Ntho012759.1
Basic Information
- Insect
- Netelia thomsonii
- Gene Symbol
- -
- Assembly
- GCA_964017225.1
- Location
- OZ024923.1:37315786-37318239[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0075 0.56 10.9 0.8 2 23 23 44 22 44 0.97 2 12 0.0017 0.13 12.9 0.8 1 23 82 105 82 105 0.97 3 12 6.5e-06 0.00049 20.5 0.6 3 23 113 133 111 133 0.97 4 12 0.00011 0.008 16.7 3.8 3 23 141 161 139 161 0.96 5 12 1.4e-07 1e-05 25.8 0.5 1 23 167 189 167 189 0.98 6 12 0.019 1.5 9.6 3.0 1 23 230 252 230 252 0.97 7 12 5.9e-05 0.0044 17.5 1.1 1 23 600 622 600 622 0.97 8 12 0.00011 0.0081 16.7 0.4 1 23 629 652 629 652 0.93 9 12 2.2e-05 0.0017 18.8 0.1 1 23 660 683 660 683 0.97 10 12 3e-05 0.0022 18.4 4.1 1 23 689 711 689 711 0.98 11 12 0.0013 0.099 13.3 4.1 1 23 717 739 717 739 0.98 12 12 8.4e-07 6.3e-05 23.3 0.5 1 23 745 767 745 767 0.98
Sequence Information
- Coding Sequence
- ATGGATGCTACCGACGATGGTTCCCTCATGCTTTCCACAGTTGAAAATGCAAAATTAACATCCTTGACCTGTTCTATATGCGCCAAGcaattttccaacgaaaaaCGCTATTTCGGTCATCTCAGAGTTCATAGCAGCGCTGTTTCAAGGTCTTCCGAACAATGCTCGCACTCCGGAGTGTCTTTCGAGTCTAAAACAAGACTAAAAATTCATGATCGCTTTCACCACTCCCTGGAGAGGCCCTATAAATGTTCGAAATGTGAGAATATCTTCGAGCGAGCTTCTCAGCTCGATTATCACAATCGTAGCGTTCATCAGCGTGAAAAGTCCCAAATTTGCCAGATCTGCGGAAAAGGTTTCTTTCGTAAGAACGATCTTCGTACACATCTAAATGTTCATCTCGGCACTAATCGGTCCATTTGTGAGATATGCGGACGAAAGTTCAATCACGTCTCTAATCTCATAAGACACTGTCGAACTCACGTTGGTTCTAAACCTTATCCTTGTACTATTTGTGGTAAACGTTTTACCCAGATAAGTTCCCTGGCTAGGCACAAACGTATACACGATCGTGTTCTCAACGAAACGTTTGATTCAAAAAAACGCCAGGAAACAATGAACGTTCGAATTTCGGAAAATCCGGACGATCTTTCCGAATTACCCGAAAAGACAATAAAAAAGCGTCAACATTACTGCAGAACGTGCGGTGAAAGCTTTCAATTTATGGTTCTATTGAGACAACACAAGAAAATTCATATCAGATTCATGGAAAAGACGCAAGCGAGCGATGAAACGCTTTCTACCAAAGATTCGATTCAATCAAGCACGAATATTTCGCAAAACACAGATAAAGTAACGATTTTGGAAACTAATGTCGCAAATTTAGTGGAACAAGAAACTCCGGATAATTCCATTCGCGATCATCTCATGGAATTAGCGAGAAAGATGAATTGCATCGAAATCGAATCCGAGCGAGATGTGAGTATAAGCATTTCCGATATTCTCAGTCCCTATAATTGCAACGAAATTGAGGTATCGAATAATGATACTTTGGAATCAAAATTGGAGACTCACAACGAGGTTTTGGGAAAGGAATATGACATAGTACAATGCTTGAACAGCGTGGACTTTTCCAACGTTGATTCTAAATTGCCGGATGTTTCGAGTATAGAATCCAATACGGAAGACAGTGGCAATCATCCAAAATCGCAATCTAGAGAATCAAAGGCGGAAAGATCTAAAGAATTGCTCGCCGAACAAGACAAATGTATGCACGTCAAGAGTAGAGAGTTGTACTCGGATATCTGTGAATCGGAATATCTGAAGAATTCTCAAGTCCAATCGTTGGAACTTGAAGAAATCGAGAACGTTTCTGGCTTTCAAGAAAATGCGAATAGGAAGAATTTGAGTTTGGAGAATTTCGAGAAATCCACGAATGAAACAAGTCCCGGTGACTTTATTCAACGATTTCCAAATATCGAGAATTATCGCGAGTTGCACGCGTCTGGACAAAACGATACGACGCAGATGCCTCGGGTGCGTCTCGTGCAGAACGAGGACGGTGAGCAATTCTTCGAGCTCATTCGCGAACCTCTGGAGTACGAGAGAAATCGAAATACCGAAAATACTCGTGAAAAAAATCCTGAAAATTCTCCTATTAACATTACCGATACAGCAAGAATCTCTGGTAAGACGAAGCAACAAATCTCGGCAAGCACGAATTCAGGAATCAAGAGAGACAAAAAGGAGATCGGCTCGGAGAGTGGACGAAATACGACGAAAGATCGCACGCGTAAATTTAAATGCAACGAATGCGACAAATGGTTTTCAACGGCGTACAATTTTAAACAACACGCCGGTACACATTTCTCGGATCAGCAAAGATTTCGATGCAAAGATTGCGGTCTCACGTTCGCCTGGAAATCTACTTTGAACAAACACCTGGCGGGCAATCATCGTCCCGATGGACCTTTGAAATTCGTTTGCGAAATTTGTCCAAAAGTCTACAGTACGCTCTCTCAAGTAAACgAGCACGTGAAGAGGGATCATCTGAAAGAGCGAAATCACGTTTGTCCCCTGTGCGACAAATCTTTCTTCAAGAAATTTGATCTCAAGACCCACAGTCGAACTCACACGGACGAACGACCCTACGTGTGTCGAGCGTGCGGCAAGGGTTTCCATCATCAGAGTCATATTATAAGACACGAGCGTATACACTCGGGCGAACGTCCTTACGAGTGTGATATTTGCCAGAGAGCTTTTACTCAGCCAGGGTCGCTGAAAACTCATAGACAGAGGCATCGAGACGTTAAGATCGATATACTCGAATATCGAATGGACGAGGACGATCCTATGACACTGGCTGTGcaatag
- Protein Sequence
- MDATDDGSLMLSTVENAKLTSLTCSICAKQFSNEKRYFGHLRVHSSAVSRSSEQCSHSGVSFESKTRLKIHDRFHHSLERPYKCSKCENIFERASQLDYHNRSVHQREKSQICQICGKGFFRKNDLRTHLNVHLGTNRSICEICGRKFNHVSNLIRHCRTHVGSKPYPCTICGKRFTQISSLARHKRIHDRVLNETFDSKKRQETMNVRISENPDDLSELPEKTIKKRQHYCRTCGESFQFMVLLRQHKKIHIRFMEKTQASDETLSTKDSIQSSTNISQNTDKVTILETNVANLVEQETPDNSIRDHLMELARKMNCIEIESERDVSISISDILSPYNCNEIEVSNNDTLESKLETHNEVLGKEYDIVQCLNSVDFSNVDSKLPDVSSIESNTEDSGNHPKSQSRESKAERSKELLAEQDKCMHVKSRELYSDICESEYLKNSQVQSLELEEIENVSGFQENANRKNLSLENFEKSTNETSPGDFIQRFPNIENYRELHASGQNDTTQMPRVRLVQNEDGEQFFELIREPLEYERNRNTENTREKNPENSPINITDTARISGKTKQQISASTNSGIKRDKKEIGSESGRNTTKDRTRKFKCNECDKWFSTAYNFKQHAGTHFSDQQRFRCKDCGLTFAWKSTLNKHLAGNHRPDGPLKFVCEICPKVYSTLSQVNEHVKRDHLKERNHVCPLCDKSFFKKFDLKTHSRTHTDERPYVCRACGKGFHHQSHIIRHERIHSGERPYECDICQRAFTQPGSLKTHRQRHRDVKIDILEYRMDEDDPMTLAVQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01056254; iTF_01057826;
- 90% Identity
- -
- 80% Identity
- -