Ninv003277.1
Basic Information
- Insect
- Nicrophorus investigator
- Gene Symbol
- -
- Assembly
- GCA_963457615.1
- Location
- OY735140.1:26569120-26572888[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.013 1.2 10.0 0.9 1 23 291 313 291 313 0.93 2 13 0.0018 0.16 12.7 0.1 1 22 318 341 318 344 0.91 3 13 1.6 1.4e+02 3.4 0.4 6 23 392 410 389 410 0.94 4 13 0.002 0.19 12.5 3.3 1 23 416 438 416 438 0.97 5 13 0.00013 0.012 16.3 0.5 1 23 443 466 443 466 0.91 6 13 6.8e-05 0.0062 17.2 7.3 1 23 472 494 472 494 0.97 7 13 8.5e-05 0.0077 16.9 2.5 1 23 500 522 500 522 0.93 8 13 1.2e-05 0.0011 19.6 3.0 1 23 528 550 528 550 0.98 9 13 6.6e-06 0.0006 20.4 0.6 1 23 556 578 556 578 0.99 10 13 9.9e-06 0.0009 19.8 2.6 1 23 584 606 584 606 0.98 11 13 2.1 1.9e+02 3.1 6.9 2 23 613 634 612 634 0.95 12 13 0.00019 0.017 15.8 2.6 1 23 640 662 640 662 0.99 13 13 3.1e-06 0.00028 21.4 0.4 1 23 668 690 668 690 0.96
Sequence Information
- Coding Sequence
- ATGGAGGGCCCAGTTTTATTGTGTGATTCAACGATTTGTCGATTATGCGGCGAGGAAAACGAAAACGGTACCGTTCTTTTTGAACAAGACGAGTTCAAGGAAAATTTAAGTGATCTcgtcaacaaatatttaccgaTAAAGGTGGACAAGGATGGAAAGTTTCCTTGCACTCTCTGTCCTGGTTGCACCATTCAACTGGAAGCAACAAAATCGTTTTTCAACTTAATAATAGATGGTCAAAAGAAGTTGAGGAACTTGTTACAACTGCAGCAGGAAACATTGAAGAGACAAGAGAAGCAGAAGGTGCAGTTGGAACATGCACTTAAAATTGTTAACCCGAGTAGCTCAGTGCAAACTTACTCATTGCAGTCCGATGAGACTggagagaaaatatttatacagaTTCTATCTGAGGGTCCTTTATTCCCACCCGAGCATGAATTATCACTTAGGACGGAAGGTTTGGAAAAACCTAGGAAGAAACGTGGCAGGCCACCAAAATCAGCCAATTCGTTTACTGAAGAGGAACCTTTTGAAATTGTTCAGGAAGTGAAAAATGATGACAATGAAATGACAATTGATATTGatggaaaaagaaaaaggagAATTAAAAAGCCATCCAGATATTCTGAGCAGttacaaGGCAAAGAGTTAGATAGGGTATTTAAGGAAGTAGGTGTTTTTGATGACGATGAAGTATTAAGTGATAGCAATTTGCATTTACTAGAGAATGGTGCTGATACTGGAGAAGTTATTGGGCATATGGCAGATGTTAATGGTGAAAATTTGGCTCAATTAGTGATATCTAAGCATGCTAGCAAGACTAGGAATAAGTGCAAATTGGAAAcagcaACCAAACCAaaggaaaaatatgaatgtgaTATATGCGGCAGGGAGTTTCTGCATCAAGGAAGATTGGAGATTCACAAATCTTTccataaaaacattaaatatcaatGTGGCACAGAAAATTGCGGTTTAGAGTTTGAAACGAAATCTGCGCTTGAGGGTCATCAGCAAATTAATGATCACTCTGGTACGACTTTAATTGAATCATTGgcaaattatGGCCAGGTTGAATTGCCGCAAATTAGCGAAAATTTACCCGAAATTTTAGAAGAAACTAAAACTCCTGATTTGGTTAAACCTGAAgtgaaatataattgcattCCTTGTGCTAAAACGTTCTCTTGCAAGCAGAATTATGAGATCCATATGAATGCTGTACATGAGAATCAAAAGCCGTACGAGTGCGATAAATGCGATAAAAAGTTTCCGTATTTGAATAGTTTGAAATGCCATATGCTTCAACATACTAATAAAAGTTATCCCTGTGATACTTGTGAGAAAGTTTTCAACCATCCGAGTAGCCTTGTGTACCATAAAGAGGCTGAACACAATAACGgcagaaaatttatttgcaacaaatgtaaaaagtgttttaaacataaacaatTGCTTTTGCGTCATCAATTGGTGCACACGAATGAAAGGCCTCACGTGTGTAAACACTGCGAAGCCAGCTTCAAAACGCGTGCCAATTTGTTGAACCACATGCCAACACATACGGGggagaagaaatattattgtacgCAATGCGGTCAATCGTTTGCTCATAAAACTTCCTTAACTTTGCACACGAGATGGCATAATGGACAAAAACCGTATCAGTGCGATGTCTGCATGAAAACCTTTTCGCAAAAAGGAAATTTGGCTGAACATAAAAGGATACACACAGGGGAGAAGCCTTACGCTTGTAGTTTCTGCGGAAGGAAGTTTACCACCTCATCTCAATATAAATTGCACGTGAAGAGGCACACGGGTGAGAGACCCTGGAGGTGCGAGTATTGTTCAAAAACTTTCTTACATAAAGATACTTGGAAATGCCATACGCGTAGGCATAGGAACGAGAGGCCTTATCAGTGTCAACagTGCTTAAGAGGATTCACGGAACATTGGGCTTTGAAAAAGCATCAACGAATGCATACGGGTGAAAAACCATACTTATGCGACATCTGTTTAAAATCATTCGCTGATGCTTCGAATCtaacaaaacataaaaagaTTCATTGGAACAAGAACAaagatattaaacaaaaaattgaagcGCCTGTGTTAAATAATACTGAACAAGGcacaaatcaaatattgtatttggCTTATCAAGATGGTAATACCAGTGAACACCCTCAAACGATGGTACATATTGTTGATAATGAAGCACCAGATAAAATGCCTACTAATATATTCGAAGAGGACGATTTAATTCCCCAGGAGAATACGAATGAAATGTCTATAGACGTACAATTACAGCAGTTAATTGATACTGAAGGCAATGCTATTAACTTGACAACTTCAGATGGGCAACAAATAAAAGTTGTTACCACAATTGGAGCTGAAGACTCTTGCATTCAAGGATTACTGCCAGACGGTACTTTGGTCCCAATCAACTTAACCATGCAAGATGGAAAACCCGTTTCAGCAGAAATGCCCttgaaaaataAGACCGACAATCTTTTAACCGATGATTTGTTGCAAGAGAATATGCAGCTTTTGGAAGATGACAATCAGAAACTTCAGGAggataaaatacaatttttaacagAAGATGGCCAAAACGTTTGTTTTATAACGACTTATATTGATAGTAatccattaaataatgaatatattggcatgtcttaa
- Protein Sequence
- MEGPVLLCDSTICRLCGEENENGTVLFEQDEFKENLSDLVNKYLPIKVDKDGKFPCTLCPGCTIQLEATKSFFNLIIDGQKKLRNLLQLQQETLKRQEKQKVQLEHALKIVNPSSSVQTYSLQSDETGEKIFIQILSEGPLFPPEHELSLRTEGLEKPRKKRGRPPKSANSFTEEEPFEIVQEVKNDDNEMTIDIDGKRKRRIKKPSRYSEQLQGKELDRVFKEVGVFDDDEVLSDSNLHLLENGADTGEVIGHMADVNGENLAQLVISKHASKTRNKCKLETATKPKEKYECDICGREFLHQGRLEIHKSFHKNIKYQCGTENCGLEFETKSALEGHQQINDHSGTTLIESLANYGQVELPQISENLPEILEETKTPDLVKPEVKYNCIPCAKTFSCKQNYEIHMNAVHENQKPYECDKCDKKFPYLNSLKCHMLQHTNKSYPCDTCEKVFNHPSSLVYHKEAEHNNGRKFICNKCKKCFKHKQLLLRHQLVHTNERPHVCKHCEASFKTRANLLNHMPTHTGEKKYYCTQCGQSFAHKTSLTLHTRWHNGQKPYQCDVCMKTFSQKGNLAEHKRIHTGEKPYACSFCGRKFTTSSQYKLHVKRHTGERPWRCEYCSKTFLHKDTWKCHTRRHRNERPYQCQQCLRGFTEHWALKKHQRMHTGEKPYLCDICLKSFADASNLTKHKKIHWNKNKDIKQKIEAPVLNNTEQGTNQILYLAYQDGNTSEHPQTMVHIVDNEAPDKMPTNIFEEDDLIPQENTNEMSIDVQLQQLIDTEGNAINLTTSDGQQIKVVTTIGAEDSCIQGLLPDGTLVPINLTMQDGKPVSAEMPLKNKTDNLLTDDLLQENMQLLEDDNQKLQEDKIQFLTEDGQNVCFITTYIDSNPLNNEYIGMS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01059288;
- 90% Identity
- iTF_01059288;
- 80% Identity
- -