Basic Information

Insect: Nicrophorus investigator
Gene Symbol: -
Assembly: GCA_963457615.1
Location: OY735140.1:10265330-10268117[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2.1e-06 0.00019 21.9 0.6 1 23 185 207 185 207 0.99

2 15 0.00063 0.058 14.1 0.1 1 23 213 235 213 235 0.97

3 15 6.2e-05 0.0057 17.3 3.0 1 23 241 263 241 263 0.98

4 15 0.00015 0.013 16.1 1.4 3 23 277 297 275 297 0.95

5 15 4.8e-05 0.0044 17.7 0.4 2 23 304 325 303 325 0.97

6 15 2e-06 0.00018 22.0 4.1 1 23 331 353 331 353 0.98

7 15 8.1e-06 0.00073 20.1 0.1 1 23 359 381 359 381 0.96

8 15 2.2e-06 0.0002 21.9 0.1 1 23 387 409 387 409 0.99

9 15 1.6e-07 1.5e-05 25.4 2.1 1 23 415 437 415 437 0.99

10 15 1.3e-06 0.00011 22.6 2.6 1 23 443 465 443 465 0.98

11 15 5.8e-06 0.00053 20.6 1.2 1 23 471 493 471 493 0.98

12 15 1.2e-05 0.0011 19.5 1.5 1 23 497 519 497 519 0.97

13 15 0.0007 0.064 14.0 2.3 1 23 555 577 555 577 0.98

14 15 0.0091 0.83 10.5 0.5 1 23 581 602 581 602 0.98

15 15 1.9e-05 0.0017 18.9 0.2 1 23 610 632 610 632 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2.1e-06	0.00019	21.9	0.6	1	23	185	207	185	207	0.99
2	15	0.00063	0.058	14.1	0.1	1	23	213	235	213	235	0.97
3	15	6.2e-05	0.0057	17.3	3.0	1	23	241	263	241	263	0.98
4	15	0.00015	0.013	16.1	1.4	3	23	277	297	275	297	0.95
5	15	4.8e-05	0.0044	17.7	0.4	2	23	304	325	303	325	0.97
6	15	2e-06	0.00018	22.0	4.1	1	23	331	353	331	353	0.98
7	15	8.1e-06	0.00073	20.1	0.1	1	23	359	381	359	381	0.96
8	15	2.2e-06	0.0002	21.9	0.1	1	23	387	409	387	409	0.99
9	15	1.6e-07	1.5e-05	25.4	2.1	1	23	415	437	415	437	0.99
10	15	1.3e-06	0.00011	22.6	2.6	1	23	443	465	443	465	0.98
11	15	5.8e-06	0.00053	20.6	1.2	1	23	471	493	471	493	0.98
12	15	1.2e-05	0.0011	19.5	1.5	1	23	497	519	497	519	0.97
13	15	0.0007	0.064	14.0	2.3	1	23	555	577	555	577	0.98
14	15	0.0091	0.83	10.5	0.5	1	23	581	602	581	602	0.98
15	15	1.9e-05	0.0017	18.9	0.2	1	23	610	632	610	632	0.98

