Ninv008483.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nicrophorus investigator
Gene Symbol
SCRT1
Assembly
GCA_963457615.1
Location
OY735142.1:5669532-5673661[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.014 1.3 9.9 0.1 1 23 342 364 342 364 0.95
2 12 2.8e-05 0.0026 18.4 1.6 1 23 372 394 372 394 0.99
3 12 5.3e-06 0.00048 20.7 0.4 3 23 403 423 401 423 0.97
4 12 9.2e-06 0.00084 19.9 1.0 1 23 429 451 429 451 0.98
5 12 0.00014 0.012 16.2 4.9 1 23 458 480 458 480 0.99
6 12 0.00011 0.01 16.5 1.6 1 23 486 508 486 508 0.96
7 12 2.1e-05 0.0019 18.8 0.1 1 23 514 536 514 536 0.98
8 12 7.1e-07 6.5e-05 23.4 1.2 1 23 542 565 542 565 0.96
9 12 1.5e-05 0.0014 19.3 0.7 1 23 571 594 571 594 0.95
10 12 4.7e-06 0.00043 20.8 2.6 1 23 600 622 600 622 0.99
11 12 0.00011 0.0099 16.5 0.4 1 23 628 650 628 650 0.94
12 12 0.0014 0.13 13.0 0.1 1 23 656 680 656 680 0.92

Sequence Information

Coding Sequence
ATGTACGAACTGACAAATTCAAAAAGTATGAACAATTCCCAAGAGGAGTCGAGCAGTCCCATCTGCTTGATATGCAATGGGAAACTGACAAACAGAAGTGCACTCAGGATTTTCGAAGCAGATACTCAAACCTGCTCATCCAGACCATTGAGTTTCATTATTGCTCAAGTCTTGGGTCAAGATATAAATGAAGAAACTGTTCATTCCCCTCTGATATGCAGGAGATGCTTCAAATCCTTCGACGAGATAGATGACATGGAGAGTCGATTGATTGAGGTTAAACTTGATTTGGTcaacaactacaaaaaatCTGTGGCCAAGCACAAGCTTGATGAGAATAATGTTGTGTGCATAATTGAGGAGGTTGATCAGAAGATGGAAGATGAGGATGTGGAGAAGGTTGAGGAGGAGGTGTTGGAGGATCAGGATGTTGAAGAAATCCACATTGCAAAGACCATCTTGAATATTCCATCTTCAGATGATGAAACACAGCAGGAAGGGGAGGATGAGGTGCAGACTGTTGTAATGAAGAAACCCACGTTGCATACCATGGAGGAAATTGAGATGGAATTGGTGAAGATGCACGAGGGAATAGGGAAGCAGGAGGATGAAACGATGGAGGAAGGAGAGCAGGAACTGTACCATTTCAAGAATGACGACGAGGAAGTGGAGATCCATGGTCACATTGGCATCGATCAAGACGATGAACAATCGCAGGATAACACCGAAGCTTTGCTGGAAGCTGCCGCTATAGCAGAGAAGCAGCTCGGCAAAGAGATCAAAATAGAAGCGAACATCGACGATGATCGACCCAACATATtgaaaagaaagaacattaatattttggtgAACAACAAGAAGGAACCACCGCTGAAGAAAATTAAGGAGGAGGTCATCCAGGAAGATATGGTCACTAGGGAAGGCGATTTGTATACGTGTTTGCTGTGCGAGGGCGATGAAACTGTCTGCGGCGAGGCTAAAGCCATTACGCAACACATTAAAGTCGCTCACGATGCTCGTATTTACATTTGCGACGTGTGCGGAGATGACTTCAAGAAACGGACAGATTTATCTCTTCATCTTGATGAGCATGTGGCTACAGAGGAGGGAGACTTCCAATGCGAAGTGTGCAATCGCATATTTAGTAATCTACGATTATTCCGCATCCACAAACGTATGCATTATCCACAAAATAAAGCCTGGGCTTGCGATAGATGCGGCAAAAAATATAGTTCTAAAAATTTGCTGGAAGAACATATGAACACCCACACAGGTCTAAGACCTTATATTTGCCAATTGTGCGGCAAGGACTTTGCTTCGAAATACACGTTCAAAGCACACGAAAAAACACACGAAGTTAGACCAAGACCATTCCAGTGCCAACAGTGTCACAAGTCTTTCTTGAGTCAGCAGAATTTAACGCAGCACGAGCGTACCCATACCggaattaaagaattttcgTGTCACCTTTGCgATAAACAATTTGGTTCAGCACATAATTTAGAGGTACATTCTATAGTTCATACTGGATACAAGCCCTTCATCTGCGGATTATGCGGAAAGGCGTTCGCGCGTAAAGCCGAGATTCGTGATCACGAGAGGACGCACACTGGCGAAAGGCCGTACCAGTGCGAATTCTGCGGAGCCACGTTCAGTCAGCGCTCAAATCTTCAATCCCACAAGAGGGCAACGCATTACGACGATAAACGTTACAAGTGCGATATTTGTGGTAAAGGTTTCAAGAGGAGACGGTTGCTCGACTACCACACCAAAGCCGCTCATACAGGAGAGAGACCATTCAAATGCAACGTTTGCGATGCTACTTTCGTTTATCCGGAACATTTCAAGAAACATCGCAGGATCCACACAGGAGACAAGCCGTTCTTATGCGAAGTCTGCGGCAAAGCTTTCAACAGCAGGGATAATAGGAATGCTCACAGGTTTGTTCATTCCGATAAGAAACCATACGAATGTTTGGTTTGTGGAGCTGGATTCATGAGGAAGCCGTTGCTATATCAGCATATGCAATCGCAAGGCCATTTGAACGATACCATCGTGGTCAATCAGCCACGTCTGACTACAGATGATGATCAGATCATCACGgtTAATGTTAACGGTGAGATGGAGATCGTTGAAGGCGATGTTAGCAGGTTGGAGACAATCGAAGAAGAAAGCAATCAGCAGGAGGATAGTAAGCTTTACATTTCGGAACACGCCATGTTGGTGGACGGTGCTAAAGTACTGGATTCCGAAGGCACGTTGATATTGGGTGATAACGGAGACGAAGCCGAACACATCATAATCGATAGTCAACAAATTCAGTTTGCTGAAGCCGACGAGGCTGACATGGAGGGCGAAGAAGGTGAGCAAATATTGGCTACCACCGAAGACTACGAAAGTCTCCTCACCGAAGAAGCTATAGCGAATGGGCAGACGCAAATCATACAGACTAAAGACGGTCCCATTCAGTTGGTGGCCGTGAGGATTCCGAACGAGAAAGGCGAGGAAGAAGAGGCttggattaaaattttaccaaaCGAAGCCGTCGATGAGTGA
Protein Sequence
MYELTNSKSMNNSQEESSSPICLICNGKLTNRSALRIFEADTQTCSSRPLSFIIAQVLGQDINEETVHSPLICRRCFKSFDEIDDMESRLIEVKLDLVNNYKKSVAKHKLDENNVVCIIEEVDQKMEDEDVEKVEEEVLEDQDVEEIHIAKTILNIPSSDDETQQEGEDEVQTVVMKKPTLHTMEEIEMELVKMHEGIGKQEDETMEEGEQELYHFKNDDEEVEIHGHIGIDQDDEQSQDNTEALLEAAAIAEKQLGKEIKIEANIDDDRPNILKRKNINILVNNKKEPPLKKIKEEVIQEDMVTREGDLYTCLLCEGDETVCGEAKAITQHIKVAHDARIYICDVCGDDFKKRTDLSLHLDEHVATEEGDFQCEVCNRIFSNLRLFRIHKRMHYPQNKAWACDRCGKKYSSKNLLEEHMNTHTGLRPYICQLCGKDFASKYTFKAHEKTHEVRPRPFQCQQCHKSFLSQQNLTQHERTHTGIKEFSCHLCDKQFGSAHNLEVHSIVHTGYKPFICGLCGKAFARKAEIRDHERTHTGERPYQCEFCGATFSQRSNLQSHKRATHYDDKRYKCDICGKGFKRRRLLDYHTKAAHTGERPFKCNVCDATFVYPEHFKKHRRIHTGDKPFLCEVCGKAFNSRDNRNAHRFVHSDKKPYECLVCGAGFMRKPLLYQHMQSQGHLNDTIVVNQPRLTTDDDQIITVNVNGEMEIVEGDVSRLETIEEESNQQEDSKLYISEHAMLVDGAKVLDSEGTLILGDNGDEAEHIIIDSQQIQFAEADEADMEGEEGEQILATTEDYESLLTEEAIANGQTQIIQTKDGPIQLVAVRIPNEKGEEEEAWIKILPNEAVDE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01059264;
90% Identity
iTF_01059264;
80% Identity
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