Basic Information

Insect: Netelia virgata
Gene Symbol: ZIPIC
Assembly: GCA_951802705.1
Location: OX637863.1:44301988-44303976[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 5.8 4.9e+02 1.7 0.2 1 19 210 228 210 228 0.82

2 10 0.00027 0.022 15.4 0.1 1 23 329 351 329 351 0.96

3 10 0.00065 0.054 14.1 1.4 1 23 357 379 357 379 0.91

4 10 4.5e-06 0.00038 20.9 0.4 1 23 384 406 384 406 0.99

5 10 4.9e-05 0.0042 17.7 0.1 3 23 414 434 412 434 0.97

6 10 2.5e-06 0.00021 21.7 1.4 1 23 440 462 440 462 0.98

7 10 4.9e-05 0.0041 17.7 0.0 1 23 469 491 469 491 0.95

8 10 0.00028 0.024 15.3 3.7 2 23 498 520 498 520 0.97

9 10 0.00011 0.0092 16.6 2.6 1 23 526 548 526 548 0.98

10 10 2.3e-05 0.0019 18.7 4.6 1 23 554 577 554 577 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	5.8	4.9e+02	1.7	0.2	1	19	210	228	210	228	0.82
2	10	0.00027	0.022	15.4	0.1	1	23	329	351	329	351	0.96
3	10	0.00065	0.054	14.1	1.4	1	23	357	379	357	379	0.91
4	10	4.5e-06	0.00038	20.9	0.4	1	23	384	406	384	406	0.99
5	10	4.9e-05	0.0042	17.7	0.1	3	23	414	434	412	434	0.97
6	10	2.5e-06	0.00021	21.7	1.4	1	23	440	462	440	462	0.98
7	10	4.9e-05	0.0041	17.7	0.0	1	23	469	491	469	491	0.95
8	10	0.00028	0.024	15.3	3.7	2	23	498	520	498	520	0.97
9	10	0.00011	0.0092	16.6	2.6	1	23	526	548	526	548	0.98
10	10	2.3e-05	0.0019	18.7	4.6	1	23	554	577	554	577	0.95

Sequence Information

Coding Sequence: ATGAATCGAAGCGACGATGATAAATGTCGCTTGTGCTTATCCGAACACGATAAAAGCGATCTGACACCGATCTTTGGCGAAGCTCCCGGATTGTCATTAGCCGCACGAATGATGATCTGTTTGTCACTTCCGGTGCAGCCGGGAGATTCGTTTCCGGACACCGTGTGCAAAACTTGCGAACATCACGTAACGCAGTTCTACACGTTTAAACAAACTTGTTTGAATGCTTATTATTCACTGCTGGATCGCGCAAATGTTTATAATGTCGATGATAAATTCTGCAACTTTGCTAATCGCCAAGATGCAAATTCAGCAAACTTTGCGCTTAGTGTTGACAATTTTGACGACAACACTGATAGAGCGTGCATTAAATTGGGACGCGAGAaactcgatatatcgaaaacaaaaccTGAAAAGAAATTCTTCGTGGGATACGACTCTCGACATAACGATGAGAGAACATCAGTGCCACATCTACAAAACGATCCCCTTGCCGATGAAATTGTACCCATTAATGTAGAGTGCAATATGGAATCAGCAAATTTCGTATGCAGTTTCATGGaccgaacgaatgaaaaacttCACAAAGAGttaaatttcgtcgatacCGCTACAGAAATCATTAGATACAAATGTTTACGCtgcgataatttattttctgatCTCAATTCAGCATCGGCCCACTGCGCGCAATGTTGTCGAACCGACGACGAGTACGAAAACGATGTCGACCACCGGAACGAGATTGTCGAAAGAACCGAAGGGGAAGAATATCTGGATGAAAATTTAAcccaaaaaaacgtaaatgcGGAAGAACCGAGACCACCATCTTGGCCAAGCCCAATGAGAAAACATTCCAGCCCACGATTTCATCCTGATCGAAAAACGAGTCCAGCGACTGAGGTTCAAAGAAATTCGAAAGTATTGCGACTGAAATCCCCGTCGATCTTACGTAAACGAGAGATTCGCGAGATCAAAACAAATCACTCGTGTCCCGCCTGCGAAAGCGTATTTACGAGCGCTGCGCTATTGAGACGACACATGGTGGTTCATACCGGAGAACGTCCATACGAGTGTCCTATATGTAAAAAGCGTTTTTCTCAAGTAGGACAgttgaattttcataaaaatttccaCGAAAATCCGCGTTATCGTTGCGAAATATGCACGAAACCATTTTTACGACCGAGCGACATCGAGAAACACATGAGAACGCATACGGGTGAAAAACCATACGGATGCAGTATTTGCTCAAAGTCGTTCGCTCAATTGGTGGCTTTGCAACAGCACGAAAGGATACACACGGGCGACAAACCATTTGTTTGCGAAATATGCAACAAAAGATTTTCCCAAAAAGCtaataaaacgaaacacgTAAAGATCCACAAGGAGGGAGCGAAACCATACACTTGCGGGATATGCGGTAGAAGTTTCTCCGACCTCGGAGAGATGATGCTACATCGCGCGGGTCATGGCGGTGGAAAACCAAGAAAATGCgatcattgcgaggagagctTTAGGAAAATGTCCGAATTGTCTCAGCACACGAGACGTTATCACACGTTTGAGAAACCTCATAAATGCGCCTTTTGCCAGAAGGGTTTCTATTCCCTTTACAATTTAAAACAGCACGTGATGGTACATACCGGACAAAAACCTTACTCTTGCTCTCACTGCGATCTCAAATTTACCCAAAAGGGCAATTTGACAAAACACTTCGAGCGCAAACACGCTGAACACGTGTCGCATGATGAAGGATACATCGTTGGCATAAAAGAAGAGACACCGTTGATAATCGAGCGCGAGGAAACCGTCGAGCTTGAAACTATCGACGACAGTATCGATCACAATGATCTACAAACGTATAATATCGACTAG
Protein Sequence: MNRSDDDKCRLCLSEHDKSDLTPIFGEAPGLSLAARMMICLSLPVQPGDSFPDTVCKTCEHHVTQFYTFKQTCLNAYYSLLDRANVYNVDDKFCNFANRQDANSANFALSVDNFDDNTDRACIKLGREKLDISKTKPEKKFFVGYDSRHNDERTSVPHLQNDPLADEIVPINVECNMESANFVCSFMDRTNEKLHKELNFVDTATEIIRYKCLRCDNLFSDLNSASAHCAQCCRTDDEYENDVDHRNEIVERTEGEEYLDENLTQKNVNAEEPRPPSWPSPMRKHSSPRFHPDRKTSPATEVQRNSKVLRLKSPSILRKREIREIKTNHSCPACESVFTSAALLRRHMVVHTGERPYECPICKKRFSQVGQLNFHKNFHENPRYRCEICTKPFLRPSDIEKHMRTHTGEKPYGCSICSKSFAQLVALQQHERIHTGDKPFVCEICNKRFSQKANKTKHVKIHKEGAKPYTCGICGRSFSDLGEMMLHRAGHGGGKPRKCDHCEESFRKMSELSQHTRRYHTFEKPHKCAFCQKGFYSLYNLKQHVMVHTGQKPYSCSHCDLKFTQKGNLTKHFERKHAEHVSHDEGYIVGIKEETPLIIEREETVELETIDDSIDHNDLQTYNID

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01056284; iTF_01057111;
90% Identity: iTF_01056284; iTF_01057111;
80% Identity: -