Ninv010419.1
Basic Information
- Insect
- Nicrophorus investigator
- Gene Symbol
- bab1
- Assembly
- GCA_963457615.1
- Location
- OY735142.1:27943542-27957348[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 8.5e-12 1.8e-08 34.2 0.0 1 39 385 424 385 428 0.90 2 4 3.5e-13 7.6e-10 38.6 0.2 1 39 439 477 439 480 0.95 3 4 1.9e-19 4.2e-16 58.6 0.0 1 45 494 539 494 539 0.98 4 4 8e-17 1.7e-13 50.3 0.0 1 39 546 585 546 588 0.94
Sequence Information
- Coding Sequence
- atgtcTGGCCAACATTACTGCCTGCGATGGAACAATTATCAAACGAATATGACTTCGGTGTTCCATCAGCTTTTGCAGAATGAAGCTTTTGTCGATGTCACATTGGCATGCAACGATTTATCATTAAAAGCGCACAAAGTCGTATTATCCGCCTGTTCCTCTTACTTTCAAAAACTCCTTCTAGAGAATCCGTGCAAGCATCCCACGATCATAATGCCACAAGACGTGTGCTATGCCGATCTGAAATTCATCATTGAATTCGTATACAAAGGAGAAATCGACGTTTCACAAGCAGAATTGCAGtCGATATTAAAGACGGCGGATCAGCTTAAGATAAAGGGATTGTGCGAGTCGCCCGAGGAGAGGCTGGAGGGAGATCCGGAAGCAGACCTGAGTAATTCCGGGTTTCCGTTCGCGGCTCGCGATTACCCGAAGATCCGACGTCGCGACGGGGAGTCTCCGTCGCACGGCGGCGCTGACAATAACAACCGGAAACAGCGGCACCGGAAGTCGACGGCCGAGTCATCTGAGGCTGGGACGGCGGCAGCGGTTGCGGAGGTGGTGGTCGAGGGAGGGCGAGAGGAGCCCGAAGCGGAGGCGCCGCCGGAAAACTCGAACGGACACGTTTCCGGTCCAGACGGGGCCGAAGAGAAGGACGCTGTAGATGAGGACAAGAACAATAAGCCGCTTAATATGAGCAGTAATGCCCTGCTGACTGGCCAAATGCTATTTTCACAGTTCGGAGTTGATAATGAGGACTTTCCTCCGGAACCTCCGGCACCCACTGCGACTCCAGTGAGGCACGTGGACATGCAAGAACATTCGCCCGCCCGCACTCTTCTCACGAACTCTTCCCTACACAGGACCGACCTATCAGACCCGCCAAACACTAAGTTCAGAGACGTCAAAAAGGAGATCAAGTTCGAGACGTTGAGATCGTTCGAACAGGAATCTCTATTAGACATCGACAGCTCGCACCATTCGATGGACAGCCACGACGGCGACCATTCGATGCACCACACCACCATGATGATAACGCCGGAACTGATGGGTCTGATGCCGCCCGGCACCCATCGAATGGGTACGTATCACGGCTTCAAAGCTAACGGAGATCTGCACGGATCTAGGCACGGCGGTGGACCCAAAACATGGACGCAGGACGATATGGAGATGGCACTGGATGCCCTACGGAATCACAACATGAGTTTAACTAAGGCATCTGCGACTTACGGAATTCCATCGACAACTTTGTGGCAAAGGGCGCACAGATTGGGAATCGATACGCCGAAGAAGGAAGGGCCGACGAAATCGTGGACGGAGGAGAGTCTGAACTCGGCTCTGGAAGCCCTCAGAACGGGAACGATTTCTGCGAATAAAGCGAGCAAAGCGTACGGCATCCCGAGCAGCACGCTCTACAAGATCGCTAGGAGGGAAGGAATCAGATTGGCGGCGCCCTTCAACGCCGCACCGACGACGTGGACGCCCGAGGATTTGGAGAAAGCGTTGGAATCGATAAGATCCGGGCAGACGTCGGTGCAGAGGGCCTCCACAGAGTACGGCATTCCCACGGGGACGCTGTACGGTCGATGCAAACGCGAGGGCATCGAATTGTCCAGATCGAATCCCACTCCGTGGTCCGAAGATGCGATGGGCGAAGCATTGGAAGCAGTTCgGTTAGGACACATGTCCATCAACCAGGCCGCAATCCACTACAACCTGCCCTACTCATCCCTGTACGGAAGGTTCAAGCGCGGGATTAAATACGATTCGGATTCTATCGAGGCCAGCACGGACAGCCAATCGCAGCTCGAGAGCCCTTCCATGATGATGGACTACTCGAACCAACACCCAGTACAATACCAAAACCAATCGAATAGCTGA
- Protein Sequence
- MSGQHYCLRWNNYQTNMTSVFHQLLQNEAFVDVTLACNDLSLKAHKVVLSACSSYFQKLLLENPCKHPTIIMPQDVCYADLKFIIEFVYKGEIDVSQAELQSILKTADQLKIKGLCESPEERLEGDPEADLSNSGFPFAARDYPKIRRRDGESPSHGGADNNNRKQRHRKSTAESSEAGTAAAVAEVVVEGGREEPEAEAPPENSNGHVSGPDGAEEKDAVDEDKNNKPLNMSSNALLTGQMLFSQFGVDNEDFPPEPPAPTATPVRHVDMQEHSPARTLLTNSSLHRTDLSDPPNTKFRDVKKEIKFETLRSFEQESLLDIDSSHHSMDSHDGDHSMHHTTMMITPELMGLMPPGTHRMGTYHGFKANGDLHGSRHGGGPKTWTQDDMEMALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEESLNSALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLEKALESIRSGQTSVQRASTEYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGIKYDSDSIEASTDSQSQLESPSMMMDYSNQHPVQYQNQSNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01058526;
- 90% Identity
- iTF_01058526;
- 80% Identity
- iTF_01058526;