Nvir014772.1
Basic Information
- Insect
- Netelia virgata
- Gene Symbol
- -
- Assembly
- GCA_951802705.1
- Location
- OX637867.1:9179928-9182243[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 4.8e-06 0.00041 20.8 1.0 1 23 28 51 28 51 0.98 2 13 2.2 1.9e+02 3.0 0.1 2 16 58 72 57 74 0.76 3 13 0.18 15 6.4 0.4 2 23 86 106 85 106 0.90 4 13 0.005 0.42 11.4 1.6 1 23 203 225 203 225 0.95 5 13 1.8e-06 0.00015 22.2 0.4 2 23 232 254 232 254 0.96 6 13 5.8e-05 0.0049 17.4 4.5 1 23 260 282 260 282 0.97 7 13 0.037 3.1 8.6 0.4 1 23 286 308 286 308 0.97 8 13 3.9e-05 0.0033 18.0 1.7 3 23 316 336 314 336 0.96 9 13 8.1e-05 0.0068 17.0 0.2 1 23 342 364 342 364 0.98 10 13 0.23 19 6.1 1.8 1 23 370 392 370 392 0.96 11 13 2.7e-07 2.2e-05 24.8 0.2 2 23 399 420 398 420 0.97 12 13 4.4e-07 3.7e-05 24.1 0.6 1 23 426 448 426 448 0.98 13 13 1.9e-08 1.6e-06 28.4 1.2 1 23 454 476 454 476 0.99
Sequence Information
- Coding Sequence
- ATGCGATTTGTGCATTCTTTCATTTCCAACGGATTGTGCACGTTTGTGCCTGCTCTTATCACCGAGGATGGTACGACGTTCTACGAGTGTGATCTGTGCGACGAGAAATTCGAAAGGAAAATGTATTTATCCAGGCATCGACGAATGGTACACAAGAGTATGTCAGGTATTCATTGCCACGATTGTCAAAGATCTTTGCTCACTAACGACGAGCTGAAACAATACATGATTCTCGCACATCCCGTCGAACTGAGCCAGTGCAAAGTTTGTAAAAAGATTATCAGGACACCGTATCTCAGGATGCATATGGCCCTTCATGAAAGACTTCACGTGTGTCACATATGTGGTACGAAACATTGCTCAGAGTGCATACCGGATGACGAAAACTCGAAAGTGGAATCGGTCGAGCTAGTCGAGGAGTACGTTGGACAAGACGAGACATTTACCGAGGACTTTCAGCCTTTCGAGGAACACGAAGTTGTCGCGGAGAAAGCTCGGTACTCGGCTATCGACGACGAAGAGCTTGTGGTCGAGGGAGCCTTGGACGAAACGTCGAAACGTCCTTCTTACGACGATGTTGGGACAACGAGAAGATCGCAAAAGCACTATCTGTGCGATATCTGCGGCAAGAGTATGAGAAAGAAGTTGCAATATCTGCGGCATCGTCAGAATCACGAGAGGAAAACTGGCGGACGTTGCGACGAGTGCGATCGTGTCTTCAACGACGAGGACAAACTTCGCAAACACATGATCAAAGCCCATCAGGAGGATAAACCGTTTTCCTGCATGCTGTGTGGAAAGTGTTTCAAGACCGAGGAATTCCTGAAGACTCATCTCAAGcaacataacaaaaaatttacatGCGACATATGCGGCGTTTCAAAAGTGTCCGGTTACGATCTTAGACTtcataaaaagaaacacaatCGTGAATACGTAACGCACTGCGAGATATGCAATAAGGGATTTTACACTAATCAGACACTCGAGCGTCATGCGCTAACGCACACCGGTGAAAAACCATTCGTATGCAAAATCTGCAGAACTCCATACGCGAGCGCTGCTTATCTCAGTATGCACATGAAGTCTCACGGTCAGCGGGAGAAGCATCAAtgtaatatttgtaatttcgaGAGTCACTGGAAAGCCGCCCTCAAGGTACATCTCAAGATACACACCGGTGAGAATCAGATAACTTGTGAAATTTGCGGGAAATCCGTATCCAGCAAAACGTATCTTCAGATCCACATGAGAATACACTCTGGCGAGAAGCCTCACGTTTGCGAAGTTTGTGGCAAGGCTTTCAGCGTTAGAAAATATCTCATCGTTCATCTCAGAACTCATACTGGCGAGAGACCGTACGAATGCAAGATTTGTCAAAAGAGATTTACCCAGCAGGGTTCTCTCAATGCGCATATGAAGTCGCACAAAGAGGCGAAATAA
- Protein Sequence
- MRFVHSFISNGLCTFVPALITEDGTTFYECDLCDEKFERKMYLSRHRRMVHKSMSGIHCHDCQRSLLTNDELKQYMILAHPVELSQCKVCKKIIRTPYLRMHMALHERLHVCHICGTKHCSECIPDDENSKVESVELVEEYVGQDETFTEDFQPFEEHEVVAEKARYSAIDDEELVVEGALDETSKRPSYDDVGTTRRSQKHYLCDICGKSMRKKLQYLRHRQNHERKTGGRCDECDRVFNDEDKLRKHMIKAHQEDKPFSCMLCGKCFKTEEFLKTHLKQHNKKFTCDICGVSKVSGYDLRLHKKKHNREYVTHCEICNKGFYTNQTLERHALTHTGEKPFVCKICRTPYASAAYLSMHMKSHGQREKHQCNICNFESHWKAALKVHLKIHTGENQITCEICGKSVSSKTYLQIHMRIHSGEKPHVCEVCGKAFSVRKYLIVHLRTHTGERPYECKICQKRFTQQGSLNAHMKSHKEAK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -