Nvir000899.1
Basic Information
- Insect
- Netelia virgata
- Gene Symbol
- -
- Assembly
- GCA_951802705.1
- Location
- OX637863.1:11827496-11835391[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 5.5e-05 0.0046 17.5 1.5 2 21 379 398 378 399 0.94 2 12 0.0049 0.41 11.4 1.0 1 23 427 450 427 450 0.94 3 12 3.5 2.9e+02 2.4 0.1 2 23 1336 1358 1335 1358 0.89 4 12 0.25 21 6.0 0.1 2 20 1436 1454 1436 1456 0.91 5 12 0.058 4.9 8.0 0.2 1 23 1516 1539 1516 1539 0.90 6 12 0.9 75 4.3 0.1 2 19 1599 1616 1599 1619 0.91 7 12 0.35 29 5.5 3.1 1 23 1660 1683 1660 1683 0.91 8 12 0.15 12 6.7 0.0 1 20 1722 1741 1722 1743 0.94 9 12 4.3 3.6e+02 2.1 0.2 1 23 1750 1773 1750 1773 0.88 10 12 0.72 60 4.6 0.0 2 19 1910 1927 1909 1930 0.92 11 12 0.0039 0.33 11.7 2.5 1 23 1937 1959 1937 1959 0.98 12 12 0.0074 0.62 10.8 0.3 2 23 2418 2440 2417 2440 0.94
Sequence Information
- Coding Sequence
- ATGCCTCGTGTTAAAGAAATCGGCAAAAGTAAAAgacttttcgatatttcatccGAACTACTGATATCTAAAAAGAAACACACTGATGCTGAAGCCATAGATAATATATCGAGAGTATCTTGCACCGACGAACCATGTATCGCTGAAACAATCATTGGTGGTGCATCTGAAGATAAAATCAAGAATGGTATAGTGGACGAAGATACACCACGGGTTCTGCGCTCCAAAGGCACAGGTGCTGCGCTCATCAACGACTCATCGAAACTTTGTCGTCTTAAAGAGATCCGCAAAGGTAAAAgattcttcgatatttcagCCAAACTAGTAAACTCCAAAGAGAGAAACTCTGATACTAAAGTCATAGACGACCTATCGGGAGTATCTCGCGTTACTGAGCCATACAACTCTGAAAACAACTTGGATGATGCATTTACAGAGAAAACCAACGATCACACAGTCAGCAAAGATTCACCAATGGTTCTGCGCTTCAGAGACATAAGTGATAAACTCATCGACGACTCATCGAAAAAACCTTATACTAAAAAGAttcgcaaaaataataaactattCGTCAATTCATCTAAAGTACTAAACTCTAAAAATAAACTCACCGTCACTAGACGcgtcgataaattgaaaaattttcagcCTAATAAGCCCTGCAATACTGAAAAGTGCATTAATGGTGCATCAAAAACGAAAACCAATCATGCCAGCGTCGACGAGGATGCATTACTTTCTCTGTGCTTCAAAGACGTGTGTGCCAAACtcatcgacgatttatcaaaaataccTCGTACCGAAAGGATCCGCAAAAACGTAAAACTTGTCGATAATGTATCTAAAGTATCAGGCTCTAAAAAGAAATGCACGCATGCTGAACTTATCGATAACAAGTTGAAATTATCTCACTCTAATGAGCCATGCAATGCTGAGAACAACGTCAATGATACGTCGCACGAAAAAACCAACGATGGCAAACTCGTCGAAAATTTACCAACTGCTCTGTGCTTGGAAGATAAGCGGAGTAATCCCAAACTCATTGACCATCCAACGAAAATACCTGCATATACGATAGCACCGACGTTGAAGAAATTAAGCTGGCATAGGAattgcttgaaaaaaattatctggCGCTGCGACATATGTCATTTGGAATTTACAACTAAATACAATCTTCAAAGACATACGAAACGTTATGCGAAGCCACAGGTTCCGTGCGATAATACCGGTACCAAATTTCCGGACATTAAGCAACAATGTTGGGGTGTCGCGAGCTTCAAATGTCCCATTTGCAATCAAACATTCAACGTCGTAGGTCCTTTCCAGGCTCACATGTATCACTATCATGATGGTGGACCGGGGACGCTTCAACAGAAATATATCGCTAGGCTTCTAATGAGCGCaacatcgaaaaaatcgaacgttgaAGTTAAcagaaaaaacgtgaaaaatacgGAGAAAAGTTGTACACAAATATCGAAACAACCAATACTCCCAAAACCCGTCCAAGCTGCAACGCAACGTAAAGGAAGTTGTGCGATCAAGGAGACGATGGACGAGAACGAAATAGCTACGACGGATGATGCGAAGGTTATCGAGATATCCAAGACAACGATTTCTGAAGTTGAGATCGAGAATAAAAGCGATGGGGAATCTCTGGGACATGAGCAGAGGAAATTTGCAATCTTgaataatatgaataatagAGAGCCGCCGAAACATGTTAAAAACAGTCTGGTAGAATCGGAGATTCGCATCGGCGACAAGGACGAGGAAACGATGGACAACTCAGCGGATAAACACGAAATTCGATCCTCCGATATGCGTGCTACTGTTGCAAAAGAAAACTATGTGGCAGAAGAATCGTTCCAAGTTTCCCAAAATTGtgaagaaattgaaaagaCTGATAGCATCCGACTCGTTGAAGATTCGAGGTTGGATGTGCTGGAATATGAGAAAACGGACGAGCAGCGCAAATTGACCAATCCTTCACAAATTTGCGAGGAATCCGGAATCATTGGTAGGAATGGAGTTTTTAATGACACGAGTATTAATATGACTGAAGAAAAGGATATGGCAGAGGAGCAATTTGAATTGTCCCAAAATCGCGAGGGAACCGACAATGTTGATAAGCGTGGAGTTTTAAACAATGCAAGTGATAATAttgtcgaaggaaaaaatatgacGGGGAAACTATTTGAAAGTTCTCCAAATTCTGAAGTAATTGAGAAGACTGTTGGCGTTATAAATGCGGTTGATCAGGAGAAACCACCTGAAATTTTACAAGACTGCGacgaaatcgaaaattctgacaaaaatataactttcAATGAAACAAGTATTATTAACGTGATGGAAGAAAAGGATAAGGTTGAGAAACCAttcgaaattttacaaaattgtaagACAATTGTAAAAGCTGCTGACATTCACCTCATCGATGACCTGAGGTTGAATGAATCTGATGAAATGAATGAGCAGAACAAATCATTTGGAATTTCGCTAAATATCGAAGACGCAACAAATACTGATAAAAATGAAGTTTTGAATGAGCCAATTGTTAACGTTCCACACGAAAAGGATGTGGGAGAGGAACCATTTGAAATTTCTCTAAATTgcgggaaaattgaaaaatttcctagTACTCGACTTGTTGACAATGTGAATGTGAATGAATCTGAAAAGAGTGATGAACCGGATAAATCACTCggaatttcacaaaaatataaGAACAATTTCTCGACGGATAAAAGCGGAGTTATTCAGAACTCTAGTGACAGCGAGGCTGAGGAAACTGACTACGAGACATCACTCGAAATTTCGCACAATTTCGAGGAAACTGAGCGCATCGATGAATCCCGACTTATTGCTTACACCAATTTCAATCTGCTTCGAAAAATGCACGGTACGAAAGAAATACCAAACATTTCGGAAAATTTCGAGGAAAGTAATTATAGAAGTTTCGACAGTGACGTAACAAGTATCGATTCAATGGAGGGAAGTGAATCAGATCAGAGTGAGATTGCCGAGGCACTCGACGATATTCTTCAAGACGCATATGAGAAGCCGGATGATCCCGTTACCGAGGCGAgcctcctctttttttttaacatgaaCAATTTAGTAAATGAATTGGAAGTTCTattagacaaaataaaaatatcgaacgaggagaagaaatcatcaacaattttgaaaGATGATGAGAAAACTGGCAAGATTAATTTTCTTACTAACaacatgaaaaataacgaggcATATCATTTAACCCGTCCAAATCGAAGTGACCTCACCAAATTACATAACGAGAGTTCTCGAGAAATGCTCAAAAATGACTATAAAAAAAGTACGTTTGAAAAAAGGGATGCCGTGAACAGGAAACAGAatgaaacgtcgaaaaatactGAAAATGATAACATGAAATCGGACAATGAAGTTCGCGTCGTTAACGAAAAGTTTTCTGCTAGTGTATCAGACAAAATCGACGCTCCATTCTCAAACACAATCAACAATGGACCCGCAGTCAAGTTCACGATTCCagaaattctcgaatattcgaataattatgagaaaatCGATCTAGCCGATAATACGATATCACTGAATTTCACCGAAAGAACGTACGGAAAACACATTGcgctcgaaaaatcgcgagatGGTGGGAATGTTGAGAATAAGAATACCAACGATTTTAGAAGCGACGACAGTTCTTCGTCAGATTCCGAGGAATCGATTCTGAGCGAGTTCGCCGATGCAATAAATGATATTCTTAAAGAATCCCTCGAGAGCGACGAGAAAAGTTCTCTTCACAAAATGAGTAGATTCGAGCATGACGATGTATTGAGAGCTCAATATTCGTGCAAACATTGTTACGTATCGATAATGAGACTAAACATCAATGATCTGAAAGCTATCAAATCGAAGAAATCGACTGCTGAAACAATCGACGAACGTCCGGCAGAAAGAACGGAGTGCCAAGCGAATTCCTCATCCGTAGTTTTACCTTGCTCCATGTGTCCGGAAATGTTTTTGACAGAAGCATTGCGAAGGAAGCACATCGATAACGTTCATTGCAACGTACCACATCGATATTACAATCAAAAAGCACCAATGGGACAGCCATCACGCCGCCGCTGCCGAACTCGTCATTTTGCTGATTGCGACGACAAAGAGACCTGTGAGTGCGATAAAGATCTAATAGGACGTCGAACATCGAACGATCAACGTCGCGGGAAAAATCGAGCAGTAAAACGATTTCCGAAGATTACGAATATGCCGAATCGGTCATCGGATAAATGTGAGCGTTGCCCAAATTGCGGAGAGACGTTTTGGTTACAATCTTTCCTCCAACTGCATTTGTTGCAGTGTAAACAATTCCCACCGATCGAGATGCTTCCTCAACGGGACATAAAGAAATTCAGAAGGGAATTTGGCCAAGGTTCGATGCATCCGGGCGAGCGTGCGTGCCGTATTTGCAACGGTCTGTTTCAAAGTTCCGACAAACTTTTGCAGCATGAACAACTTTATGCCCGTGCGAAGATCCATCGTTGTTCGGTATGCGGGACGGGTTTTCCGGACGTTAATCTCTTGTACGATCACACGACCGCGGCTCACGTATCCGGCGCTTACGTCTGTTACTGCCCACTTTGCCATCAGGGCTTCACAGGCGATTTGCAACGAAATGTCCACACGATGCACATACACGATGACAAAGTGATGATTGACAGGACAATCAGGGACTCGCCACCGATTCTTCACTTGGAAAAGAAAAGCGACGACGTTTCCATCCGCAGGTGTGACGTTTGTCAATTGGTTTTCATCAACCGCAAGCGTTTCATCGAACATGCGATTTACTACAAGAGAGACACGAGCATTCATTGCAATCTGTGCAACGCGGAGTTTGACGGCCAGTACAGCGCTCACAGTCACAACAAGATGCTTCACTATTCGGCGGAAATGAGAAATGCTTATCCGCATCGTTGTATGGTTTGCCGCGAAGGTTTCATCTACGAGAGACATTTGCAGGCTCACGTGTATCATGTTCATCAGAAGCCTTTCAAGCGATTGGGTTCTTCAGACGTTCGGCGAGTGACTGGTCTCCCGCCGATTGCGAAAAGGTCGAGTGGTTGCTCGATGTCGCCGAATGGCCTTGGAAAAATGTACACATGCAACGTTTGCGAGATGAGCTTTCTTACCGCTGATCTTCTCGCCGTTCATCACATTGAGTACTCGAAAGGCGGCCGCTTTTCGTGTACTCgttgcgataaaaattggcaaatGGCGTCTCTGCTCCTCGATCATCTGTCGTTGAATCACTCTGAGCCGGTAATCGAGTGTGTTAGGTGTCTTTCTTGTAATGAGAGTCTCCTCAATCCTTCAGATGGGATGTCTCACGTCAagcattttcattcgaatgatCCGAAAGACTCCTCGGAATTTTACGTCGAGATGAACATCGCATCTGTCAAGCATTTCGGTATTAACCAGAGTGATCTGATACCCAAAAATCGCCTGATATCTGACGGATcggcgtataaaaaaatagaaatggaGATTGATAGAGATCGGAGTGGCAGAGCTGTAAGTCTCATTGACGCGACGAAACtcgagaaacagaaaaagacaCAGAAAAAGTTGAGCGAACAGCaaactgaaaaacaaaaaatcatagggCAAGCGTCGAGCGATCAACAAATCGAAAAACTCgccgatgagaaaaaatggcCATGCGCCGTTTGCTCGGTGAATTTTCGTAGCTCGACTGAACTCGGGAAACACGCATCACTCTGGGCGGACGAAGGTTCCTACATGTGCGAGGTATGCGGCAGAAGATTCAAGTTGAGGAGATTTTACCAGGAGCACCGGATGAAACACTTCCGTTATCATGCTAAAGAGGATCGTCACTTCTGTGCTTCGTGTAACGAGGGATTCGAGACGATGCAGTTAATGACGATGCACAAGGCACATGtgcatagaaaaaaaactgataaaCTTTCGTCTGAAGCTTTGGAAGTGCCGAAGGTCGCCCCTAACTCTAATCAGACTCGGCGATCGGTCCCTCCGCGGGAACGAACAATCTCCGCCTCTTCAGCGGATTCGCTGAATCTACGTGAGAAGAGATCGCATCGTCAGAAAAAACATTCGGTCGACGATGTACCTTACGATCTGGTGACGCTCGACTCCGGCGCGGCCATTACTATGGATGattcaaaaaaatcttcgacccTTCCATCTAGTACCGCAGTGAAACGTAAGAACGTCGAGGTAATCacaattatcgacgaattgcCAAATGCCGTTCCGGTGAAAGTTCTTGCGTTGAAAAAGTTTATCATCAAACCTACGAGCAACGCGAGGATAAGCCAGCTGACAAGAGTAAACGAACAACTTGCTTCCAGTTTAAATTTGCACTTCGTGGGAGATACAAGCGCCGTTCCAGCAGCATCGAAGGGAATAAATGTCGCGTTCGGCGCTACTGTGGCGCCAAAGGATTCGGAGATGCGGACGATCGAGTTAAACGACTCAAATGCGTGGCCAGTAGCGTTAAACGCTACGAATGTACTTCCGGTAACATTAAGCGGTATGAACGCTCATGGAATAACAGTAAATGGTGCGAACTCAGGTCTAATGGCGATAGACGCTACGGATACTCAACAAATGGTGAACTTTACGACCACATCTCCAGTGCTATCAAATAATAGAAACGCGACGAAAGCACGCCCGGTAGTGTTGGCAGTACCACTGAAAACTTCAATCAAGCATGCAACAGTGCCAAACGCTATAATCAGACATCCAGTATCGCAAAGTGCTGCAGTCAGACATCTAATAGCGTCGAACGCTGCACTCAAGCATACAACAGTGTCAAACGCCATCGTCAGATATCCAGTAACGTCAAACTGTATAATTAGACGTTCAGTAACATCGGACACTCCGAATACAGACAGTGTAGTGTCAAACGTTACAAACGCATGTCCAGTGATGACTGATGTCACAATTAGACGTCCAGTAACGGCAAACACTCCGAATATCCGCGGTCTAGCGTTGAACGTTATAAAAGCATGTCCAGTAACGCTAAACACCCCGAGTACATCCGTGTTAGTGTCAAAAGTTACAAATGTATGTCCACCAACGCCAAACGTCACGATTACACGTTCTGTATCGTCACCCCCCACAAGGAACATTTTCGTGACCGTAGTTAAAACGCCCGAGGGTACCAGCATTGTGCAGAAGAATTCTTTCAACATATTGAGATGCAAGTCTTGCAACATCATGTTCACCAGTGTCGATCAGTTGAACAGTCACGAGCTGAGTGTTCACGGCTTGAAAGCAACGAGTATTCAGAGCATCGATGATATCACGCTGAGGAAGGATAACCCTTCCGGGTCACTGTTGAAAACATCCTTAACAGAACTTCAATGGCTCGTCAATTCGCTACCGGTTACATCGAATCGTCCGATCGACAGAATACATGTTACAAAGCATCATGCCGATCTCGATTTTCAGGCAGTAAACTCACCGATTACTGCGGCCAAGTGTTACAAACTTATGAACAAAACTTTCGATGGTACGCAAAAATCAACTACTGCTCCTCCGTCAGCTGTCGCGACAGCTGATGATGCACCTGAGTGTACAATCCTAATCGATAAAGAGTCGTCGCACCACGTGCCTGCAAAGAGCACGGTTCAAAATATCACCGGGTCCTTGAATCAACCGCGACGAAAGGCTGttacaaagagaaaaagcgaaCCAACGGCGATTCTTCAGCAGGAGGAGAAAAGATCCAGAGAAAGCTCTTATGATCCAAAAGTGTTTGAGGAATTTTGCAGACAACACAGCTTAACGGCACGCTCTACTATTAAGAAAAAGGAAGTGTCGGTTATTACCCTCTTGTGA
- Protein Sequence
- MPRVKEIGKSKRLFDISSELLISKKKHTDAEAIDNISRVSCTDEPCIAETIIGGASEDKIKNGIVDEDTPRVLRSKGTGAALINDSSKLCRLKEIRKGKRFFDISAKLVNSKERNSDTKVIDDLSGVSRVTEPYNSENNLDDAFTEKTNDHTVSKDSPMVLRFRDISDKLIDDSSKKPYTKKIRKNNKLFVNSSKVLNSKNKLTVTRRVDKLKNFQPNKPCNTEKCINGASKTKTNHASVDEDALLSLCFKDVCAKLIDDLSKIPRTERIRKNVKLVDNVSKVSGSKKKCTHAELIDNKLKLSHSNEPCNAENNVNDTSHEKTNDGKLVENLPTALCLEDKRSNPKLIDHPTKIPAYTIAPTLKKLSWHRNCLKKIIWRCDICHLEFTTKYNLQRHTKRYAKPQVPCDNTGTKFPDIKQQCWGVASFKCPICNQTFNVVGPFQAHMYHYHDGGPGTLQQKYIARLLMSATSKKSNVEVNRKNVKNTEKSCTQISKQPILPKPVQAATQRKGSCAIKETMDENEIATTDDAKVIEISKTTISEVEIENKSDGESLGHEQRKFAILNNMNNREPPKHVKNSLVESEIRIGDKDEETMDNSADKHEIRSSDMRATVAKENYVAEESFQVSQNCEEIEKTDSIRLVEDSRLDVLEYEKTDEQRKLTNPSQICEESGIIGRNGVFNDTSINMTEEKDMAEEQFELSQNREGTDNVDKRGVLNNASDNIVEGKNMTGKLFESSPNSEVIEKTVGVINAVDQEKPPEILQDCDEIENSDKNITFNETSIINVMEEKDKVEKPFEILQNCKTIVKAADIHLIDDLRLNESDEMNEQNKSFGISLNIEDATNTDKNEVLNEPIVNVPHEKDVGEEPFEISLNCGKIEKFPSTRLVDNVNVNESEKSDEPDKSLGISQKYKNNFSTDKSGVIQNSSDSEAEETDYETSLEISHNFEETERIDESRLIAYTNFNLLRKMHGTKEIPNISENFEESNYRSFDSDVTSIDSMEGSESDQSEIAEALDDILQDAYEKPDDPVTEASLLFFFNMNNLVNELEVLLDKIKISNEEKKSSTILKDDEKTGKINFLTNNMKNNEAYHLTRPNRSDLTKLHNESSREMLKNDYKKSTFEKRDAVNRKQNETSKNTENDNMKSDNEVRVVNEKFSASVSDKIDAPFSNTINNGPAVKFTIPEILEYSNNYEKIDLADNTISLNFTERTYGKHIALEKSRDGGNVENKNTNDFRSDDSSSSDSEESILSEFADAINDILKESLESDEKSSLHKMSRFEHDDVLRAQYSCKHCYVSIMRLNINDLKAIKSKKSTAETIDERPAERTECQANSSSVVLPCSMCPEMFLTEALRRKHIDNVHCNVPHRYYNQKAPMGQPSRRRCRTRHFADCDDKETCECDKDLIGRRTSNDQRRGKNRAVKRFPKITNMPNRSSDKCERCPNCGETFWLQSFLQLHLLQCKQFPPIEMLPQRDIKKFRREFGQGSMHPGERACRICNGLFQSSDKLLQHEQLYARAKIHRCSVCGTGFPDVNLLYDHTTAAHVSGAYVCYCPLCHQGFTGDLQRNVHTMHIHDDKVMIDRTIRDSPPILHLEKKSDDVSIRRCDVCQLVFINRKRFIEHAIYYKRDTSIHCNLCNAEFDGQYSAHSHNKMLHYSAEMRNAYPHRCMVCREGFIYERHLQAHVYHVHQKPFKRLGSSDVRRVTGLPPIAKRSSGCSMSPNGLGKMYTCNVCEMSFLTADLLAVHHIEYSKGGRFSCTRCDKNWQMASLLLDHLSLNHSEPVIECVRCLSCNESLLNPSDGMSHVKHFHSNDPKDSSEFYVEMNIASVKHFGINQSDLIPKNRLISDGSAYKKIEMEIDRDRSGRAVSLIDATKLEKQKKTQKKLSEQQTEKQKIIGQASSDQQIEKLADEKKWPCAVCSVNFRSSTELGKHASLWADEGSYMCEVCGRRFKLRRFYQEHRMKHFRYHAKEDRHFCASCNEGFETMQLMTMHKAHVHRKKTDKLSSEALEVPKVAPNSNQTRRSVPPRERTISASSADSLNLREKRSHRQKKHSVDDVPYDLVTLDSGAAITMDDSKKSSTLPSSTAVKRKNVEVITIIDELPNAVPVKVLALKKFIIKPTSNARISQLTRVNEQLASSLNLHFVGDTSAVPAASKGINVAFGATVAPKDSEMRTIELNDSNAWPVALNATNVLPVTLSGMNAHGITVNGANSGLMAIDATDTQQMVNFTTTSPVLSNNRNATKARPVVLAVPLKTSIKHATVPNAIIRHPVSQSAAVRHLIASNAALKHTTVSNAIVRYPVTSNCIIRRSVTSDTPNTDSVVSNVTNACPVMTDVTIRRPVTANTPNIRGLALNVIKACPVTLNTPSTSVLVSKVTNVCPPTPNVTITRSVSSPPTRNIFVTVVKTPEGTSIVQKNSFNILRCKSCNIMFTSVDQLNSHELSVHGLKATSIQSIDDITLRKDNPSGSLLKTSLTELQWLVNSLPVTSNRPIDRIHVTKHHADLDFQAVNSPITAAKCYKLMNKTFDGTQKSTTAPPSAVATADDAPECTILIDKESSHHVPAKSTVQNITGSLNQPRRKAVTKRKSEPTAILQQEEKRSRESSYDPKVFEEFCRQHSLTARSTIKKKEVSVITLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -