Basic Information

Insect: Netelia virgata
Gene Symbol: -
Assembly: GCA_951802705.1
Location: OX637867.1:9178287-9179435[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 4.8e-06 0.0004 20.9 2.8 2 23 151 172 150 172 0.97

2 8 0.024 2 9.2 0.4 3 23 178 198 177 198 0.97

3 8 9.3e-06 0.00078 19.9 0.5 3 23 206 226 204 226 0.97

4 8 3.3e-07 2.8e-05 24.5 0.4 3 23 234 254 233 254 0.98

5 8 8.2 6.9e+02 1.2 4.4 1 23 263 285 263 286 0.79

6 8 0.15 12 6.7 1.4 3 23 293 312 292 312 0.94

7 8 1.6e-06 0.00013 22.3 2.2 3 23 320 340 319 340 0.97

8 8 2.1e-06 0.00017 22.0 2.3 1 23 346 368 346 368 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	4.8e-06	0.0004	20.9	2.8	2	23	151	172	150	172	0.97
2	8	0.024	2	9.2	0.4	3	23	178	198	177	198	0.97
3	8	9.3e-06	0.00078	19.9	0.5	3	23	206	226	204	226	0.97
4	8	3.3e-07	2.8e-05	24.5	0.4	3	23	234	254	233	254	0.98
5	8	8.2	6.9e+02	1.2	4.4	1	23	263	285	263	286	0.79
6	8	0.15	12	6.7	1.4	3	23	293	312	292	312	0.94
7	8	1.6e-06	0.00013	22.3	2.2	3	23	320	340	319	340	0.97
8	8	2.1e-06	0.00017	22.0	2.3	1	23	346	368	346	368	0.98

Sequence Information

Coding Sequence: ATGAGCACTTGGATGCTACGGAGAGCGAGGAAATTGCGTCGATCGTCTTTGATGAAAATTCCAACGAACGAATATCcggtcgatgaaaaaacattcgagATCGTTGATTCTATCATAAGAGCGGAAGTTGAGGCAGAAAAACGTGAATCGAGATTGTCGAAGCGACAGAGGATGCCAACAACACGATATCATTGCGAATCGAAAGAATCATTACTCCTGCACAGAACCGAGCGACTTCATCAAGTACGACAGAATAATCGTGATAATATCTTATCAGCGTATAATTGTCCTTATAGCgatgaaaaatgtgtaaaaagtACGTCGTTCTTTAAAAATCAGACAGAGCATTGCAGAAAGAGCAAAAAGGTGATAAATACTGGTCCTGATGATCAGGAACAGTTCGATTCGTATCGAACCGAAAGGAACAAACAGTCCCAGTCGGGGTCAGTCGAGTGTGATATTTGTCACAAAAgtttcaagaaaaagaaatacgttCGTGTTCACATGCGCCTTCATGGATCTCCACGAATTTGCGACGTTTGCGGTGCGATTCTGGCCTCAGAGTTTTGTCTCGAGCAGCACAAGAGACGTCACAACTCGGATTACTCGACATTTTGTGAAATTTGTCAAAAGGGCTTCTATAACAAAGCAACGTTGACAATTCATATGGCGAAGCATACGAAAGAGAAGAATGTAGCTTGCGAGATTTGCAAAAAAGCATTCGCCAATCGCGTCTATCTGAGAAGTCATATGAGAACGCATCTTGATCcgaaaacgcgaaagaaatttaaatGCGAAATGTGCAATTTCGAGACATTCTGGAGCTACTGCTACAAGGAACATCGAGAAACTCATACGGGCGAGGGTCGAGTGGCGTGCCCATTATGCGGCAAATACATACGTCGACATTACATGAAGACCCATGCGAAAATGCACGCTGGTGATAAAACGGAGATGTGCGAATTCTGCGGCAAAGGTTTCGTCTCGAGAAAATACTTAAAGAAGCATAGGCGAACTCATACGGGCGAGAAACCTTACTCGTGTTTCGTTTGCGACACAAATTTCACTCAACGCTCCAGTCTCACGAAACATCTCAAGTTGCACGAAAGCAACGAGCTCGAAGGCTCCGCGAACGTCGCGCCGAGCTGA
Protein Sequence: MSTWMLRRARKLRRSSLMKIPTNEYPVDEKTFEIVDSIIRAEVEAEKRESRLSKRQRMPTTRYHCESKESLLLHRTERLHQVRQNNRDNILSAYNCPYSDEKCVKSTSFFKNQTEHCRKSKKVINTGPDDQEQFDSYRTERNKQSQSGSVECDICHKSFKKKKYVRVHMRLHGSPRICDVCGAILASEFCLEQHKRRHNSDYSTFCEICQKGFYNKATLTIHMAKHTKEKNVACEICKKAFANRVYLRSHMRTHLDPKTRKKFKCEMCNFETFWSYCYKEHRETHTGEGRVACPLCGKYIRRHYMKTHAKMHAGDKTEMCEFCGKGFVSRKYLKKHRRTHTGEKPYSCFVCDTNFTQRSSLTKHLKLHESNELEGSANVAPS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01057134;
90% Identity: -
80% Identity: -