Ntho016804.1
Basic Information
- Insect
- Netelia thomsonii
- Gene Symbol
- -
- Assembly
- GCA_964017225.1
- Location
- OZ024925.1:6556709-6560353[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.099 7.5 7.4 0.0 1 23 367 389 367 389 0.95 2 12 1.2 89 4.0 0.5 1 19 390 408 390 411 0.89 3 12 5.9e-06 0.00045 20.6 1.5 2 23 478 499 477 499 0.97 4 12 0.00012 0.0094 16.5 0.2 1 23 505 527 505 527 0.98 5 12 0.0005 0.037 14.6 2.4 1 23 533 555 533 555 0.98 6 12 8.8e-06 0.00067 20.1 1.3 1 23 561 583 561 583 0.98 7 12 0.00032 0.025 15.2 1.4 1 23 589 611 589 611 0.98 8 12 0.00012 0.0089 16.6 2.5 1 23 619 641 619 641 0.98 9 12 0.0018 0.14 12.8 0.2 1 23 647 669 647 669 0.94 10 12 5.8e-05 0.0044 17.5 1.8 1 23 675 697 675 697 0.97 11 12 1.5e-05 0.0012 19.3 0.5 1 23 703 725 703 725 0.98 12 12 0.003 0.23 12.1 4.4 1 23 731 753 731 754 0.95
Sequence Information
- Coding Sequence
- ATGGCCATCGTCGTCGATGAATTCGATTACTTGTGTCGTTTGTGCGCCGCGAAGACTGGAATTTTAACGGGCTTACCTATTTTCGAAGCCGGCGAGCGTTTACGAAATATTGACAAAAAGATTGCTGCCTGCCTACCAGTACAGGTATCGATGAACGATCAGCTGCCGAAAGTCGTTTGCGAACCATGCGCTTACCAGCTTGATCGAATGTTCGATTTTCGTCAAAAGTGTTTGCACACCGAAGGTATGTTCATGGGTATGCTCAAAGAAATAAAGGACGAGGATGGTCACATGGAGCGTACGCTCAGGGAAGTCGAGGAAATTCCCGTCATACGAAACAGTATAGAAAGAATTCGTCGAAGCATCGGAAGTGGACAAAGGGACATTGACGATATTCGTAACGGCGACTGCGATGCTCGTGACGATCGGAGCGACGAGCCGATTCACACTTTGCAGGTGATGGATGAGATGGATTTAGCCGGCGGTGAACAGGTCGTTAGCCAGGAGGAAATCGGATCTCAGGAAACTGACATCGAGGTCGCAGGAATCCATTGTCTCGATGGAGATACCGTCAGGATGGTCGACGAACACATACGAGaaGTCTCCAATCAAGAGATCGCTATGCATCTGGAAGAAGACATGGCCGTTGTGGGTAATCTCACCGTCGACGGCCATCTCAGTCAGCTTGGAATAAATTATGTGACTACGATAGCGACCGACCGCCAGAGTCAAGAACGATTGGTCCATTATTGCGATAATATTAAATATGAGTCGGTCGAGGTCAAAGGAAAATACCAGAGACTACACGACGGAGTAGCGGCTAAGTGCTCGATGCATCCTATCAAACACGACGTTGCGACAGAAGGATTTTCCTCGTCCCATCAGGAAGCTGAGAGCGAACTCCAGCAGTCGGTAATAACCGAGAACGATAATCACGTAACCATGGAACCTGTACAGAGCGAGAATCACGCATCAACGAGCCGTGTCGAGAATAGCAAGGGAAATGATATAATAGTTGAATATACGAAAAGTTCGAAAGAATCATTGCTAGAAAATATACTTAATAATCCGACCCTCGATGAGACGGGATCGAACTGGTACGTTTGTCCATTCTGCAACGAAGCAGCGACAGAACCCAATAGTTTCGTGGCCCATTACGATCAGCATTTTTATTGCTGCAACTGCGGTCTATACTTTACGGGCGTCGAGATGTTAAGTCTTCACGAGGAACAATGCGGTTTTCACAAGAGAGTAGATTTAGTAGAGATAGAGGTCCAAGAGAACGAAGCCGAGGAGGAAGTAATATCCCGAAAAGATGAAATATCCGCAATTAAGACATCACCGAGGACAGATCAGTCGTCGACGATCGAGAATACGGTCGAGGACAATGTCAAGAGACAGCCGAACGTTAGGCAAAAATGGACCCCGAAAGTATGCGCACAGTGCGGTAAGCAATATCGCACGAATTACAAGCTACAGGAACATATGAGAAAGCACACGGGTGAAAAACCATTTCAATGTTTATTGTGCGAAAAAGCATTCCGCAGTAAAATCGGTCTCGCCCAACACACCGCGACGCATACCGGTGAATTCGATTACAACTGTTCGACTTGTGGCAAGGGATTTCAGTGCAAGAGTTACTTGATCGTCCATCAGCGAGTACACTCGGATCTCAAGCCATATCCTTGCAGCActtgcggtcaaaattttaaaaCGAAACAGTCTTTGTTGGATCATCAAAATCGTCATATGGGTATCAAGCCATACATGTGTGAAATATGCGGTAGAGGTTTCATAACGAAAGGACTATGCAAGACTCACCAGAAGATACACTCCGGCAAAGACAATCGTCAGTATCCTTGTCAAGTTTGCAACAAGATGTTCGTTTGTAAGAGTTACTTGAACACACATTTGCGCATTCACACGGGCGAAAAGCCGTATCTTTGCGAGGTATGCGGCAAGGTTTTCTTAACTCGCGTCGATCTCAAGATACACTCGACGATGCACACGGGAGAAAAGAGTTTCAATTGCGAGATGTGCGGCAAGGTATTTGCTCGTCGCGCCGCTCTCCGTTGTCACAGAAGATCGCACACGGGGGAAAGACCGTACACGTGTGATATTTGTGGCAAGACTTTCACGCAATTCAGTCCAATGGCGATACACAAACGTCTTCACACGGGTGAACGTCCGTACGAGTGCGACGTATGCGGGAAAGGTTTTGTCTCGAGATCGACGATGATGTGCCATAGGAAGAAACATCATTTGCCGTTGACGGCACCGCCCAAGGACGCGTTTACGAATTGCGACGAAACGAACAGAAAAACAGCAGATCCTACGAGCATCGGTGTCCGAGGGGCTCACGATGAAATGCAAATAACGGCAGATTGA
- Protein Sequence
- MAIVVDEFDYLCRLCAAKTGILTGLPIFEAGERLRNIDKKIAACLPVQVSMNDQLPKVVCEPCAYQLDRMFDFRQKCLHTEGMFMGMLKEIKDEDGHMERTLREVEEIPVIRNSIERIRRSIGSGQRDIDDIRNGDCDARDDRSDEPIHTLQVMDEMDLAGGEQVVSQEEIGSQETDIEVAGIHCLDGDTVRMVDEHIREVSNQEIAMHLEEDMAVVGNLTVDGHLSQLGINYVTTIATDRQSQERLVHYCDNIKYESVEVKGKYQRLHDGVAAKCSMHPIKHDVATEGFSSSHQEAESELQQSVITENDNHVTMEPVQSENHASTSRVENSKGNDIIVEYTKSSKESLLENILNNPTLDETGSNWYVCPFCNEAATEPNSFVAHYDQHFYCCNCGLYFTGVEMLSLHEEQCGFHKRVDLVEIEVQENEAEEEVISRKDEISAIKTSPRTDQSSTIENTVEDNVKRQPNVRQKWTPKVCAQCGKQYRTNYKLQEHMRKHTGEKPFQCLLCEKAFRSKIGLAQHTATHTGEFDYNCSTCGKGFQCKSYLIVHQRVHSDLKPYPCSTCGQNFKTKQSLLDHQNRHMGIKPYMCEICGRGFITKGLCKTHQKIHSGKDNRQYPCQVCNKMFVCKSYLNTHLRIHTGEKPYLCEVCGKVFLTRVDLKIHSTMHTGEKSFNCEMCGKVFARRAALRCHRRSHTGERPYTCDICGKTFTQFSPMAIHKRLHTGERPYECDVCGKGFVSRSTMMCHRKKHHLPLTAPPKDAFTNCDETNRKTADPTSIGVRGAHDEMQITAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01056280; iTF_01057853;
- 90% Identity
- iTF_01056280; iTF_01057853;
- 80% Identity
- -