Sequence Information

Coding Sequence: ATGGATTTGAGTGTTTACCTTTCGGCCCCATTGCGAATAGACAAGATATGTCGGGCATGTTTAACAGAAAAAGACAAAATGACACCCCTTTTCGGGGCCTGCTTAGACGATATGCTATTGTCTTTTGCTGCCATTCAGgTGCATGAAGGAGATGGACTACCAAATCAGCTATGCATTCAATGTGTTCAAGTATGTAGCAGAGCTTATGCTTTCAAACAGCAATGCGAAAAGTCTGAAGCTATTTTAAGGAGCTATAATAGCCCAGAATTTCaggaaCAACTTGCGCAATCTCTTGCCTTACAAGAGAAGGATGAGCTTGAACATCAGCTTGAATATTCTGAAGAGATTGATCATGTTGTTATTAAAGAGGAATTGCCAAGTGAATTTGGGAATGTTAATTATGTAGAAGGAGTATGTTTAGAGGACAAAACGGAATATTATAGTATAGATAATATTGTGGAGTCAATAGGAGAAGAATTAATTGTCAAACATGCAGAGACTTCAGAGTTGGATGATAAAGagattaaattagattttgtcGGTAAACAAAAGTATCAATGTTCTAAATGCGACGAATCGTTCAATCTGAAAGTAGATTTGAAAGTGCATATGCTTAGTCATCCGAAGGAATTGAACTATGTATGTCCGGTATGTAATAAAGCATTTCCAGAAGCTCGAATACTTAAAAGGCATTCGAAAATCCACTTGGAGAAGAAACCGCATCAATGCGATCAATGTGAAATGTCGTTTGCAGAGAGTTCTAATTTGAGTAAACACAAGAAAAAGCATACTGGCGAGTTAAGGAACATTAAAGGTAAACCTCATCTTTGCTCGGTTTGTGGACGAGCATTCAAGTGGGCGTCGAGTTTGTCCAAACACATGAAATACCACACaggacataaattattatcctgCGAATACTGTAATAAGCAATACGTTGaagcTAGAAGTTTAAAGATTCACATTAGATCGCACACGGGAGAAAGACCTCACGTGTGCAAAATATGCCAAAAGAGTTTTACGCAAATCTGTAACTTGGAGAAACACATTAGAGTGCATACAGGTGAAAAGCCGTACTTGTGTCCCGTTTGCGGAAAAGGCTTTACGCAATCCGGTTATGTCGGCATCCATATGAGACGTCATACTGGCGAAAGACCGTACCAATGTTCGACTTGCGGAAAAGCGTTTGCTGGTTCAAACACTTTGGCAATTCATCAAAGAATTCACACCGGTGAAAAACCTTACACTTGCAATATTTGCGGGAAGAGCTTTAGCAGACACGAAACGTTGGTCATCCATACGCGATCTCATACCGGCGATAAACCGCACGTTTGCAGTATTTGTAGCAAAGCCTTCACTTCATCCGGTCATCTCTCCGGTCACATGAGGACTCATACCGGTGAAAAGCCGCACGAATGCATGAAATGCGGAAAACGATTCGCAGGTTCAGGAAGTTTGAAGGTCCATCTGAAAACCCATTCGGAAACGCATGAATGCCTAACCTGTGGCAAACGtttcaatgGCTCCAACGCTCTGAAAGTGCACATGAAATCACATTGTGAAGGATACGAAATTACCACAGAATTGAAATCTCAGGAAATCGATAAAACGCAAGCCGATGAATACGAATTAAAGGATCACGACCAACAGCACGTTGAAGAATACGAGTGCTACAAATGTCTAAAAagATTTACAGATGAAAATTTCCTCAATATGCATTTGAAATCACATAAtgataaatatgaatgtttcACCTGTGACCAAagTTTCGACGgcgataatataaaaattcaccTGAAATCGCACGAAGGTCATTACGAAGATAGGTTCGAATGCAGAATATGCGGCAAGGCGTACGACAAAGCTTTCAGTTTGGAGATTCACATGAGCTCTCATTCGCTACTAGAAAAAGAAACGCTAAGCAAAGTAGAGACCGTGCAGATTGCTGAATTATTGACCGGCGAGACTATACACACGGTGCAGGTACAAACGTTGACGTAA
Protein Sequence: MDLSVYLSAPLRIDKICRACLTEKDKMTPLFGACLDDMLLSFAAIQVHEGDGLPNQLCIQCVQVCSRAYAFKQQCEKSEAILRSYNSPEFQEQLAQSLALQEKDELEHQLEYSEEIDHVVIKEELPSEFGNVNYVEGVCLEDKTEYYSIDNIVESIGEELIVKHAETSELDDKEIKLDFVGKQKYQCSKCDESFNLKVDLKVHMLSHPKELNYVCPVCNKAFPEARILKRHSKIHLEKKPHQCDQCEMSFAESSNLSKHKKKHTGELRNIKGKPHLCSVCGRAFKWASSLSKHMKYHTGHKLLSCEYCNKQYVEARSLKIHIRSHTGERPHVCKICQKSFTQICNLEKHIRVHTGEKPYLCPVCGKGFTQSGYVGIHMRRHTGERPYQCSTCGKAFAGSNTLAIHQRIHTGEKPYTCNICGKSFSRHETLVIHTRSHTGDKPHVCSICSKAFTSSGHLSGHMRTHTGEKPHECMKCGKRFAGSGSLKVHLKTHSETHECLTCGKRFNGSNALKVHMKSHCEGYEITTELKSQEIDKTQADEYELKDHDQQHVEEYECYKCLKRFTDENFLNMHLKSHNDKYECFTCDQSFDGDNIKIHLKSHEGHYEDRFECRICGKAYDKAFSLEIHMSSHSLLEKETLSKVETVQIAELLTGETIHTVQVQTLT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -