTGETIHTVQYSAVMEVKSDQNQVDVSKLCRACLTEKEDMRSVFIVDESLGQTMRFAEIIMSFTNLQIDNSDGLPTLLCIQCVHQANQCFQFKQLCEQSDANLRQYLGKPLNPKPCKQEEETSRSYDSSVYLDNFGLDYSSNDSDDDDDIKSEFESILESKTLDPNDEKAIAQRQLLKSAKSHKSKSNKKKLLAKAGSKVSPKKLKRNTNQCNVCKKQFINMKSFRKHLRTHIEDRPYKCKLCPRGFTEENYLNNHMRTHIPEEQKPHVCKICEKRFIHTTLLTKHMLKHTGEKPFVCKICNKGCYAENSLLKHMKIHEKKEGDPALLKHICDYCKSEFPDAPTLAVHIKQHTGDRPFLCNMCGKCFPQRFNLELHLRTHTGERPFTCEVCKNGYVSKASLKIHMRTHTNERPFICNFCGKAFRQSGDLTSHKRLHGTEKPIECSVCQKRFTTVMKLKYHMRNHTGERPYVCTVCGRGFTVNTILLRHMRVHSGERPYVCVTCGKAFSQSSTLNTHMKVHAPNSGYRIVEPPQQQQQQQQQQQQQQQQQQQQPQGLPKFHQPQDANKYHTQTDQNNRLLQTDNRMQMQAEPPRMMQQDTTRMISTDGSRILNDGTRLLNDNSHLLAVTDNRLNEYKINDNTKFINDNRNMLMNDSTRLLVNVTEPQRLLVNDSRLITNDNRLLTNDNTRLITNVNDNTRLMVNTNDSRHLAVTVENSRILTDKYLTNYDPYHRGQL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-