Nvir007815.1
Basic Information
- Insect
- Netelia virgata
- Gene Symbol
- -
- Assembly
- GCA_951802705.1
- Location
- OX637865.1:658292-668706[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.1e-12 3.5e-09 36.4 0.0 1 38 39 75 39 79 0.95 2 2 5.8 4.9e+03 -2.5 0.2 32 44 482 495 479 496 0.80
Sequence Information
- Coding Sequence
- atgaccaAATGGCGCACGCTGTCAGACATTCTCATTATACCGTTCAATTTGTATAACGAGTGCAATATAATCGTGTGGCCCGGCCAGCGAATGAGACGCGGAAGTTTCGCCGATGATCCAGATCTGATGAGACAAGCGATACACGCCGTGCAGAATGGATTGTCATTGAGAAAAGCCGCCGCACTCTTCTCCGTGACGAAATCGAGTTTGCATCGTTACGTGCGAATGGATGCGAGAATGATGGGATACTTGACCTCCCAAAGGGTGACTTACCCTTGCAAGAATTGCGGCAAGATATACAACTACTATTCGAGCTTGGCGAGGCACCTGAAGCACGAGTGCGGTGTGGAGCCGAAATTTCATTGTCCACTGTGTCCTTACAGAACGAAACACAAGTCGAGTCTGAATACGCATCTCAATGGTAGACACATGAAGATGTTGAACGACTATTACGCGACACCAAACAATTTCCATTTGCCGGAGATGTATGGAAGGGGCCCGATCATGTGTCCAAGAAGATTGCGAGGACAGGGACGCATGGTTTGCGAGATCTGCGGCAGGCGTTATCATCAGGCGAAAAATCTGCGGAGACACATTATGAACGAGTGTGGCAAGGAGCCGAGTCTTCAGTGCTCCTACTGTCCTTACAAAGCAACCTATAAGTCGTATCTGGAGATTCACATGATGAAGCACACGAGACATCAACGAACCGGTGGTGGAATGTGCTTGAATCCGCGACTGCGCTCGACTACTCACGCTGGGGATGGTACCGAAGCTTCCAATCCTGGATTTCGTCGCATAGGAACGAAGAAATATCTGTGTCTCGATTGTTGCAGCACTTTTGCTCTGAAAGCCTCGCTAATGCGTCATCAGTATCTCGAATGCACCAAAACACCACCGCCGAAGAAACGTCGCAGCGAGCCCGGAAGATCGGTCTCGGAAACGAAgaaatcgtcgaagaaacaCGATTGCTCGAACTGCGATCGTTCGTACGCTTTTTACACGTCGCTGTGGCGTCATCAGCACTACGAGTGCGGAATGGAGCCAAAATTTGATTGCACGATTTGTCAGATAAAATTTGCCCAGAAGAGCAATCTCGATCGTCACATGCaatccTCGAGACTTCAGCAAAGAAAGTATCAGCGAAGATCTAGACCGCTGAACGATTCGACCGGTGATTCTTCCTTCAAATGCCCAAATTGCGGCAGATGTTACAAGATGAAGAGAACACTAGCGCGTCACATGAATTTCGAGTGCGGCGGGCAGCGAAACTACGCCTGTCACGTTTGTCCTTCAAAGTACACGCAGAATATAACACTCAGGCGGCACTTGTTacaacgtcacaatatatacgtTCCACCGATGTTCTCCGTTCCAAAAAGAATATTCGCACCCAaCGCCGATCAAAAATGGTCGGGATTTCCAATGGTAGATCCATCCTTGActctcgttcgtcgacgaaaatCTAGACGAGACACGCATGGAAGAGACGGTGTTCCGCTGATGACTTGCGATTGCGGCAATACGTATCTTACTCAAGCAGGACTCTACAATCATAAGCGTTATTCTTGTGAATCGGCTGGAAGTTTTCGTCTCTATCCCGAAGGttcgattaatgaaaatatggaAAGATGGGACTCGATATCCTCGACTTGGACACCGGAAACCGACAAACCGTTTATGTGCACGAGTTGCGGCAAGGGTTACACTCACATATTCACTCTtaatcgtcatcgtcgtaCGGCCTGCGGGAAATTGAGAAATACCGGTGGAAGTTGGAGATGCTCGCGTTGCTCGAGGACATACGTGAACGAGGGGAATCTTGCCAGGCACATGAAATTCGAGTTTTTAGGATGGTCGGTCGATCCACGCTATTCGTACGACGTGGGAAACGGTTTGTATCCGGAGATCCGTGGTCGAGGCGGACGCCAGAGATCGTTCGCTTGTTCGGTATGTGGCAAGGCATACACGGTCTGGCGATCCCTATGGAGGCACGAAAAGTTCGAGTGTGTCAACGCCAGACCGGCTATTTCTTGCGATCTTTGCCCTTACAAGAGTCCGCACAAGTGGTGCGTTCAGAATCACAAGAAGAAACATCACGAATCTGGGCTCGACCGGGATCAGTACGAACCGATTCCTcgcgttaaagaaaaaatgggaatATCTACGAAGGCATACGATAGAGAAGAGATCGAGGATGATAGAGAGGAGACTGAAGCGGAGAATGAAGATAAGATACAGGAGCATGAAGACGGGAATGAGGAAGAGCCGATGCCAATGGAATATATCGAAGATTATGAAGAATTAGGTGAATTAGATTCGACGGAAAATCGGATGAAGATCGTTGATGTGCCGTCTACCTCGCGACTCCAAGAAACCAACCAATTCTTCGACGTGCTTGAAGACGGAGAATTCATCGTGaaggagaacgaaaaagattGCCAGTGCGAGGATTGTGGACGCGTTTACGGTTGGGCAACTTCGCTGGCGAAACATCGCAGGCATTGTCCGGAGCGACGTGACTGGATGGAAAATTCTACCTCGCCCACTTTTCTCACCGACAATGAAATTGACTCGTTGGACGAagaggaaaaggaagaaactGCGGATGATTCCACGTGCTCCAAGGAAAAAGACGATTATGATAAATTGCGGAGTTTTAAACCACGATTTCGAGAACTTCACAAGTACGAGACGAGCGACGGTGTGTATTCTTGCTGGGACTGTGGAAAAACTTACACATGGGCATCCTCGTTGTCGCGTCATCGTACCGTCGAGTGTGGGCCAAAGAACAAGAAGAGGTTCGTCTGTACTTTGTGCAACTACAGAACCGGCTACAAGTGCAATTTCATGAGGCACCTCAAAGCACCTCGTCATCTTTCCAATACGATAATTCAGAAGCAGCGCGGATTGGAAGGCACTTGCGACGcaagaaacgaggaagaaacggAAGGCGAAGAATTTTTGAAATTGCGCGATCTTGGACCTAACGGGGAATTTCTGTTTCTAGGATATCGCAAGCTTTACATGGGCGAACAAATGCTCGGCTACACTTGCACAAAGTGCAGCAAGTTCTACAAGATGTGGAGCAACTATCTGAAGCACAAGTGCGAGCCACCGCAGTTCAAGTGCTCGATGTGCCCATTCGCAGCGTTTAAGGCGTTCATACTTCATGCTCATCAGGCAGAACAACACTTCAATATATCATCGACGAATTCTTGA
- Protein Sequence
- MTKWRTLSDILIIPFNLYNECNIIVWPGQRMRRGSFADDPDLMRQAIHAVQNGLSLRKAAALFSVTKSSLHRYVRMDARMMGYLTSQRVTYPCKNCGKIYNYYSSLARHLKHECGVEPKFHCPLCPYRTKHKSSLNTHLNGRHMKMLNDYYATPNNFHLPEMYGRGPIMCPRRLRGQGRMVCEICGRRYHQAKNLRRHIMNECGKEPSLQCSYCPYKATYKSYLEIHMMKHTRHQRTGGGMCLNPRLRSTTHAGDGTEASNPGFRRIGTKKYLCLDCCSTFALKASLMRHQYLECTKTPPPKKRRSEPGRSVSETKKSSKKHDCSNCDRSYAFYTSLWRHQHYECGMEPKFDCTICQIKFAQKSNLDRHMQSSRLQQRKYQRRSRPLNDSTGDSSFKCPNCGRCYKMKRTLARHMNFECGGQRNYACHVCPSKYTQNITLRRHLLQRHNIYVPPMFSVPKRIFAPNADQKWSGFPMVDPSLTLVRRRKSRRDTHGRDGVPLMTCDCGNTYLTQAGLYNHKRYSCESAGSFRLYPEGSINENMERWDSISSTWTPETDKPFMCTSCGKGYTHIFTLNRHRRTACGKLRNTGGSWRCSRCSRTYVNEGNLARHMKFEFLGWSVDPRYSYDVGNGLYPEIRGRGGRQRSFACSVCGKAYTVWRSLWRHEKFECVNARPAISCDLCPYKSPHKWCVQNHKKKHHESGLDRDQYEPIPRVKEKMGISTKAYDREEIEDDREETEAENEDKIQEHEDGNEEEPMPMEYIEDYEELGELDSTENRMKIVDVPSTSRLQETNQFFDVLEDGEFIVKENEKDCQCEDCGRVYGWATSLAKHRRHCPERRDWMENSTSPTFLTDNEIDSLDEEEKEETADDSTCSKEKDDYDKLRSFKPRFRELHKYETSDGVYSCWDCGKTYTWASSLSRHRTVECGPKNKKRFVCTLCNYRTGYKCNFMRHLKAPRHLSNTIIQKQRGLEGTCDARNEEETEGEEFLKLRDLGPNGEFLFLGYRKLYMGEQMLGYTCTKCSKFYKMWSNYLKHKCEPPQFKCSMCPFAAFKAFILHAHQAEQHFNISSTNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01057847;
- 90% Identity
- iTF_01057847;
- 80% Identity
- iTF_01057847;