Ntho001965.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Netelia thomsonii
Gene Symbol
ECU06_1150
Assembly
GCA_964017225.1
Location
OZ024920.1:5509475-5513488[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 24 0.00031 0.023 15.2 0.6 2 23 288 309 287 309 0.96
2 24 6.3e-06 0.00047 20.6 1.2 1 23 319 341 319 341 0.99
3 24 2.6e-06 0.0002 21.8 0.9 1 23 347 370 347 370 0.95
4 24 0.0022 0.17 12.5 1.3 1 23 376 398 376 398 0.98
5 24 0.00089 0.068 13.8 3.1 1 23 404 426 404 426 0.96
6 24 0.00022 0.016 15.7 2.2 1 23 432 454 432 454 0.98
7 24 0.00039 0.03 14.9 1.8 1 23 460 482 460 482 0.98
8 24 0.036 2.7 8.7 0.1 1 15 488 502 488 504 0.91
9 24 1.6e-05 0.0012 19.3 0.7 2 20 547 565 546 567 0.93
10 24 0.014 1 10.1 0.4 1 23 599 622 599 622 0.96
11 24 0.00011 0.0083 16.6 1.9 1 23 654 676 654 676 0.98
12 24 1.8e-05 0.0013 19.2 1.6 1 23 682 705 682 705 0.97
13 24 8.9e-06 0.00067 20.1 0.7 1 23 711 733 711 733 0.98
14 24 5.4e-07 4.1e-05 23.9 0.6 1 23 739 761 739 761 0.98
15 24 0.00022 0.016 15.7 1.3 1 23 767 789 767 789 0.98
16 24 1.5e-05 0.0011 19.4 1.7 1 23 795 817 795 817 0.97
17 24 3.7e-05 0.0028 18.1 0.8 2 23 824 846 823 846 0.96
18 24 0.00094 0.071 13.7 0.9 1 23 898 920 898 920 0.98
19 24 0.0016 0.12 13.0 1.0 1 23 926 949 926 949 0.95
20 24 0.002 0.15 12.7 0.6 1 23 955 977 955 977 0.97
21 24 5.1e-05 0.0038 17.7 4.0 1 23 983 1005 983 1005 0.96
22 24 4.4e-06 0.00034 21.0 0.9 1 23 1011 1033 1011 1033 0.98
23 24 7.3e-05 0.0055 17.2 3.4 1 23 1039 1061 1039 1061 0.96
24 24 0.00017 0.013 16.0 0.6 1 23 1068 1091 1068 1091 0.96

Sequence Information

Coding Sequence
ATGGCGACGAGAGGAACCGCGATTTCGAATGCGTCCGAAAATAATTCCGCCGAACAATATGTGGAATATGATATCGAGGAGAAACCTCAAGTTTCCATCGATAGTGACGAACAAACGGAGTCGACCGAACAATTGTTTAGCTGGTCACAGATTTGTAGAGTCTGCGCCAATGCCAATGATCACATTATACCTATATTCGAAGCCGAGGGAGCGGAGCACGATTTGATCAACAAAATTCACAAATATCTGCCGATTCAGGTTTCCAAGACGGACACTTTGCCTCTGCAACTGTGCTATCATTGCGCGGCTACGATACTTGCGTGGCACGAACTTCTCGAAGGTTGCTTGGATGCCGAGAAACAACTTTTGGAGATGCAAGTTgaacaaattgaaaaacaacAATCGGAAACAAAATCCGGCGAAAATCTGAAAGAGGAGCAAGTCGAAGACGCGGAACAAGCGATCATGGAGCAACGGGAAGAAGATCCGACGGAACATAGCATTATTGGCGAAGAACCAACGAAAAGGTCGGATAGAGCGGAGGAGACATTTAAAGTATTCCTCGAAGCACTCAATATATGTCGAAGAACGAGAAGATCGACAGTCCCGGTTAACGACGAAAAACCCACGGGAATGCAAAAAATAGACGATTTTTGCCCAAGCACGATAAGCCCGAACTTGCAAGTGTCCGTGGATGAAAACCCTGACCGTCCGATTGAAAAGACTTCGAGGAAAATCCCAAGGAGGaacgaaaaacgtaaaaaatttcCAGTCTCAAAATTCGATACACGATACGAAGAAACAATAAATCGCGACGATGATACGAGTCCCGACGAGGATGACGAAAAAATCGTTAGAGTTAAATGCAACGTTTGTTCTCGTGAATTTTCTCACATAAAAGAacttcgcgcgcacatcgaagaACACAAAAATATTCCAGCGGCCAGAAATCCCTATAAATGCGACGAGTGTTCCAAAGCTTTTCGCCTCAAGGACTCGTACCTTCGTCATCTAAGAATTCACCGAGACGAACGACCGTTCACGTGTCACATATGCGGTAAACAATTTCGCGACTCCGGCGGTCTTTCACGACACGTGAAAGACGTTCAtgcgaaattgaaaaatttctccTGCGACATCTGCAACAATAGCTTTTCGTCGAGGGCGACGCGCGACGATCATCGACGCACTCACACGGGCGAGAGACCCTATGCTTGCGACAATTGCAACAAATCGTTTAAATCACGCGCCTGCCTTTATATTCACAGTAAACTTCACACCGACGAATTTCCCTATCCTTGCGTACATTGCGAGAAAAAATTTCGTCGTAGACAAGAGATGCTCGTTCATCTATCGACGCACACCGGCGAGAAGAATTACAGCTGCGACGTTTGTTCCCGACGTTTTCGGGTCAAGAACGAAGTCAAGAGGCACAAACTTACGCATTCCGACGAAAAACCTTACGTTTGCGCCAAGTGCGGTCTGAGCTTTCGACAAAATCacgAGTGGGTGGAAAGCGCAACGAAGCGCACGACGAGACTCTCCCGCCGAGGCCCACGAGAACTTCCGTCTAAGAACGACGAGTATTCTTCGGACGAGAGAAGCAAAGCTCGAAAAAAGTTTCAGAGCGCGAGACTGTCGTGCGACAAATGTTCGAGAGTTTTCAAGAGAGCGAGTAATTTGAAGAAACACACGGAAAATTGTGCGAATAATCAAGAACCGAAGGAGACGATAAAGCGCAAGGATAACGATGAGAACGATCTCGAGACTTCCCAAAAAGTACGAAAATCGAATTATCCCTGTCTGTACTGCGATTACAtcgcgacgaagaaaaaactCCTGGAACTTCATACGCGCGAGAATCACGAGGGAAATTCGATTCTCGAGAAGAGACAAAAGCGAGAAATCGACAACGATCTCGTGACACGCGCCAGGATGGAAGTAAACGGACGGATTTATTATCACTGCGACGATTGTGGCAAAAATCTCTTCTCGCCTTACACTTTCTTCTGGCACATGAGAATTCACACCGGCGAGCGACCTTTCACTTGTCACTTATGCGGCAAACAATTTCGCGTCAATCAGGGTCTCGCTCGTCATCTTCGCGAGACACACGACGGTATTAAAAATTTCTCTTGCGATATTTGCGGTCGCATGTTCTCGACGAAACGTAACGTTGACGATCATCGACGCATTCACACGGGTGAACGTCCTTTCGTCTGCAACATATGCGGAAAAGCTTTCAAACAAAAAGCCTCGCTGTTCGTTCACAATCGTTCCCACACGGATTCATTTCCGTTCAAGTGTAATCATTGCGGACAGGGCTTTCGCACGAGGCCACCGCTCGTTCTTCATCTTACAAAACACACCGGTGAAAAGCCTCACACTTGCGACATATGCGATCGCGCATTTCGTATCAAATACGAGCTCAAACGACATCGTTTGATACATTTCGACGATAAGCCTTGGCGATGCGACGATTGCGAGCTCTCGTTTCGACAGAAACGATACTTGGTCAATCATCGTAGGATCAATCACAGTGATACGAAAATTACCCGAACGAATTTATCCGGAAAAGCGACCGCCGAGAATATCGAGACGCGAACGAGATTGAAACGAACGAGGCGAGAGTCGAGGGAGATCGCTGACGAATTGACTCGCTCGAGAATCCATCTGGATGGAAAAACTTACTACAAGTGTCGAGATTGCGAGAAGATTATCTCGAGATCTTACAATTTCGTCGAGCACCGCGCGAGACACACATCTGAAAAACCTTACGAGTGTCGAGTATGCTCGAAAAAATTTCGTTTCGCCTCGATTCTCAATCGTCATCTAAAAGACGTGCACGCCGGAAGAAAGACGTTTCCTTGCGACATCTGTGAGCGTCGTTTCGCGACGAAAACGACGCGGGACGAACATCGTAGAATTCACACCGGTGAACGTCCTCACGTTTGCGAGACTTGCGGCAAGGCATTCAAGCAAAAAGCCTCGCTTCACGTACACAAACGTTTTCACGGTGGGGATACTCCGTACACGTGCGAAATATGCAAACGAGCTTTTCGACAGAAGCAAGATCTTGTTAAGCACGAATTGACGCACACGGGCGATAAGCCACACGCGTGTCCCGTGTGCGACAAGAAATTTCGTACGATCGGATGCTTGAGGAGACACGGAAAGACTCACGAGAATTTGGAAAAAAGACACGTTTGCGAACAGTGCGGTATGGCTTTTGGTCAAAATCGTTATCTGAAAAATCACGCGAGAAACGTTCACGGAAAAAGCATCGCAAAGAAATCTTAG
Protein Sequence
MATRGTAISNASENNSAEQYVEYDIEEKPQVSIDSDEQTESTEQLFSWSQICRVCANANDHIIPIFEAEGAEHDLINKIHKYLPIQVSKTDTLPLQLCYHCAATILAWHELLEGCLDAEKQLLEMQVEQIEKQQSETKSGENLKEEQVEDAEQAIMEQREEDPTEHSIIGEEPTKRSDRAEETFKVFLEALNICRRTRRSTVPVNDEKPTGMQKIDDFCPSTISPNLQVSVDENPDRPIEKTSRKIPRRNEKRKKFPVSKFDTRYEETINRDDDTSPDEDDEKIVRVKCNVCSREFSHIKELRAHIEEHKNIPAARNPYKCDECSKAFRLKDSYLRHLRIHRDERPFTCHICGKQFRDSGGLSRHVKDVHAKLKNFSCDICNNSFSSRATRDDHRRTHTGERPYACDNCNKSFKSRACLYIHSKLHTDEFPYPCVHCEKKFRRRQEMLVHLSTHTGEKNYSCDVCSRRFRVKNEVKRHKLTHSDEKPYVCAKCGLSFRQNHEWVESATKRTTRLSRRGPRELPSKNDEYSSDERSKARKKFQSARLSCDKCSRVFKRASNLKKHTENCANNQEPKETIKRKDNDENDLETSQKVRKSNYPCLYCDYIATKKKLLELHTRENHEGNSILEKRQKREIDNDLVTRARMEVNGRIYYHCDDCGKNLFSPYTFFWHMRIHTGERPFTCHLCGKQFRVNQGLARHLRETHDGIKNFSCDICGRMFSTKRNVDDHRRIHTGERPFVCNICGKAFKQKASLFVHNRSHTDSFPFKCNHCGQGFRTRPPLVLHLTKHTGEKPHTCDICDRAFRIKYELKRHRLIHFDDKPWRCDDCELSFRQKRYLVNHRRINHSDTKITRTNLSGKATAENIETRTRLKRTRRESREIADELTRSRIHLDGKTYYKCRDCEKIISRSYNFVEHRARHTSEKPYECRVCSKKFRFASILNRHLKDVHAGRKTFPCDICERRFATKTTRDEHRRIHTGERPHVCETCGKAFKQKASLHVHKRFHGGDTPYTCEICKRAFRQKQDLVKHELTHTGDKPHACPVCDKKFRTIGCLRRHGKTHENLEKRHVCEQCGMAFGQNRYLKNHARNVHGKSIAKKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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