Ntho016642.1
Basic Information
- Insect
- Netelia thomsonii
- Gene Symbol
- -
- Assembly
- GCA_964017225.1
- Location
- OZ024925.1:3946670-3947050[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.5e-08 2.3e-05 24.1 0.1 3 38 17 52 15 57 0.93
Sequence Information
- Coding Sequence
- ATGCCTAAATTCAAAGGAAGAACATCAAATCGAGGAAATTGGAGTTACGAAAATATGAGAAGGGCGATAAAAGACGTTCTTGAATATAAGTCTTCTGAGAGAGCTGCTGCAGAACATTATATGATTCCTCGCACTACACTACAGGACCATGTTAAGGCCATACAACAAGGTCACTCGATTAATCTTGAGCCAAAGCTCGGCCGGTTTGAAGAAACATTCACTGCCGAATACGAAAAACAGCTTTGTGAGCATATCAAAGATCTGGATAATCGTCTCATGCctgtaacgagaaaagagtTTTTATCGTTGGCGATACCGAAGATCGTTTGCCGTTGCCGTGACCGTTGCCGAAAAAGATACCGAATGTATCATTTGTGGTGA
- Protein Sequence
- MPKFKGRTSNRGNWSYENMRRAIKDVLEYKSSERAAAEHYMIPRTTLQDHVKAIQQGHSINLEPKLGRFEETFTAEYEKQLCEHIKDLDNRLMPVTRKEFLSLAIPKIVCRCRDRCRKRYRMYHLW
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00439393; iTF_01056737; iTF_01056738; iTF_01056739; iTF_01056740; iTF_01056741; iTF_01056730; iTF_01056733; iTF_01056734; iTF_01056735; iTF_01056736;
- 90% Identity
- iTF_01056737; iTF_01056738; iTF_01056739; iTF_01056740; iTF_01056741; iTF_01056730; iTF_01056733; iTF_01056734; iTF_01056735; iTF_01056736;
- 80% Identity
- -