Nvir003895.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Netelia virgata
Gene Symbol
-
Assembly
GCA_951802705.1
Location
OX637864.1:930998-932812[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 8 2.5e-05 0.0021 18.6 2.0 1 23 73 95 73 95 0.99
2 8 8.8e-07 7.4e-05 23.2 0.9 1 23 103 125 103 125 0.99
3 8 8.2e-08 6.9e-06 26.4 1.2 1 23 131 153 131 153 0.99
4 8 9.7e-06 0.00081 19.9 2.7 1 23 159 181 159 181 0.99
5 8 9e-07 7.6e-05 23.1 1.1 1 23 187 209 187 209 0.98
6 8 0.00021 0.018 15.7 3.0 1 23 215 237 215 237 0.99
7 8 5.2e-05 0.0043 17.6 0.7 1 23 243 265 243 265 0.95
8 8 4.1e-05 0.0034 17.9 4.2 1 23 271 293 271 293 0.99

Sequence Information

Coding Sequence
ATGGTCGGTTACTATCAGTCCGAGCCGATTTCCGGCGGTAGGAATCAATCGACGCCACTACCAGTGGCGAGTCTCGACTCCATGAATCAGGTAAAGGGTTTGGTGTGCAGTCCCGATCTGACGGTATTCGCAGCACCGGGAACCGATCGCCTCGGTGGTACGGTGACGAGCAGCGGTACGAGCCACGCCACCAACGGTAACGTCGACGACAAATCCTATCAGTGTCTTCTCTGTCAGAAGAGTTTCGATCAAAAAAGCGTTTACCAGTCGCACTTACGTTCGCACGGTAAAGAGGGCGAAGATCCCTATCGTTGCAACATATGTAGTAAAACATTCGCGGTGCCGGCTCGTCTGACCCGCCATTATCGAACACACACGGGTGAGAAGCCTTATCAGTGCGAGTACTGCAACAAGTCCTTCTCGGTTAAAGAAAATCTGAGCGTGCATCGTCGTATACACACGAAGGAACGTCCGTACAAGTGCGACGTTTGCGCGAGAGCTTTCGAGCACAGCGGCAAGTTGCATCGTCATATGAGGATACACACGGGGGAACGGCCTCACAAGTGTTCCGTTTGCGCCAAGACTTTTATCCAGAGCGGTCAATTGGTCATACACATGCGTACCCATACCGGGGAAAAACCCTACGTATGCAAAGCTTGTGGCAAGGGTTTTACGTGCTCGAAACAGCTGAAAGTTCACACCCGCACCCACACTGGTGAGAAGCCTTACACCTGCGACATATGTGGAAAATCATTCGGTTACAATCATGTACTGAAGTTACATCAGGTAGCTCATTATGGCGAGAAGGTGTACAAGTGTACACTGTGCCACGAGACATTCAACTCTAAGAAAACTATGGAGCTACACATCAAGACTCACTCGGATCCAGGCTCGGGTTCGCCGAGAGACTCGCCTATCGAGCCGGTCATCGAGATATCACagcttcatcatcatcatcaccatcacaATCATCATCATCTGGCTCAGCATCAGACGGAACTGGTCGGTACTACCGCGAGTCTGGCACAGAGTCCTCATCACAGCTCCGGCAACAGTAACAGCAGCATAAGCAGCTTGAGCAGTGGTCATAGCAGCGACAAGGAGAACAAGACTGAAGACTCGTGCTCGATTCAAGCCCAGGCTTACAATCAGCCAAGGGATTTCTCCTACTATCTTTATCCCCGTGAACACCAGCAATGCGGCCAGCTGCAACAGACGCAACAGCATCACGAACAAGAGATTCAAAATCATCAGAGCCAGTCGCCCGGTGTGAATCCTGCCTTGTTGGCCGCCGCGGCGGCTGCGGTCGCTGCCGAAGACAGAAACTTCCAGCGACACTCGCCAGTACCGAATCATCACGACGCCACGTGCATAGACGCCGATTCGTCCTCGCACGTATTTCTTTATCCCGACGTTATATCGCCCGCTTATTCGAACTACTCGATGCAATCGAGCGACGCGATCAACGTCGACGATTGTTCGTCGTTGCTCAATCTTCCGGGCAATGACGCGCGAAGAAGGGTCGAGGCGGCTCTCGAAGCGGTCGAGGAAGACCGACAGAGGGAATACGGCTCGGTGACACGCGTCGTATCCTGCCATCAAGAGAGACAGCAGATGCTAACGCCACCTAGCAGCAATCCCGTGAGTCCCGCACCGTCGCCCGACCCACTCGATCTCGCTGTACCGACGAGAGAGACCCTCATTCTACCGCCCCGTAAGCGTTGCAAGATGATCCTCGAGTCGATGGAGAGCGAAAGAACGGAACTCGCCTCGCAGAGACACAGTTCCGTCATACAATTCGCGCGTGCGTCTTAG
Protein Sequence
MVGYYQSEPISGGRNQSTPLPVASLDSMNQVKGLVCSPDLTVFAAPGTDRLGGTVTSSGTSHATNGNVDDKSYQCLLCQKSFDQKSVYQSHLRSHGKEGEDPYRCNICSKTFAVPARLTRHYRTHTGEKPYQCEYCNKSFSVKENLSVHRRIHTKERPYKCDVCARAFEHSGKLHRHMRIHTGERPHKCSVCAKTFIQSGQLVIHMRTHTGEKPYVCKACGKGFTCSKQLKVHTRTHTGEKPYTCDICGKSFGYNHVLKLHQVAHYGEKVYKCTLCHETFNSKKTMELHIKTHSDPGSGSPRDSPIEPVIEISQLHHHHHHHNHHHLAQHQTELVGTTASLAQSPHHSSGNSNSSISSLSSGHSSDKENKTEDSCSIQAQAYNQPRDFSYYLYPREHQQCGQLQQTQQHHEQEIQNHQSQSPGVNPALLAAAAAAVAAEDRNFQRHSPVPNHHDATCIDADSSSHVFLYPDVISPAYSNYSMQSSDAINVDDCSSLLNLPGNDARRRVEAALEAVEEDRQREYGSVTRVVSCHQERQQMLTPPSSNPVSPAPSPDPLDLAVPTRETLILPPRKRCKMILESMESERTELASQRHSSVIQFARAS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00629332;
90% Identity
iTF_01057138; iTF_01056303;
80% Identity
-