Ninv007347.1
Basic Information
- Insect
- Nicrophorus investigator
- Gene Symbol
- -
- Assembly
- GCA_963457615.1
- Location
- OY735141.1:28455664-28460150[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.47 42 5.1 0.0 3 23 263 284 261 284 0.89 2 15 7.7e-05 0.007 17.0 0.3 1 23 340 363 340 363 0.97 3 15 0.018 1.6 9.6 0.9 1 23 455 478 455 478 0.97 4 15 0.00045 0.041 14.6 4.6 1 23 481 504 481 504 0.96 5 15 0.024 2.2 9.2 2.6 2 23 511 533 510 533 0.95 6 15 0.002 0.19 12.5 4.4 1 21 651 671 651 672 0.95 7 15 0.0044 0.4 11.5 1.4 2 23 684 706 683 706 0.91 8 15 0.48 44 5.1 1.0 1 23 709 732 709 732 0.95 9 15 0.032 2.9 8.8 0.2 3 23 739 759 737 759 0.91 10 15 0.044 4 8.3 0.4 2 23 793 815 792 815 0.95 11 15 0.056 5.1 8.0 1.0 2 23 824 846 823 846 0.95 12 15 0.82 75 4.3 0.1 3 23 853 874 852 874 0.94 13 15 3.2 2.9e+02 2.5 4.9 3 23 999 1020 998 1020 0.95 14 15 1.9 1.7e+02 3.2 0.1 2 23 1027 1049 1026 1049 0.85 15 15 0.23 21 6.1 1.1 1 23 1062 1084 1062 1084 0.96
Sequence Information
- Coding Sequence
- ATGGAGAATAAACTATGCAGGACTTGCGGTAATTTCAACGGCGAATTCGTCGACATCTTCAAGACGGAGGGACTCGGCGAGAAAATCGAAACTTGTTTACCCATTATCgTATCACAGCATTGCCTACTGCCGGACACAGTGTGCATGGACTGTTATCGAAATGTATTGAATTACTACAACTTCACGAAGAAAtgcttacaaaatataattatactagaGGCCCAGTACAACATTCAGTTGTCATGTTTGAAGAGCAAAAGGAAACACGACAGATCGACCACCACATTGGGTGTGGGCCCGGGCACAGTCGCTCTCCCCCAGTGGTCGTTGTCCAAGAATGATGTCGATGGTGAGGATATTGGATATTACAAGGACAAGTTCAGAAAGTTCGACGTGAAGTTGGCAGGATTCGAGAAATCGCTCCAGGAACTGGATGATCTGAAACCGAAGATCGTCGATTACCCGTGCAGCAGCAGCGACGAGGACTCGacgaatattaataacaagagGTATTTTGATGACAAGGAGAATGATTTGATTCGCGAGATTGCGGAAAGAAAATCGCTGAAGAGGAAAAGCGAATCGGTGCTGTGCAACAGGCCGAAGATGTTCAAGATGGATACGAATCGCAGAAAGAAGAGGCCTCCAATGAAAGTAAAATGTAAGGAGATGTGTGATCTGCAAAAGATTTACGACGAAATCGAAGTACCAACGACGATGACCATCGatcagcagcaacagcagcataACGCATCGTCGATGGTGCAAAAGGCGTTGCCCCAGATCTGCCTGCTGTGCGACATGCAGTTCGATGGACCGTCTCTGTTGGCAGAACACGTGTACGAGACGCACGGCATAGACATGGCGCAAATCGTAAGCAACGAGCCGATccttgaaaaaaagaaaaagatgaTTCCGAATCTGGTGAAGATTGCCGACCTGAAAGCAAAAAGGGAATCCGAGGAATCGATGGAAGTGGCAGAGAACAGAGAAGAGCCGCCCACATTGGAGCCCAGTTACGTGTGTCCTCTTTGTCCGGCCACGTTGACCAACAGGTCCGATTTATTCCAACATCTTCGTCAGAAGCACGCCACCAAATCGCACATGATCTGCGGCCTATGCCTTTACATGGCCGATTCCTATCTCAATCTGACGGACCACATAGAGATCTGCCTGCTGAGCCACCCCATCAACAATCCATACATTTGCAAAGTTTGCAAGTACAACGACGACAACCACAAGGCCATAGAAAATCACGTGCTGGTTCACGACTTTTTGATAAGTTTCTGCAAGAAGGAGAATCGCATCTTCGACCCGGCCGACTACATCGAAACGAATCCAGATAGCGAAAACCACAAGGTGTATAATTGCACCGAGTGCGAACTGAATCTGTCCAGTTTCCGCGAATTTACTGCTCACCGTCGCTCCGAACATTCCATATTCCATTGCGATCTTTGCAACAAATTTTATGGCCGAAATTCGCACCTCTGGAAACACGTAAATCGTCTACACAAGGGCCATCCCTCCATCACTTGTCAGTTCTGCTACAAGACCAGCGCCTCCAAGTACCATCTGGCGCAGCACTTTAACAAGATCCATACGAGCAAAACGCCCAAGCTGAAGAACGGCGACATTGTGGAGGAAGAGGACTTTTTAAACAAGAAGTTTGAAGCGTTCGACTTTCAGAGCGTCAGACAGAGTTTCATGCGTCAGGAGCTGGAGAAGAACGAGCAGCAGCAGTCGGCTAAGGTGATGACCTCGACGGCTCAGCAACCTCTTCACCTTATGCAGCACCATCATccgcatcatcatcaacaccGCCACAATCAGCACGATTTGACATTAAGCATGATTGACGAGGGCGTCGAGGTGCCTAAAGAAATTGACACGAGCAGCAACCTATACACGAACATCATTACCAATTACACGCCGCCTCAGAATAACGGCGAGTTCAAGTGCCCCAAATGCTCGAAGGGCTTCCACAAGAAAACGCTGTTGAAGAAACACAAAAAGAACTGCAGGCCGCGTCTGCAAAAGGATCTGCTAACAAGATGCAAATCGTGCTCGCGGATATTCAAGGATCGCCAGAGCCTTGCCAAGCATCTGGTCAACTACCACAGCGAGTACGCTTGCGAAATATGCAAGGAAAAGGTACAGAGCAAGTGCGAGATCGTGAGCCACATTCGATTCAGCCATCCAGACTGCCACCTGTTCTGTCAGGACTGCGGCAATGTGTTGCGAAAGAGCGAAGATCTGAAGGCTCACAGCGAGGACCACCAGAACTCGTTTGTTTGCCAATTCTGTGCCGACTTACTGCCAAGCAAAATCAAGCTGAAGATGCATATACTCAGCCTGCACCGGAAGATACTCAGTCTCAGCTGCGGCATCTGCCTGAAGCTTTTCGAGACGCAGCACGTGCTCAGGGATCACGTGCGGCTCGTGCACAAAGATGTGTTGACGCCGTTGACATCGTGCACGGTGTGCGGAAAGAATTATGGCTCCAAGTGGAAGACTTTCGATCATCTAAATAAGTCTCACGGACGCATATTCAAGGCATGCAAGGCCTGCCTCGAAGTTTTCGACACTGACAGGGATCTGGAAGTGCACTACGAGTCTACACACGGCGCCTCCGGCAAAGATAAATCTACGGTTGCGTCGACCGCGGGAGCTGTTAAGAAGGATGCGATGACCGCAACGGCAACGATCAAGAAAGAGGCTGATGACAGCGGCGACGATAAGAGCAGCTATTCTGAGGAGAGTCCGTATGAACCCGAGGAGTCTGTTAAAATATCGCTGCTCGAAAAACGACTTACGGCAGTGCCTGAGAAGAATTCGcatcaacagcagcagcagcagcagaagaaaAAGGTATCGACTGCGGCGGCAGTATCTGCCGCAAAGAAAGTCAAAATAGAAACGGATTTCACTCCTGACCAAAACGGCGGTAACAGTTCTAAGAGGACGGTGTACGTGAACTCGAACGACCCCTCCTTTTGTGAAATCTGTCATAAGACTTGGCCGGCGAAGAAACACCTCTGGCAGCATTACATCCGATGCCACAAGTTGGTTGCGGCAACCGTGTGCGGAATCTGCCTAAAGACGAATGATAATTACGAAATGCTGCAGGCACATCTGCAGGACACGCATCCGACGTTGCTACACGGTCAAGGCTTTGGATCGAACTTCATCTGCAGGATATGCGGTAGATATCACAATGCCCGTTCAAAGCTAAAGCTGCACATGGCCATCCACGAGAACTTTGACTGGTCGTTACTGGAAAACTCTTACCTAAAGACGACCGACGCCCAAGAGGAGGATATCGAGGAGGAAGACGACGACATCAATTATGAGAGTCTGATCGAGCAGGTTGAGTGCAGCTCGGAGAATGATAATGAAGAAGAGAACGAGGAGACTAGTAGCAGCTCGGAGAGCGACGAAAGCGAAACTGAAGGTCTCAAGATGGAAAATGAATCCGAAGAGGAAGAGGAAGAAGATGGTGAGGAGGACGGAGAGGAGGATTCAAGCAGTCGCAGTGGAGATGTTATCAAGAGCGAGGATAACTCCGATTCCGAGGAGGAAGAGGACGAGGATGAGGACTTCGACTACTCGAACGACGGTAAGAACATGAAGTATGCCAGGCACCAGGACGTCGTCGACTCTGCGGTGAAGAGCATCTCGTACGACGATTACGACTACGAGGATCAAGATGATCAGGACCCGGAGTACTCGGACTCTGCCCAGGAGAACCTGAATTCGCATGAAATCCAGAGTGCCGTCGACAGCATCTTGTGA
- Protein Sequence
- MENKLCRTCGNFNGEFVDIFKTEGLGEKIETCLPIIVSQHCLLPDTVCMDCYRNVLNYYNFTKKCLQNIIILEAQYNIQLSCLKSKRKHDRSTTTLGVGPGTVALPQWSLSKNDVDGEDIGYYKDKFRKFDVKLAGFEKSLQELDDLKPKIVDYPCSSSDEDSTNINNKRYFDDKENDLIREIAERKSLKRKSESVLCNRPKMFKMDTNRRKKRPPMKVKCKEMCDLQKIYDEIEVPTTMTIDQQQQQHNASSMVQKALPQICLLCDMQFDGPSLLAEHVYETHGIDMAQIVSNEPILEKKKKMIPNLVKIADLKAKRESEESMEVAENREEPPTLEPSYVCPLCPATLTNRSDLFQHLRQKHATKSHMICGLCLYMADSYLNLTDHIEICLLSHPINNPYICKVCKYNDDNHKAIENHVLVHDFLISFCKKENRIFDPADYIETNPDSENHKVYNCTECELNLSSFREFTAHRRSEHSIFHCDLCNKFYGRNSHLWKHVNRLHKGHPSITCQFCYKTSASKYHLAQHFNKIHTSKTPKLKNGDIVEEEDFLNKKFEAFDFQSVRQSFMRQELEKNEQQQSAKVMTSTAQQPLHLMQHHHPHHHQHRHNQHDLTLSMIDEGVEVPKEIDTSSNLYTNIITNYTPPQNNGEFKCPKCSKGFHKKTLLKKHKKNCRPRLQKDLLTRCKSCSRIFKDRQSLAKHLVNYHSEYACEICKEKVQSKCEIVSHIRFSHPDCHLFCQDCGNVLRKSEDLKAHSEDHQNSFVCQFCADLLPSKIKLKMHILSLHRKILSLSCGICLKLFETQHVLRDHVRLVHKDVLTPLTSCTVCGKNYGSKWKTFDHLNKSHGRIFKACKACLEVFDTDRDLEVHYESTHGASGKDKSTVASTAGAVKKDAMTATATIKKEADDSGDDKSSYSEESPYEPEESVKISLLEKRLTAVPEKNSHQQQQQQQKKKVSTAAAVSAAKKVKIETDFTPDQNGGNSSKRTVYVNSNDPSFCEICHKTWPAKKHLWQHYIRCHKLVAATVCGICLKTNDNYEMLQAHLQDTHPTLLHGQGFGSNFICRICGRYHNARSKLKLHMAIHENFDWSLLENSYLKTTDAQEEDIEEEDDDINYESLIEQVECSSENDNEEENEETSSSSESDESETEGLKMENESEEEEEEDGEEDGEEDSSSRSGDVIKSEDNSDSEEEEDEDEDFDYSNDGKNMKYARHQDVVDSAVKSISYDDYDYEDQDDQDPEYSDSAQENLNSHEIQSAVDSIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -