Ntho008674.1
Basic Information
- Insect
- Netelia thomsonii
- Gene Symbol
- -
- Assembly
- GCA_964017225.1
- Location
- OZ024922.1:19356000-19358567[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 2.7 2.1e+02 2.8 0.1 2 21 121 139 120 140 0.83 2 14 0.0028 0.21 12.2 0.3 2 20 148 166 147 167 0.95 3 14 0.00028 0.021 15.4 1.1 1 23 175 198 175 198 0.93 4 14 6.8e-06 0.00051 20.5 1.8 1 23 204 226 204 226 0.98 5 14 0.00068 0.051 14.2 1.0 1 23 346 368 346 368 0.97 6 14 0.00046 0.035 14.7 0.5 2 21 379 398 378 399 0.93 7 14 0.00061 0.046 14.3 1.9 1 20 419 438 419 441 0.92 8 14 0.016 1.2 9.9 1.5 1 23 446 469 446 469 0.91 9 14 1.4e-06 0.0001 22.7 0.3 1 23 475 497 475 497 0.98 10 14 0.0022 0.17 12.5 6.3 1 23 504 526 504 526 0.98 11 14 0.00038 0.029 14.9 0.4 3 23 534 554 532 554 0.97 12 14 0.00044 0.033 14.8 0.2 1 23 560 583 560 583 0.96 13 14 0.53 40 5.0 0.1 1 23 597 619 597 619 0.93 14 14 0.12 8.7 7.1 0.0 2 23 833 854 832 854 0.96
Sequence Information
- Coding Sequence
- aTGGAATCTCACGAGAACGAGCACCATTACGTTGGTTTGCCATTGACCGGCGTGGACCACACGAGTATCGAAGAGAGCGTCGTGTCCCACGAGGAAATTTGCGAACCGGTGGACGAGTGTATACTTCCGGACAATCTCGTTACGGTCGACGTTACCGACGATATAACGGAAGCTCAAGTAGCTGTCGAAATTCTCACCTCTCAATCGGACGACGAAACCGATGACAAATCGATGATATATCCAATTTACATAAAAGAGGAAGAACATCATCAGTACACATCCGGCGACGACGAGTCGATGGCGGTCGAAGCTTTGCGCCAACTTGGCGGAATGTATCCATGCTTCGAGGACAAAAAGGTCCAATGCCCAAAATGCTCGATGTACATGACGCAGTCCGAATTAACGATACATCGTGAGACTTGTTCCTCCGAAGGAAAAATGTCGTGTTCCACCTGCAGCGAGAAATTCGAGCGTAAACAAGATTTGAACAATCACATTGTTTGCCATCAGGTAGATCGTCCACACGCGTGTCGTATATGCGGCAATTTATTTCGCTCAAAGGCCAATCTTCAGACTCACATGACGCAGGTTCATCGTGCCGAAAAACCGCACAAGTGCGAAATCTGCGGTGCGGATTTTCATCGTCCTTCGAGCCTCTCGAATCACATGAAGATTCACTCTTACGTGGCGGGTAGAGCTCTCATGCAAACGAGTACCAATGTACAGACGGAGAATCGACGCAAATGGACGGACGAGAGCGCCGCGTCCGGGAGTTTCGACGTACAATGGTCGGTGCCGTATAGTTTTACCGATCAAACGAGCGGCGCGGATAATAACGACAAGATGGACACGATGCAGGAATTCGCGGTAATACCGAACGGTGAAGTAACGCAATTCGAGTATACTCAAGATCCTCTCGCTCAGTTTAATATCACTACGACCTATCCTCAAAATACCGAGGTCAAGGTCGAAGGTCTGACCTTCACCCAAGATACACCGGTTAATTATCCGGAAACAGCGGAAGTCGTTAAATCTCACGTTTGTTCGCACTGTAGTGCAAGCTTCGTCCGCGCGACGGCGCTAGTGTCGCATGAAAAAATTCACGCCTCGGTAAAAACGTGGACGATGCCGATAGAGTGCGAATACTGCGATAAACAATTTCAAGACGCTAATCACTTGTCGAGCCATCAGACGACGTGCGCGAAAAAATTGATGCAAACGAGCGCCGAGCAGGGTAACGGTAAGTGGGGTAAACACGCGTGTGCCGAATGCGGCAAGAAATTCACCACCaaacagaaaatgtttcgtcatCAGTGGATTCATCGAAAGAAGACGCACTGTTGCGAAATCTGTGGTTCCCAGTTCGAGAGACAAAATCAATTGGACGAGCATCGTTTAGCCGCGCATCCGGGCGATTCGCCCTTCACCTGTACCGAATGCGGCAAAAGTTTCGTATCGAGGCAAGGCTTGTGGGAACATGGAAGAACTCACGCGGGCAGTCCGGCCCATTTTCATTGCGACACGTGCTCCAAGACATTTTCATCCAGACAAGGCTATCTTATACATCATCGTACGCACACGGGCGAAAGGCCTTACGGTTGCAAGTTTTGCTGGAAAGCGTTTCGCGATGGCGGCACCTTGCGAAAACACGAACGCATTCATACGGGCGAACGTCCGCACGTTTGCCCTCTGTGTTCGCGGGCGTTCAATCAAAAAGTCGTGCTGCGGGAGCACGTTCGTTGGGTACACGCCGCCGGTAAGAACGAGACCGAAGTCAGCGGGCCACCCTATCCGTGTCCTTTATGCGGAGCGCTCAATCAGGATCGCGACGAGCTCTGCGCGCATATCGTCAAACATTCCGATCAAATGATTGCCGAGGCTAAAGCAAAAACTAACAATAACGCGCCAGCGACGGCGAAAGCTGGTAGAAAAAAGTCACGCGCTACTAGCACAACCTCCAGTAGTACGAAGATAGCTCCGAGAGTCGAGGAAATTACGAGGAACGAGGAGACGGTGGCGCTGCTGTCGATAACGACGAGCCACGAGGACGGGGAAGCCGATGGTTCCGCCGCGATCGTCGACGATAGAGGCTGTCCAGCGGAAATGGAGGGAAACGAGGTTGAGTATGTCTCGATGAACGAGGGAATCGATGTAGTCAGAGAGATCGAACAAAGCGATGTGAATGTTTTGCATCTAATTGGGGAAGCTAAACGCGAGACGCTTCGGTTGATCGCGACCGGAAAATCTAAGAACACTCTTCATTTGATAACAAAACGGAATGAATCTTTGCCGGTTCTTGCGATTAGAAATCACGAGCAGAGCCATGAGAATTTTTCGAGCCAGATTAACGACGATGCGCATGCGTCGAGAAGAAACATAACGGTGTGCCTAAGCAACGACCAGGAGACGAATCAGGTTAGCGTTGAACAGGTCGCTCAGTATCTGCAGGATGGACGGAGGGAgagcgacgacgaggatgacgaagacgaagaaatgGTCTGTGGTATATGCGGCGATgatttcgacgataaaaatgttcTCATGGAACACGTTAAGATTCATATTTAG
- Protein Sequence
- MESHENEHHYVGLPLTGVDHTSIEESVVSHEEICEPVDECILPDNLVTVDVTDDITEAQVAVEILTSQSDDETDDKSMIYPIYIKEEEHHQYTSGDDESMAVEALRQLGGMYPCFEDKKVQCPKCSMYMTQSELTIHRETCSSEGKMSCSTCSEKFERKQDLNNHIVCHQVDRPHACRICGNLFRSKANLQTHMTQVHRAEKPHKCEICGADFHRPSSLSNHMKIHSYVAGRALMQTSTNVQTENRRKWTDESAASGSFDVQWSVPYSFTDQTSGADNNDKMDTMQEFAVIPNGEVTQFEYTQDPLAQFNITTTYPQNTEVKVEGLTFTQDTPVNYPETAEVVKSHVCSHCSASFVRATALVSHEKIHASVKTWTMPIECEYCDKQFQDANHLSSHQTTCAKKLMQTSAEQGNGKWGKHACAECGKKFTTKQKMFRHQWIHRKKTHCCEICGSQFERQNQLDEHRLAAHPGDSPFTCTECGKSFVSRQGLWEHGRTHAGSPAHFHCDTCSKTFSSRQGYLIHHRTHTGERPYGCKFCWKAFRDGGTLRKHERIHTGERPHVCPLCSRAFNQKVVLREHVRWVHAAGKNETEVSGPPYPCPLCGALNQDRDELCAHIVKHSDQMIAEAKAKTNNNAPATAKAGRKKSRATSTTSSSTKIAPRVEEITRNEETVALLSITTSHEDGEADGSAAIVDDRGCPAEMEGNEVEYVSMNEGIDVVREIEQSDVNVLHLIGEAKRETLRLIATGKSKNTLHLITKRNESLPVLAIRNHEQSHENFSSQINDDAHASRRNITVCLSNDQETNQVSVEQVAQYLQDGRRESDDEDDEDEEMVCGICGDDFDDKNVLMEHVKIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01057836;
- 90% Identity
- iTF_01057836;
- 80% Identity
- -