Ntho005346.1
Basic Information
- Insect
- Netelia thomsonii
- Gene Symbol
- -
- Assembly
- GCA_964017225.1
- Location
- OZ024921.1:8626063-8634537[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.15 11 6.8 3.8 1 23 405 427 405 427 0.98 2 19 0.00018 0.013 16.0 0.8 2 19 463 480 462 484 0.90 3 19 0.0067 0.51 11.0 4.8 1 23 490 512 490 512 0.98 4 19 0.0012 0.092 13.4 0.1 3 23 520 541 518 541 0.92 5 19 2.2 1.7e+02 3.1 1.1 1 23 548 571 548 571 0.96 6 19 4.8e-05 0.0036 17.8 0.7 1 23 575 597 575 597 0.97 7 19 0.0022 0.16 12.6 0.5 1 23 603 625 603 625 0.98 8 19 6.7e-05 0.0051 17.3 2.0 1 23 631 653 631 653 0.96 9 19 0.00085 0.064 13.9 0.1 1 17 658 674 658 675 0.92 10 19 0.3 23 5.8 0.9 1 20 1022 1041 1022 1044 0.91 11 19 4.1 3.1e+02 2.3 1.5 1 23 1050 1073 1050 1073 0.95 12 19 6e-05 0.0046 17.5 0.2 1 23 1079 1101 1079 1101 0.98 13 19 0.32 24 5.8 1.2 1 23 1107 1129 1107 1129 0.95 14 19 5.5e-06 0.00042 20.7 0.7 2 23 1136 1157 1135 1157 0.97 15 19 1.2 90 3.9 1.9 1 20 1164 1183 1164 1187 0.89 16 19 1.5e-05 0.0012 19.3 2.8 1 23 1191 1213 1191 1213 0.98 17 19 0.1 7.8 7.3 2.9 1 23 1218 1240 1218 1240 0.98 18 19 3.8e-08 2.9e-06 27.5 0.3 1 23 1246 1268 1246 1268 0.98 19 19 0.0013 0.098 13.3 1.2 1 21 1273 1293 1273 1294 0.93
Sequence Information
- Coding Sequence
- ATGGAGATGAAGTTGGAGGAGGCGCAAATCTGCAGACTATGCGGAGAATGCGAGAGTATATACATCGATGTTTTCGGCGAGGAAGGCACAAAGAGATTTCTCGGCATCAAGATTCATACGAAAATCAACATTGTGATAGATGAGACGGACCCTCTGCCCAAGGCGATCTGTGTACAGTGTTTGGGCAAGCTCGAATTCGTTTGCGACTTTCAAGAGGAGTGTCTACGCACCCAACAAGTGTTGCGCGAACGATACAATCTGCCACCATTAACAGACGTTGACGAGATAAAAATCGAGGAATCCACTGTCGACGCGGCtggaaaatcaacaaacaacaACAGCACTGACAAAAATCTCAATCCGCCGTTGGAAAATGAAATTGAGATAACAAACACGTACGAGAAGGGCCTATCCGAAAATGTTCCTACTCCAAAGCCGAAGAAGAAAGTACGTAATCGTCGCAGATCGATATCCCAGAGCGAGAATGAAAAACCCAACAGCGAACAGGAGAATTGTCCTCGCGAGACGTCGACACCCATGGAAAATGTGAACAAGCGTTGGCTTCGAAGTCGAAACTCTGCGGCGCCATCGACGATCACGACGACTTCGAATCAGCCTTCGAAAACACCGACGGCATCGATAGCGAGCAGATTACGAAGTCAGAGCGATTCGCCGGACAAAAGCAAGGAGACCAttgaaaattctccgtcgatTCCAGGGCCAAAGTCGAAATGCGACGAAACAAGCATGATACAAATCCCAACTTCGGCACTGAACAAAGTTCTCACCGTTGTCTCGAGCTCTCCGGAGATGGAAGTTTCGGTAAAAGAATCGACGAAACGTCAAGGTGACATAGAAGACATAAGTTTCACTCTGGAATTACGACGGAAGAAAcgcgacaacgaattaatgactgTCCTTGCCAAGGTATTTCCCGATCAAGGCTCGTGTCTCGTCGGTTCGGGCATCGTCGATCTTCTCGAGAACGAAAACAACGCCGAGGTCGATAAAATCGTTAGTACGATAATAAACGGCTCGGTTGGTAGAAAGAAAAACGGCACTAGCGACGTCGGCGAAATAACGAAAATCGCCGAACTCGAGGAGATGGAGAAGAGACTAAGCACCAGTCAAAATCCTGAGGAATTATACAGGGTCGACGGCGAGGAGATACGAGTCGATGACAATATCGAGTACGTCGACAGTCGGACCGGTTATGCCTGCAAGTTGTGTCGAAAGATGTACGAGCGTCGCGACAAATGTACCGTCCACGTTAAAACTCATCTAGGCATAAAACAATACGCCTGTACGCTCTGTTGCGCAAAGTTTGTCTGCAAATCCGACGTTATGAAACACATAAGATGTTCCCATACCAATCCACGTCCAATGCAATGTCCGAAGTGTCCGAAAAGATTTCGATCAAAGTTCGATCTCACGGAGCACGACAATGTTCACAAAGGGATCAAGCCCTATCGTTGCGACAATTGCGAGCAGAGCTATCATCACAAAGTATCGTTACAGATGCACGTTAAATCCCATCAGCCACCTCAGAATCTCGCTTGCGAATATTGCGGAAAGGTATTTCCCTTTCGTACGCGTCTTCTGTCTCACATAGGGAGCGTACATTTGAAAAATCGGCGAAACTTTCGTTGTCGTTTCTGTTACAATCTCTACTCGAGTCTAGCAGTACTGAACGATCACATAAAGTCCCGTCATGCTACGACTTATACTTGTGAGATTTGTTCGAAAACTTTCAAAGTTGCATCAAAGTACAAGGCACACGTGCTGCAACATTCCAATCCAAAGCCATTCGTTTGTAACGTTTGCAACAATCGATACGCCTCGAAAGCTTTTCTCAATGAGCATCTCCTCAAACACGAGGGACTTCGCAAAcacatttgccaaaaatgtggCGCTAGCTTCGCTCAGGCGAGTCATTTGGCTGCTCATCGTCACGTTCACGGTGAAAAGATTCACGTTTGTCCGGATTGCGGTCGTAAATTCAACAGACGAGACAACATGAAAATCAACGAAGCTGACGGATTGCCTCACAAAGTCTGTGTAAGATGTCTCGGAGCTTTGGAATTTCTGTGCGACTTTCACGACCAATGTCACAAGACTCAGGAAAGATTGATCGAGGCGAAACAGACACTGATGAAATGTTCAAAGATGAGGAGTTCTCTCTCGCCGGAATTACCGAACGACGCCGATTCGGACAAGGAAAATTGCGCGCCAATAGTCAGACGATCAGTTgccaaaagaaaaagacaaggaACAAACTCAGAAATTGCGAAGATAGAAAATGTCTCACACCTTGCCTGCAACAACAGTCTAACGATCGATATTCAAGAGTCTGAGAGATCTCAAGCGGATATGAAAATAACCCAATATAATCAAGCAAAGAAGAGTAAACATGAAATTGTCGAGAATATGGAATTATCATCGACTGCAGAAAGCATAGCGAGTGATAAAATAATCTCACCACGAACGTCCATAATTATAGAGAAACAGACGATCGCGAGTAATCCCGTCGTTCGCGATGAAGAACCCACGGAGCGAAGAACTCGAAGCCAAACAATTTGCAATATTAATAATAGTAAACGTAAAACCCAAGATGAAACGAAATTCAAACTAGATTCACGTAACAACAAAACGATCTCCTCTATCGTTAAGCTTGAGAAGAATGAGCGCTGCGACGAAAAATCGACAACTTTGGGTattgaaaaaatcgacaaatcgaACAAAATTGTATGGATACCTAACGATACGCCACTATTTTTCCAAGCAGACAAAAGTATGGGAATGGAAAGGCCGAAAGAGTtaccagaagaaaaaaagaagacggaaAAGCCAGCTAAAGAGACCCCGTCGACtttagggaaaaaaatgaaagaggatGATTGCGAAGAGGAAGAAGGCAGCGAATCGCGTAAAAAATTCGGCAAAATTACAGATCTTATAAGCGATGAACAGAAAAGCGCTATCGAGAAGTACTACAGCGTCGACATGTCGAGCGTCGATGAGCGACTCGTTGGGGAAAAAATTCGATTTCTCGATAAGAAGAAATTTGCCTGTACGCTTTGCGATGCGACTTATACGCGACAGGACAAATGTCAGGTTCATATTTGGGGACATCTGGAGATGAAACCATATCGCTGCAACGCTTGTGATTTTGCTACGGTGACCGTCAGCAATATACGCTGCCACGTGAGAAAGAGCCATCTCAAGATAAAACCTTACGCATGCGAGCTTTGCGAGAAGCGTTACGTGACCGCATTTCTTCTCGAGGAACACATGAACACGCACACAGGTTCGAGACCGTATACCTGCAATATATGCAATTTTACTAGCGCCAGTAGACAGGTACTCAGCTATCACAATACTACTCACAAACCGACCAAGGACATAACGTGTCATGAGTGTGGCAAAGAGTTTTACTCAAAGGGTCGTCTACGTGCTCATATGATTGTTCACGACAAGGACAAGAAGGCTCATATGTGCAAATTATGCTCGATATATTTGTGCAGCAACGAGGCACTGCAGAGACATAATGTTAATGTACACTCCAAGGATTACGTGTGCAACATTTGCGGCAAACGTTGTCAGTCCAAGAAATCTCTGAACAATCATCAGAACGTACATTCGGCCGCAAAATACAAGTGCACGCTGTGCTCCAACGTCTACAAAAGCAGTCACATACTCAAGGAGCATCTCTTGAAGCACGAAGGCATAAGAAAGTACAAATGCAATATATGCGGCAAAGATTTTGCTCAGCAGTCTCATCTTGCGGCTCACATGGCAGTTCATAGCGATAAACGATTCTTCTGTCCCGGATGTAAACGGCCCTTCAACCGTCACGATAACATGAAGATGCACGCAAAACGTTGCGAGGCTTTCCTCGCCAATCCCGAGCTCAAGAGCATTCTGAAAGTGCGAAGAAGTAGAAGCAAGCCTGCCGCGAATGAAGGAAAATCTGTTGGGGAATTGAAAAAACCCATACAAAGCATGGTTCTACCTCAAATCGAACATATCAAGACTGATTTTAGTACAAATAATCGGCcgattatcgataatcgtttcgaGATATTCACGAATTCTAATGACGTCGCAGGCGCCGACAATAGCCCGGTGGTCATTGAAAAAATGATTGTCCTTGAATGCACGTAA
- Protein Sequence
- MEMKLEEAQICRLCGECESIYIDVFGEEGTKRFLGIKIHTKINIVIDETDPLPKAICVQCLGKLEFVCDFQEECLRTQQVLRERYNLPPLTDVDEIKIEESTVDAAGKSTNNNSTDKNLNPPLENEIEITNTYEKGLSENVPTPKPKKKVRNRRRSISQSENEKPNSEQENCPRETSTPMENVNKRWLRSRNSAAPSTITTTSNQPSKTPTASIASRLRSQSDSPDKSKETIENSPSIPGPKSKCDETSMIQIPTSALNKVLTVVSSSPEMEVSVKESTKRQGDIEDISFTLELRRKKRDNELMTVLAKVFPDQGSCLVGSGIVDLLENENNAEVDKIVSTIINGSVGRKKNGTSDVGEITKIAELEEMEKRLSTSQNPEELYRVDGEEIRVDDNIEYVDSRTGYACKLCRKMYERRDKCTVHVKTHLGIKQYACTLCCAKFVCKSDVMKHIRCSHTNPRPMQCPKCPKRFRSKFDLTEHDNVHKGIKPYRCDNCEQSYHHKVSLQMHVKSHQPPQNLACEYCGKVFPFRTRLLSHIGSVHLKNRRNFRCRFCYNLYSSLAVLNDHIKSRHATTYTCEICSKTFKVASKYKAHVLQHSNPKPFVCNVCNNRYASKAFLNEHLLKHEGLRKHICQKCGASFAQASHLAAHRHVHGEKIHVCPDCGRKFNRRDNMKINEADGLPHKVCVRCLGALEFLCDFHDQCHKTQERLIEAKQTLMKCSKMRSSLSPELPNDADSDKENCAPIVRRSVAKRKRQGTNSEIAKIENVSHLACNNSLTIDIQESERSQADMKITQYNQAKKSKHEIVENMELSSTAESIASDKIISPRTSIIIEKQTIASNPVVRDEEPTERRTRSQTICNINNSKRKTQDETKFKLDSRNNKTISSIVKLEKNERCDEKSTTLGIEKIDKSNKIVWIPNDTPLFFQADKSMGMERPKELPEEKKKTEKPAKETPSTLGKKMKEDDCEEEEGSESRKKFGKITDLISDEQKSAIEKYYSVDMSSVDERLVGEKIRFLDKKKFACTLCDATYTRQDKCQVHIWGHLEMKPYRCNACDFATVTVSNIRCHVRKSHLKIKPYACELCEKRYVTAFLLEEHMNTHTGSRPYTCNICNFTSASRQVLSYHNTTHKPTKDITCHECGKEFYSKGRLRAHMIVHDKDKKAHMCKLCSIYLCSNEALQRHNVNVHSKDYVCNICGKRCQSKKSLNNHQNVHSAAKYKCTLCSNVYKSSHILKEHLLKHEGIRKYKCNICGKDFAQQSHLAAHMAVHSDKRFFCPGCKRPFNRHDNMKMHAKRCEAFLANPELKSILKVRRSRSKPAANEGKSVGELKKPIQSMVLPQIEHIKTDFSTNNRPIIDNRFEIFTNSNDVAGADNSPVVIEKMIVLECT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -