Ntho005695.1
Basic Information
- Insect
- Netelia thomsonii
- Gene Symbol
- -
- Assembly
- GCA_964017225.1
- Location
- OZ024921.1:14029982-14042700[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.1e-10 4.6e-07 29.6 0.0 3 38 16 52 14 57 0.90 2 2 6.9 3.4e+03 -2.0 0.0 30 37 508 515 508 517 0.85
Sequence Information
- Coding Sequence
- ATGCCGAGAAATTAccaaagaaagacagagaccaAATATAAATTAGAAGACTTGGAGCGAGCCGTTCAGGCTGTCAAAAACAATACACTTACACTGGGTAAAGCAGCTACCAATTACTCTGTCCCAAAAAGCACTATACATGACTATCTCAAGAAAGAAGTTATCAAGACTCCAAAAACTGGAAGAAAGGCTATATTTTCTGAACATCAAGAAAAAGAATTCGAGGAGCATATTTTAAAATGCAGCAAATTATTTTATGGTTTAACTATAGAGATGGTCCGCAAAATAGCCTTCACATTTGCCGAAGCAAATAATTTAAAGCACAATTTTGACAAAACATCCCAAATGGCGGGAAGAAACTGGTTCTATGGCTATAAAAAAAGGCATCCTAATATTTCACTTCGTAAACCAGAGTCCACTTCTATTAATAGAATCACAGCCTTTAACGAAACAGAAtaCAATGCTATTCCGTATCTGGGAAAAATAAGTACGTCAGCCAATGAGTCCGTTTCAGAGTATTTTCTGAGAGAAGTTTCCCATTCACGGCTCAGGTCGCAACATCACCTGCGACAATTGGTTTACTTCTATTCTAATTGTACAAAGATGATGGCGCCAGATATAAACTTGCGCATTACTGGTACGATTAGAAAGAATAAGCACGAAATCCCGCAGGAGATGAAAATAGCCGGAAAGGAAATTCCATCGTCGAAATTCTATTTCACGGACAAATTGACATTGGTGGCGTACACTCTGAAGAAAAATCGTCTTATTGCTAACCTCGCTTTTACACGCATAAAGGCGGACAGATTTGAGAATCTTGCAGCTCAAATAGAAGAATTATTTCCAGGAGAAAATAAATTCACTTATTATTCACCATACAGACGCGTGGGAAATGTTCGTATTAACCCTTCCGGAACATTGTACGAACATTACCAATATTTGAAAAGTTCACTCAGAAAAGTCAACATTTTGGAACGTGTGCACGAAGGGCCCGATCAACAACCAGCCATTACCGatGTTGAATCGGAATGCCTTGCCTGGTTAAAAAATCACATTGAGCCAGAAGAAACAGTTCTCTCACACTGGAGAGCATCGTTTAATGCCCGGAAAAATCTTTTGAGCCAAGGTATAACCGTCTCGGAGTATTTCAATACCTTTCCCATCCTGAGGAACCAATTTGGCAAAAAATTGTTGGAGTCCGATTTCCGGAAAATTCAAATCCCGGATGGAAATTTTTTCGACACTTGGGAGGAAGTCCGGGATTTTTTGATCGCGGAAATTAAATcatgcgaaaaaataaaagacgtgGCAGATAAAGCATTCGTACATTTGTTGCCAACGCTACTAttgcACAATAAAGACGTCATCATTTTGCACTTGCTGATATATCTGATAGACGGATCGCAACTCCAGAAAAGGAAGCGGAATCTTCGGGGAAATGACCTAAATGCCAGTCACAAATGTGCAAATGTGGAAAGACGGGCAAGTTTTTTCATACACATCGAGACAGCAGAGAATTTGCACACCACgctggaaagaagaaaagatgaGCTTCGGTCAAATCATCTAACGCTGCAGCCTACGCCGATATTCGTGGGACCATTACTTGCCATTGAAGCAGCctacgtattaattaacgataCGTTGTACGTGGTCGATTCTCCACTGCACGCAATCGAATTTTGCTTCAAAGCATTTACAGCTCTAGACTGTGCATTTCCGGAACAGGCTAAATCGCTTTGGACATTTATCCAACaggcatttttcaaaatttttttacgGACAGATATTCCAAATCGTTCGGTTAACGTTTTGGTCGGTCAAATTGCAAAGTTATCAGCAAGGCACACTGAAAACTGA
- Protein Sequence
- MPRNYQRKTETKYKLEDLERAVQAVKNNTLTLGKAATNYSVPKSTIHDYLKKEVIKTPKTGRKAIFSEHQEKEFEEHILKCSKLFYGLTIEMVRKIAFTFAEANNLKHNFDKTSQMAGRNWFYGYKKRHPNISLRKPESTSINRITAFNETEYNAIPYLGKISTSANESVSEYFLREVSHSRLRSQHHLRQLVYFYSNCTKMMAPDINLRITGTIRKNKHEIPQEMKIAGKEIPSSKFYFTDKLTLVAYTLKKNRLIANLAFTRIKADRFENLAAQIEELFPGENKFTYYSPYRRVGNVRINPSGTLYEHYQYLKSSLRKVNILERVHEGPDQQPAITDVESECLAWLKNHIEPEETVLSHWRASFNARKNLLSQGITVSEYFNTFPILRNQFGKKLLESDFRKIQIPDGNFFDTWEEVRDFLIAEIKSCEKIKDVADKAFVHLLPTLLLHNKDVIILHLLIYLIDGSQLQKRKRNLRGNDLNASHKCANVERRASFFIHIETAENLHTTLERRKDELRSNHLTLQPTPIFVGPLLAIEAAYVLINDTLYVVDSPLHAIEFCFKAFTALDCAFPEQAKSLWTFIQQAFFKIFLRTDIPNRSVNVLVGQIAKLSARHTEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -