Basic Information

Insect: Netelia virgata
Gene Symbol: -
Assembly: GCA_951802705.1
Location: OX637867.1:3405305-3406417[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.00011 0.0088 16.6 0.1 2 23 24 46 23 46 0.96

2 8 4.6 3.9e+02 2.0 2.4 1 23 51 74 51 74 0.63

3 8 4.2e-07 3.6e-05 24.2 0.3 1 23 198 221 198 221 0.97

4 8 1.1e-05 0.00096 19.7 1.6 1 23 227 249 227 249 0.97

5 8 9.9e-07 8.3e-05 23.0 0.4 2 23 256 277 256 277 0.97

6 8 2.5e-05 0.0021 18.6 1.3 2 23 284 305 284 305 0.96

7 8 4e-05 0.0033 18.0 2.8 1 23 311 333 311 333 0.98

8 8 0.00067 0.056 14.1 6.1 1 23 339 361 339 362 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.00011	0.0088	16.6	0.1	2	23	24	46	23	46	0.96
2	8	4.6	3.9e+02	2.0	2.4	1	23	51	74	51	74	0.63
3	8	4.2e-07	3.6e-05	24.2	0.3	1	23	198	221	198	221	0.97
4	8	1.1e-05	0.00096	19.7	1.6	1	23	227	249	227	249	0.97
5	8	9.9e-07	8.3e-05	23.0	0.4	2	23	256	277	256	277	0.97
6	8	2.5e-05	0.0021	18.6	1.3	2	23	284	305	284	305	0.96
7	8	4e-05	0.0033	18.0	2.8	1	23	311	333	311	333	0.98
8	8	0.00067	0.056	14.1	6.1	1	23	339	361	339	362	0.95

Sequence Information

Coding Sequence: ATGGCCACGACGAGTGCGAATGACGAGGAAAACGAGACAATGGtttacgagaacgagacggagaGCGTCGTTTGTGAAAAGTGCGAAACGAGCTTTTACAAAATATCGGAACTCGTCGAGCACATGAGAAACGCTCACAACGATCGCGTTCATCACTGTAGTTACTGCGACTCGATTTTTCGTGCGAGCGAGGCTGCTTTTCGAGAACACGTGAAGAGCCACGAGACCAGTACGAGAAATAACAACGAATCGGACGATTCGGAGAATAATTTTGCAGGCTATCGTTACGAGATCAATATCCCGGGTAATTTGTCGAGAAGCGAGGAAATTTGCGAAGGTAGCGATCCTCTCAGACTCGAGGGAGAGTCGTCGGAGTCGCTGGAGGAATCGGCGCTGATCGAAAGAACGTCCGTCGATACGGGTCACGGTGTTGAATATCGTTGCGAATTTTGCAACTTGTTTATGCCGATATCGAGAGAGGATTTTCTTCAGCATGTACAAAGCCActtgaaaaaatgtacgaggTTGGTGGAAACTGTCGaagctcgagagagaaaaacgacgagTCAAGTTCGTATCAACCAACGCTCTTACATGTGCGAATATTGCGGCAAGACGTATACCTCGTTGATCAATCTTCGCGAACATCAACAAATCGTTCATCGCAATCTTAATCTCCATATGTGCGATCTGTGCGAGAGAAATTTCACCTCGCCATCGAAACTCGTTAATCATCGACGAATTCACAGCAAGGAACGCGCCAACGTATGCGAATATTGCGGTAAAACTTTTCGTACGGCTAACGCGATGCAAACCCATCTTCTGACTCACGACGACGATAATCGAAACGTTTGCGATATGTGCGGGAAGATATGTTCCACCAAGAGTCAATTGATCGAACACAAGAACGAGcatgaacaaaatttgactTTCGTCTGCGAAACTTGTGGCAAAAATTTTCACGCCAAACGTAATCTACTGAGGCATTTCCGCGTGCACAGCACGGATAAGACCTTCGTTTGCAAACATTGTCCCTCCAAATTTCGGCAGAAGAGATATCTGAGAGTACACACGACGATTCATCATCCGGACGAGGTGCTCGAGATCGTTTAA
Protein Sequence: MATTSANDEENETMVYENETESVVCEKCETSFYKISELVEHMRNAHNDRVHHCSYCDSIFRASEAAFREHVKSHETSTRNNNESDDSENNFAGYRYEINIPGNLSRSEEICEGSDPLRLEGESSESLEESALIERTSVDTGHGVEYRCEFCNLFMPISREDFLQHVQSHLKKCTRLVETVEARERKTTSQVRINQRSYMCEYCGKTYTSLINLREHQQIVHRNLNLHMCDLCERNFTSPSKLVNHRRIHSKERANVCEYCGKTFRTANAMQTHLLTHDDDNRNVCDMCGKICSTKSQLIEHKNEHEQNLTFVCETCGKNFHAKRNLLRHFRVHSTDKTFVCKHCPSKFRQKRYLRVHTTIHHPDEVLEIV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01057151;
90% Identity: iTF_01057151;
80% Identity: -