Ntho002843.1
Basic Information
- Insect
- Netelia thomsonii
- Gene Symbol
- Jrkl
- Assembly
- GCA_964017225.1
- Location
- OZ024920.1:23519727-23520635[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.4e-09 1.2e-06 28.3 0.0 2 42 16 56 15 59 0.86 2 2 4.2 2.1e+03 -1.4 0.1 13 21 135 144 132 146 0.84
Sequence Information
- Coding Sequence
- ATGCCCAGAAATCGCCAAAGAATAACCGCTAAAGCGGCTTGGAACGAAGAAGACCTTAAATCTGCTAAAACAGCGATTGAAGATGGAATGTCAAAAAGACAAGCCGCGAAACGATTCAACATCCCATTCACTACTTTGATAGATCgactaaaaaatgaaaatatgagCAACCCAAGACTAGGTCGTAAGCCCATTTTCACCCCACAACAGGAAGATGAAATTGCTAAACAAATTAAGCTACTGGGGTCGATATACTATGGACTCAGTGTCGCAGATTTGCGTAaagttttttataaatatgctGAGCTCAACAATATCAAAAACAATTTTGATCAAAGCAGCAAAACAGCCGGTTTGGATTGGGTACACGGCTTTATGCGACGCAACTGTTCAGTTTCTCTCCGCAAAGGTAAAGTAATGAGCTTGAATAGGGTTTCTGCTTTCAACAAAGAAGAATTAACACGTTTCTACGACAAACTTGATGACTTAATGGAAAAATATAAGTTCCGTCCAAACAATATTTTCAATGCTGACGAGACCGGTATCACCACAGTGACAGATCCAGGAAAAGTGCTCGCCGAAAAAGGGCAACGAAGAGTCGGAGCTGTTACAAGTGGCGAACGAGGTCGCAATATAACCGTAATGTGTGCTATGAGTGCAGTCGCAAACTTCATACCACCAATGTTCATTTCTGCCAGACAGAGAATAACGCCTTTAATAGAAAAAGATGGACCACCTGGTGCATTATACACCAACTCTAAGAATGGCTGGATAAATGAAGAATTATTTGTCACCTGGCTCAAACATTTCGTAGTATACGCTAAGCCTACCCAAGAATCACCTATACTATTGATACTGGATAACCACCGTAGGCACATTTCCCTTCACGCTTTTAATTTTTGGACGTAA
- Protein Sequence
- MPRNRQRITAKAAWNEEDLKSAKTAIEDGMSKRQAAKRFNIPFTTLIDRLKNENMSNPRLGRKPIFTPQQEDEIAKQIKLLGSIYYGLSVADLRKVFYKYAELNNIKNNFDQSSKTAGLDWVHGFMRRNCSVSLRKGKVMSLNRVSAFNKEELTRFYDKLDDLMEKYKFRPNNIFNADETGITTVTDPGKVLAEKGQRRVGAVTSGERGRNITVMCAMSAVANFIPPMFISARQRITPLIEKDGPPGALYTNSKNGWINEELFVTWLKHFVVYAKPTQESPILLILDNHRRHISLHAFNFWT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01516506;
- 90% Identity
- -
- 80% Identity
- -