Basic Information

Insect: Netelia thomsonii
Gene Symbol: -
Assembly: GCA_964017225.1
Location: OZ024924.1:26706775-26711509[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.098 7.4 7.4 0.5 3 21 261 279 261 280 0.87

2 12 0.0097 0.74 10.5 0.3 1 23 286 309 286 309 0.96

3 12 0.00042 0.031 14.8 3.4 2 23 322 344 321 344 0.96

4 12 0.059 4.5 8.0 0.4 3 23 357 377 357 377 0.97

5 12 1e-07 7.6e-06 26.2 1.5 2 23 416 437 415 437 0.97

6 12 0.0073 0.55 10.9 0.4 1 23 442 465 442 465 0.91

7 12 0.23 17 6.2 1.2 2 23 539 560 539 560 0.97

8 12 0.0018 0.14 12.8 1.8 1 23 569 591 569 591 0.95

9 12 7.7e-06 0.00058 20.3 1.4 1 19 598 616 598 620 0.95

10 12 0.1 7.6 7.3 5.0 1 22 626 647 626 647 0.95

11 12 0.18 14 6.5 0.0 1 23 757 780 757 780 0.97

12 12 7.2e-07 5.5e-05 23.5 5.9 1 23 785 808 785 808 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.098	7.4	7.4	0.5	3	21	261	279	261	280	0.87
2	12	0.0097	0.74	10.5	0.3	1	23	286	309	286	309	0.96
3	12	0.00042	0.031	14.8	3.4	2	23	322	344	321	344	0.96
4	12	0.059	4.5	8.0	0.4	3	23	357	377	357	377	0.97
5	12	1e-07	7.6e-06	26.2	1.5	2	23	416	437	415	437	0.97
6	12	0.0073	0.55	10.9	0.4	1	23	442	465	442	465	0.91
7	12	0.23	17	6.2	1.2	2	23	539	560	539	560	0.97
8	12	0.0018	0.14	12.8	1.8	1	23	569	591	569	591	0.95
9	12	7.7e-06	0.00058	20.3	1.4	1	19	598	616	598	620	0.95
10	12	0.1	7.6	7.3	5.0	1	22	626	647	626	647	0.95
11	12	0.18	14	6.5	0.0	1	23	757	780	757	780	0.97
12	12	7.2e-07	5.5e-05	23.5	5.9	1	23	785	808	785	808	0.98

