Nves008544.1
Basic Information
- Insect
- Nicrophorus vespilloides
- Gene Symbol
- lolal
- Assembly
- GCA_001412225.1
- Location
- NW:336158-355430[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.3e-12 1e-08 34.2 0.0 1 39 396 435 396 439 0.90 2 4 1.8e-13 4.2e-10 38.6 0.2 1 39 450 488 450 491 0.95 3 4 9.9e-20 2.3e-16 58.6 0.0 1 45 505 550 505 550 0.98 4 4 4.1e-17 9.5e-14 50.2 0.0 1 39 557 596 557 599 0.94
Sequence Information
- Coding Sequence
- ATGAATTTGATCCACAACAAAATAGTGAGCGTTTCTCGTCTAATCGTACGTACGTACGGCGCGGTGGGTCCGTTTTTCCACATCGGCCTTTCTGCCATTCCATGTCACACCGCGCTCTTCCAAAAAATCATATTACGTTTCGTGCACACACCGAAGGTCCTCTCGCAGGTCGTATTATCCGCCTGTTCCTCTTACTTTCAAAAACTCCTTCTAGAGAATCCGTGCAAGCATCCCACGATCATAATGCCACAAGACGTGTGCTATGCCGATCTGAAATTCATCATTGAATTCGTATACAAAGGAGAAATCGACGTTTCACAAGCAGAATTGCAGtCGATATTAAAGACGGCGGATCAGCTTAAGATAAAGGGTTTGTGCGAGTCGCCCGAGGAGAGGCTGGAAGGAGATCCGGAAGCAGACCTGAGTAATTCCGGGTTTCCGTTCGCGGCTCGCGAGTACCCGAAGATCCGACGTCGCGACGGGGAGTCTCCGTCGCACGGCGGTGCTGACAATAACAACCGGAAACAGCGGCACCGGAAGTCGACGGCCGAGTCATCGGAGGCGGGGACGGCGGCAGCGGTCGCGGAGGTGGTGGTCGAGGGAGGGCGAGAGGAGCCCGACGAGGCGGAGACGCCGCCGGAAAACTCGAACGGACACGTTTCCGGTCCAGACGGGGCCGAAGAGAAGGAGGCTGTAGATGAGGACAAGAACAATAAGCCGCTTAATATGAGCAGTAATGCCCTGCTGACTGGCCAAATGCTATTTTCACAGTTCGGAGTTGATAATGAGGACTTTCCTCCGGAACCTCCGGCACCAACTGCGACTCCAGTAAGACACGTGGACATGCAAGAACACTCGCCCGCCCGTACTCTTCTCACGAACTCTTCCCTGCACAGGACAGACCTATCAGACCCGCCAAACACTAAGTTCAGAGACGTCAAGAAGGAGATCAAATTCGAGACGTTGAGATCGTTCGAACAGGAATCTCTATTAGATATCGACAGCTCGCACCATTCGATGGACAGCCACGACGGCGACCATTCGATGCACCACACCACCATGATGATAACGCCGGAACTGATGGGTCTGATGCCGCCCGAGACCCATCGACTGGGTACGTATCACGGCCTCAAAGCTAACGGCGATCTGCACGGATCGAGGCACGGTGGTGGACCCAAAACATGGACGCAAGACGACATGGAGATGGCTCTGGACGCATTGAGGAATCACAACATGAGTTTAACTAAGGCATCTGCTACTTACGGAATCCCATCGACGACTTTGTGGCAGAGGGCGCACAGGTTGGGAATCGATACGCCGAAGAAGGAAGGTCCGACGAAATCGTGGACGGAGGAGAGCCTGAACTCGGCTCTGGAAGCCCTGAGAACGGGCACGATTTCTGCGAATAAAGCGAGCAAAGCGTACGGCATCCCGAGCAGCACGCTGTACAAGATCGCGAGGAGGGAAGGCATCAGATTGGCGGCGCCCTTCAACGCCGCACCGACGACGTGGACGCCCGAGGATCTGGAGAAAGCGCTGGAATCGATAAGATCCGGGCAGACATCTGTGCAGAGGGCCTCCACGGAGTACGGCATTCCCACGGGGACGCTGTACGGTCGATGCAAACGCGAGGGCATCGAATTGTCGAGATCGAATCCCACGCCCTGGTCCGAGGATGCAATGGGCGAAGCACTGGAAGCTGTTCGaTTAGGACACATGTCCATCAACCAGGCCGCAATCCACTACAACCTGCCCTACTCATCCCTGTACGGAAGGTTCAAGCGCGGGATTAAATACGATTCGGATTCGATCGAGGCCAGCACGGACAGCCAATCGCAGCTCGAGAGCCCTTCCATGATGATGGACTACTCGAACCAACACCCAGTACAATACCAAAACCAATCGAACAGCTGA
- Protein Sequence
- MNLIHNKIVSVSRLIVRTYGAVGPFFHIGLSAIPCHTALFQKIILRFVHTPKVLSQVVLSACSSYFQKLLLENPCKHPTIIMPQDVCYADLKFIIEFVYKGEIDVSQAELQSILKTADQLKIKGLCESPEERLEGDPEADLSNSGFPFAAREYPKIRRRDGESPSHGGADNNNRKQRHRKSTAESSEAGTAAAVAEVVVEGGREEPDEAETPPENSNGHVSGPDGAEEKEAVDEDKNNKPLNMSSNALLTGQMLFSQFGVDNEDFPPEPPAPTATPVRHVDMQEHSPARTLLTNSSLHRTDLSDPPNTKFRDVKKEIKFETLRSFEQESLLDIDSSHHSMDSHDGDHSMHHTTMMITPELMGLMPPETHRLGTYHGLKANGDLHGSRHGGGPKTWTQDDMEMALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEESLNSALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLEKALESIRSGQTSVQRASTEYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGIKYDSDSIEASTDSQSQLESPSMMMDYSNQHPVQYQNQSNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01058526;
- 90% Identity
- iTF_01058526;
- 80% Identity
- iTF_01059230;