Nvir007781.1
Basic Information
- Insect
- Netelia virgata
- Gene Symbol
- lola
- Assembly
- GCA_951802705.1
- Location
- OX637865.1:591807-595401[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.6e-08 1.3e-05 24.9 0.1 9 40 407 439 406 444 0.87
Sequence Information
- Coding Sequence
- ATGGAGGACGACCAGCAGTTCTGCCTAAGGTGGAACAATCATCAGAGCACGCTCATCCAAAACTTCGACACACTCCTAGAGAGCGGCACGTTGGTCGACTGCACTCTGGCAGCGGAGGGGAAGTACCTAAAGGCCCACAAAGTGGTCCTCTCCGCGTGCAGTCCGTACTTTGAGGGCCTCCTCAGCGAACACTATGACAAGCACCCCGTCTTTATATTAAAGGACGTTAAGTTTAAAGAACTGAAAGCCATGATGGACTACATGTACAGGGGAGAAGTAAATATCTCCCAAGACCAATTGGCAGCACTCCTAAAAGCCGCCGAGTCGTTGCAAATCAAAGGGCTCTCGGAGAGTAAAACCGGCGGTAGTACCGGCAGCAAAACAgactcctcgtcgtcgaggcAACAACAGAAAGTCGTGACACAGCCTACGGCACCGTCGTTGGACATTCCACACGCGTCTTCCGGTCTCACAATAGAAAAGAACAATAAAGTTCCTAGACAGAGTATGGCACAGAGTTCCGTGGGTGACTTGCCCGAAGACTCGGCCAGTCCTCAGCTACCTAAAGGACTCTCCTCCAgGGAAGGCTCGCAAAGTCCAaccgcgagaaaaagaaagaggttCAGAAGAAGAAGCGTTGGCGATGACAATTCAATTGAAAATCACGATGCATCAAACTCGAGTGACATGCCACAACAAATGAGCGTACCTTCGCTGggtgttgctgctgctgttgacGAAAAGACTCACGGTGACCCGATAGATCCTCTCGGCAGGTCGGCACTAATGCAACAGCTGACCAAACCCACCGACGACATGTTACAAtTGCCACTCGAGAAACCTGAACCTACCGAAAGCTTGATCGAGCCAAAGTCCGAGTACCTGGAGGATAACGAAGAAAGTGTCGAAGACCTGACGCTCGACGATGACATGAATGACCTCAACGAAATGGAACAAGACAACAACAGAGCTGGCCCGTCCCACGATCCCTCCCAACATCCTGGTGGGGGGGCGGGCTCGCGGTCTCGCGGTACGAGAGGCGTTAGTACGTTTGTTGGCGGCGATGGCGATGCACGCTGGGCATCGCATTTCCTCGATTATCATAAAAAAGGCTCGAACATGAGGCGTCCACGTCCGGACGTTGACGTAGGCGCGTTACTCAAATCGCTCGCCAACAAGCAGGGAAGAAAATATAGCTTAGACTCGGTTAGAATGTCGCTGGAGGCGATATTGCAACAGGGCGTTAGCACGACACACGCATCCGAGATGTACGGCATTAATCGTTCGACGCTtcagttttatttaaaaaaattgaacgtcGTCCGACGAAGATGGAGACAACCGGCGACTCTCGTGCCTCATAGACAGTCTTGA
- Protein Sequence
- MEDDQQFCLRWNNHQSTLIQNFDTLLESGTLVDCTLAAEGKYLKAHKVVLSACSPYFEGLLSEHYDKHPVFILKDVKFKELKAMMDYMYRGEVNISQDQLAALLKAAESLQIKGLSESKTGGSTGSKTDSSSSRQQQKVVTQPTAPSLDIPHASSGLTIEKNNKVPRQSMAQSSVGDLPEDSASPQLPKGLSSREGSQSPTARKRKRFRRRSVGDDNSIENHDASNSSDMPQQMSVPSLGVAAAVDEKTHGDPIDPLGRSALMQQLTKPTDDMLQLPLEKPEPTESLIEPKSEYLEDNEESVEDLTLDDDMNDLNEMEQDNNRAGPSHDPSQHPGGGAGSRSRGTRGVSTFVGGDGDARWASHFLDYHKKGSNMRRPRPDVDVGALLKSLANKQGRKYSLDSVRMSLEAILQQGVSTTHASEMYGINRSTLQFYLKKLNVVRRRWRQPATLVPHRQS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00266562;
- 90% Identity
- iTF_01056161;
- 80% Identity
- iTF_01057757;