Sequence Information

Coding Sequence: atggctgTGTCAGAATGGGACAATTCCTGCAGACTCTGCGCTCAAGAACAATCTGAAATGTTTTCGATTTTCGATGAGGAGGGTTTGCGGCGTAAAGTCGCTCACAAACTACGTGTCTGCTTGCCCGTTATGGTGTACAAAACTGATCCACTGCCAAAAAAAATATGTCAATTTTGCGCCGCGAGACTGGACGATGCTTACGAGTTCAGGGAATATTGTCTCACTGTCTACAAGAGCATGCATCTTAAGCTCCTGACCCTTCAAGATTTCAAAGCCGTACAGATTTATATGGATGCTATGAACAATTCACCCGATCCTTGTCAAGTACAACTATGTAAGGAGAAAGCGCGTGCTCCACCGCCTTTGGTACCATTGCCGGCGTCATTGCCACTGACAAAACGAGTAGCGGTCGATAAACCCAAACTTTTGCTACCCGTTATCGGCCCGGATCCATTGCCGGAATTGCCATGCGAGGTTGAGATTAAAGAAGATCCGGGCGAATCTGTGCTTAGAACAGATGCGACGCTCGCACAAACGCGATCGGAAAGTCGCGAGTCATCGACGCAAGGATCTTGCGAGATTAAGACCGAAGAGGGCAATGATAACGACGTGATACTCCTCGGCGATAATTTGATAGAAGAGAGAACGTCGGATAACGAGAACGAGTATAGAAAAGAAGAGAAGCATACGAGTATATTAGAGCAAGTATTGACTGGAAATTTGACGATCAACGACTGCAAGGAATTAACTCCAAAAGCAAAGCTCAGTTCGCAATGGTGGTGTTCGCCTTGCAACAGTTATTATCGAACGAAAAGTAGTTTGATGAAACATATGCAACTGTTTTGTCCACGAACTTATACTTGTTCCAAGTGTTCAATGATATTCCAATCGGTTCAGGAGCTCGCCAAACACGAAGCGACGAATCACTTAAAAGTCACTTTCGACTTTGACGAAACTCTCAAAGAGTGCCATCGGTGCGATCGGGAGTTCGTCAGTTGGGAAATGTTGCGACATCATCGACTTCGAGATCATATTGCCGAATCAATCGAAAATGGCACAAACACGTGGTGTCCGCTTTGCAACAGGTTTTTCCCAACAGTGGAATTATACTACAGTCATAAACAACTTCACGATGCCGGAACGCTGATTGCCGAAGAAGCTATGGAAACTGAATCGTCTTCTCAGGCTCAAGAGGAGGTCAATGAAATGAAGAGGGAACATTTTATCGACAGCATCAAATCTCTGACTTGCCCGACTTGCGGAAAGGTGTGCACGCAACAAAGTGCCTTATCGAATCACATGCGTACCCACGAGCCTAAAAAGCACAAATGTGAAATTTGCGGCCGATCATTCGGTCTCTTTATACGCCTCGCCGCGCACAGACTTAGTGAACATGGTCAACAGCCGATTATGTCCCCTATCACGGCAAGTGTCGAGCAAGAAGAAGCCTTGAATGCCGCGAGAGAAGCAAGAGAGGCTCGCGTGGCCAAAACGCAGAAAAGTCGAATCAGAACTTTCTCAGAGACTGTAGATGATGATCGAGTCTCGGTGGAAGAGCCAATTACCGCGAAAAACAGTGCTCATGCAAATGCAAATTCCGCCAAGAATGTCGCGCGATGCGGAATTTGCCAGCAATGGTTCGCCGATCACACGACTATGTTGAATCATCTTCAAACCCATTCCGACAACTTAACGTCCAAGAGCTTTAGCTGCCGAGTTTGTAAAAAAACATTCAAAGAAAAGTGGCAAATGAGCAGGCACGAGGTATCGCACAAACGAAGCAAGGGGGGTTACACATGCAAAACATGCAACAAATCTTTCAAGGACAAAAACCAGCTCAAAGCACACGAACCAATTCACACTGTGAACAAAACTTATCACTGTGTAAAATGCAACAAgatattttttaaagaattttcgcTAATGACCCATCAGTGCACCGGTATCCCTGTGTTCTGTAAAGTAAATGTGAATTCTGGAAAGCGCAAAACACCGTCGGCTTCGAGCGGTAAGACCAAGAGACAAGAAACTTCTAAAGACCAAGGAGCTGCGAATAATTCAAAGTCGAGGAGCAGCCGCTCGCGATTGACTGATGAATCGATACACGACAACACTGTGGTGGAATTGGATAACGACGAGATGCCAAAACTAAGTCCTGAAACTTCGTCAAATGTTTTGATACCGATTCTAGAGCCAAAAGTCGAAATTAAGGAACACGGAAGCCTCTCGATCCCTATTAAGAGGACACTGATCAGGACGGCGAGCGGATATCGCTGCGGTGTTTGTCAATCACCGTTTGTACTTCGCGAATTAGCTGTTGCCCATCTACGATCGGCACACCCCATGATGCCTTATCAATGTCCCTACTGTAAAAAACGCTTTACAACGCAGTACACCTTCACTCATCATATAAAAACCGATCATCCTGACGAAACGGAGAAATGA
Protein Sequence: MAVSEWDNSCRLCAQEQSEMFSIFDEEGLRRKVAHKLRVCLPVMVYKTDPLPKKICQFCAARLDDAYEFREYCLTVYKSMHLKLLTLQDFKAVQIYMDAMNNSPDPCQVQLCKEKARAPPPLVPLPASLPLTKRVAVDKPKLLLPVIGPDPLPELPCEVEIKEDPGESVLRTDATLAQTRSESRESSTQGSCEIKTEEGNDNDVILLGDNLIEERTSDNENEYRKEEKHTSILEQVLTGNLTINDCKELTPKAKLSSQWWCSPCNSYYRTKSSLMKHMQLFCPRTYTCSKCSMIFQSVQELAKHEATNHLKVTFDFDETLKECHRCDREFVSWEMLRHHRLRDHIAESIENGTNTWCPLCNRFFPTVELYYSHKQLHDAGTLIAEEAMETESSSQAQEEVNEMKREHFIDSIKSLTCPTCGKVCTQQSALSNHMRTHEPKKHKCEICGRSFGLFIRLAAHRLSEHGQQPIMSPITASVEQEEALNAAREAREARVAKTQKSRIRTFSETVDDDRVSVEEPITAKNSAHANANSAKNVARCGICQQWFADHTTMLNHLQTHSDNLTSKSFSCRVCKKTFKEKWQMSRHEVSHKRSKGGYTCKTCNKSFKDKNQLKAHEPIHTVNKTYHCVKCNKIFFKEFSLMTHQCTGIPVFCKVNVNSGKRKTPSASSGKTKRQETSKDQGAANNSKSRSSRSRLTDESIHDNTVVELDNDEMPKLSPETSSNVLIPILEPKVEIKEHGSLSIPIKRTLIRTASGYRCGVCQSPFVLRELAVAHLRSAHPMMPYQCPYCKKRFTTQYTFTHHIKTDHPDETEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01056312;
90% Identity: iTF_01056312;
80% Identity: -