Nmel016038.1
Basic Information
- Insect
- Netelia melanura
- Gene Symbol
- Zfy1
- Assembly
- GCA_964007305.1
- Location
- OZ023257.1:17677076-17689330[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 2.4 2.7e+02 2.9 0.1 1 23 84 109 84 109 0.88 2 19 0.084 9.8 7.5 6.6 1 23 116 139 116 139 0.96 3 19 0.00067 0.078 14.1 0.7 2 23 155 176 154 177 0.95 4 19 8.3 9.7e+02 1.2 5.2 1 23 183 205 183 205 0.97 5 19 0.0015 0.18 12.9 0.7 2 23 211 232 210 232 0.97 6 19 7.1 8.3e+02 1.4 0.3 6 23 490 507 488 508 0.90 7 19 0.0021 0.24 12.5 2.2 2 21 519 538 518 539 0.95 8 19 2.4 2.7e+02 2.9 1.0 1 23 604 626 604 626 0.82 9 19 0.048 5.6 8.2 1.3 2 23 808 829 807 829 0.97 10 19 0.075 8.8 7.6 0.1 1 23 845 867 845 867 0.95 11 19 0.036 4.2 8.6 0.5 1 23 875 897 875 897 0.97 12 19 0.27 32 5.8 2.4 2 23 1000 1021 999 1021 0.95 13 19 2.5 2.9e+02 2.8 2.4 3 23 1033 1053 1032 1053 0.94 14 19 0.0033 0.38 11.9 0.2 1 23 1130 1152 1130 1152 0.98 15 19 0.037 4.3 8.6 0.3 1 23 1242 1264 1242 1264 0.97 16 19 3.4e-05 0.0039 18.1 0.8 1 23 1270 1292 1270 1292 0.97 17 19 0.0055 0.64 11.2 2.6 1 23 1341 1363 1341 1363 0.97 18 19 0.0017 0.2 12.8 1.8 1 23 1369 1391 1369 1391 0.98 19 19 0.041 4.8 8.4 0.8 2 23 1485 1506 1484 1506 0.97
Sequence Information
- Coding Sequence
- ATGTCGGAACGTTCACCACGTTTGCGAGGTTTAAGACCTCGTGCACAGCAGCGTTCTCCGCAACCCAGAAATCCTCCTATCGAGACTATGAAAGTGAATGAAACCGATGACAGCGTGGGACACACGGAGCAAGACCAGGATCGTGATGTTGACACATCGGAGACATTGACCGATGACGAGCTTCACATTGCCATAAAGGATGAGCAGGATGATGGTATTTCTGACGATAAATCCGACAACGAAAAGAGCTATGAATGCAAAACTTGCAAAACACCAGTGGGATTCGCGACTCTCGTCGAGTACCTTCAGCATCTGAGGGACGAACACAAGGAAAAGGGTCGAAGTTACGATTGTCCACACTGCGATTTCATTTGTCACCATCCAAAGAGTCTTCAGGAACATTATAACTCGGAGCATAAGGATCTCGACAGTGTTCCAGCGCCCGAAGATCTTGCATCTAATCAATGCACTATGTGCTCTTACACCGGGGCTAGTGCGAGCGAATTGGAAAATCATCAGCGCATTCATCATCTTAAgagacgtttttttcgttgcaGCAAGTGTTCCTATATGACTCACGTTAGAGCTCGTTATACGAAACACGTCAAGTACCATTCGATGCCGATGATTAAGTGCGACGATTGCGATTTTCGTACACCCTACAAGTGGAATTTGGATAGGCATACGCGTAATCACGGAGGCGATGGAGCATTTCAATGTCGAGCTTGCAGCTTTACCGCCGACATACGCCAGAGTCTCACGGTCCACGAGACCAATCATCACGAGCCACCAGTCGGACAGGCTCATCGAAGGCTTAACACGCCATTCGAACGTAAATCACGGAACGGTCCAAAACGTTACAATCAGGTTGGAGCGAGTGACTTTCGTGACACGAATCAATCGGAAGGTCCTCCTGTTCAGAAAAATCGTAGTCCTGCCAAGTCGCCGTGCTCGGACGGCGCGGGAAGCTCGTTAGATGACAGAAGGAACGCGATTGCGGGAGCTGAATGTATAGCATTGAAATGCGAGGAAAAGGGTTGCCAATTCATAACAGCGTGGGATTCGGAGATGCAGCGACATTTGGCCGAATCTCACGCACCGTCGTTATCGCCCATTAAACTTCGGAAACCTTTGCCTATGCTGATCCCATTGAGTCCCGATAGCGACTCCGGGACGACCAACAAAACCACTTCGAACGAATCGCCGACGACGCTTCTGAAAGTGCCGAGGGTTCGAGTGAGACCGGAACTTGCTCGGATAGCCCGAGATACCGAGATCGCCAAACTCTACGGTAATCGAGAGGGTAGTGGGGGTGGTGGAAAAAAGGAGGGCCCTGCAGCAGACTCTTTCGAGAAGAGGAACGCTTCGTTCTTCGACAAGCTCAAGGAACGATTGATGTCTACGAGCGCCAGCATCGCTGGTGGAACCAACGTGGCCGTAAGTAACGCGAACGATTTAAAGTGTTGGTGTACCTACGAAGCTAGTAGCCCGGAGGAATTGGCCAGTCATAGTCAGACCCATCATACAGCGCTGAGTGTATCGGTCGGTGTATCGCGCTGCCCTAAGTGTCGAAGGCGTTGTAAGAGTTCCACCGATCTTCAAATGCACATGAACATTTGTCAAGCTACAAGCAATGATTTAACGACAGTCGATAGTTTCCTGGAGAGTCCGGCAAATTGTACGAATTATGAGGCCGCATCATACTGCGGTGATTTTGAGTTTCCGTTTCAAGTGGACTGGGACGGGAGTTTCGGAGGACTGAATTCTTCTGGATCGTCGGTCGAGGGTCACACGATCGGACGTCGGGTATTCAAGTGTCCTCATTGTCCGTTCTGGGCGTCAACGGCGAGCCGATTTCACGTACACATTGTGGGTCATTTGAATCGTAAGCCATTCGAGTGTTCACTCTGTGCGTACAGATCGAACTGGCGTTGGGACATTACAAAGCACATCAAGCTCAAGGCGGCGAGAGATCCGGCTCACATGACCGCCAGGGTTCTTATGACTGACGAAACGGGCCGACGTAATTATTCCAAATACAACAAATATCTTGCTCAGATCGAACAGCAGGGTACCGAAGAAACGGGACTGGACGAAGCTCCTGCCACCGAAGCTCAAATCGACGAACCACCAAAGAAGCTTCTCATAATGAGCGATGCGAAGAGTTTTACGGGACCACCGGAACTGACTCCGGCACCGTCGGTCGCCGATAACGCCGAAACAAATTCGATGAGCATTCTGACAGCATTGAATCTCCGACCACCACCACCCCTCAAGTCCGCTGGTAGGAGCCAAGGTCAATCGTTGTTGAAGACTAATCCAGCGACCGGTAACTCCGTATCGGTATTGTCTGCGACTGTTGTTCCCGCAACAATAGTGACCAACCCTACCACGGCCGAAGAAACTAAGCGCACTCTGTGGAAGTGTAAACGCTGCAATTTCCGTTCTTCGAGCAAAGAAACAGTACTGGCGCATGTCAAGACTCATTATGATACAACGGAGCAAGCGAGTACGAATAACGAAAAGAACGAGTTCAACTGTCCGGATTGTCCGTACATCACTAACGACGCAACGGCCATGGCGATACATCGAATTCATCATCGTCCGAATCTGGAAGCGATCTTCAAATGTTATCTCTGCCCATATTACGTCAGCACGAAGCAAGAATTACTAGAACACGCGAAACTTCACGGGGAGGAACTCGCAGTTGTTCATCAGAGAAACGTGGATGCTGCTTCGACTGGCACAAAACGGAAATCACCGCAAACACCAACGACAAACGACAATGaaaattcatcgaaaccCGAAAGCGCTATCGAAGAAGTCGTTCCAGTTGCAGCCTCGATCTCCACGACAAGTACGAGCGACGAGGCAAACAACAACACCACGAACGACCAGCCATCGAACGCGGCACCTCTGTTGTTGGATACACGCGCGTTGCCAGACACGCCGTTAGTCTGGGTGTCTCGACCCGATGGAACACTGGCCAAGATGCTAAAATGTCGTCACTGCCCTCATGTCTCGTCGAGGCGCGCCGAGGTGCGCGATCACGAGACGATGCACGTTAATGCACCGACCAGCGGACCCTTGGTCGCGTGTTCCGATTGCAGTTTCACGTGTTCTCGTCATGATGTTATGGAATCGCACGCGGATATGCACATGGGTTCTCTCGGCACAGTTCATTGTCTCGTCGACGAGGGTCGTACCGACGCTCAGCAACTCGAAGATCTCGCGTCCCTTCTCGGTCTGGCACGTACACCGTCACTCGGTCCCGAGCCCGACATTCGGGACACTCGCCTCGTCCATTGTTGCTCCAAGTGCCCGGCACGTTTCCTCTGCGAGAAAGAATTACGCATACATTTGCGTTATCATTCTACGGAACTAGCCTACTCGTGTCAGTGGTGTTCTTACGCGGCCCGACAGCCGGCTCATCTCTTGGCTCATCAAAAGGCACATTCCTCCGAGTATCAGGAACGCACGCGGTATCTCCTGTCGATGTACGGGCATTCACAAAGATACGCACCGCCGAGTACGGCGTGCGTCGAGTCGTCTGGCGGCCAACGATCGACAGCGACGAATGATCAAGAGGGCCAAAGTAGCGAGCATCGCAGGAATAACATTGCTTGGATCGTCGTCGAGCTGTCCCCGAACGTCTCGACAGGGCAGAATTATGCGGCAAGCAGCGAGCCGCAGCTCGGTGACACGCGAAACGGCAATCAGGTATTCACGTGCGCCAAATGTCCGGCGCGTTATTTCAAACTCGATGCTCTCGAGTATCACATGACCCTTCATGGTTCCAACAACAGATTTAAGTGTACGGAGTGCGATTATTCGTCAAAAACCGCCCAGAATTTGATGAAACATCAGGTCGTACATCGCAGGCACCACGTTGAAGCGAGCGAACCTGCAGCCACTCGCCCTTCTTCCTCGCCCGATCCTCAATTTGGTCCCTCGATGAGAGGAAATCCAAATTTCGTTTACCCGGGAGCTATCAGAAATGGTCGTGTTAAAGAGAAACGTTACAAGTGCCATAAGTGTCCATCCGCTTTTGAAAAGCGCGAACAATATCGAGTTCATTTGACTTTACACGGTGCCAAGCAACGTTTTCGTTGCGACAAGTGCGATTATTCTGTCAAGTATTACGCCAATTTTGTTCAACACGTGAAGAAACATCAGGCAAATGCACAGGCTCAAGCGGATCGACGACAGTACGAGACCGAGCCGATTGTTCTCGACAGCGATAGTTTAACCGAAAACGAAAGTCCTCAGGCTCGTTCGCCTGCCAAAAATCGGCGCAAATCGACGATATCTTCGACCCTGGCTCCGGCTTCCGAAAATGGCATTGTTGGTACGAATCTCTTACAACCGTCCAATCAAGATAAACAATCTGTACTCCTTATGCAGAAAAAAGGCGTTTCGATCTCGTCCTTGACCGAAAACAATAAACTCCTGCGATGTCAGGACTGTCCATTTTCTGGCACTGACAAAGACACTATGGACTCGCACAAACGACGTCACGGTATTGAGAGATTAACTCCACCCTGTCCGCACTGTAATTACGTGCCGCGCAAGGACGAGGCGGTTGGCGAACACATAAGATTGCACTTCACCAGACTCTACAAACCCGACTCTTATCTCATCGTCGAGCTATTGTCGCTCACAATGAGACCTTTTTTCCCCAACAAGGACGATCAACACAAGGATTCCGAGCTACTTTTTCGTGAATTTCCAGACGGAAAATTCGTACCAACTGCCGAATCAAACCTGTCGCCGTCCGAGTCGGCAGGTATCAATGGTTATCAAGAAAAAGTAATCGTCGATCCAAACACAGGTGAGACCAAACATCGTTATTGCGCATAG
- Protein Sequence
- MSERSPRLRGLRPRAQQRSPQPRNPPIETMKVNETDDSVGHTEQDQDRDVDTSETLTDDELHIAIKDEQDDGISDDKSDNEKSYECKTCKTPVGFATLVEYLQHLRDEHKEKGRSYDCPHCDFICHHPKSLQEHYNSEHKDLDSVPAPEDLASNQCTMCSYTGASASELENHQRIHHLKRRFFRCSKCSYMTHVRARYTKHVKYHSMPMIKCDDCDFRTPYKWNLDRHTRNHGGDGAFQCRACSFTADIRQSLTVHETNHHEPPVGQAHRRLNTPFERKSRNGPKRYNQVGASDFRDTNQSEGPPVQKNRSPAKSPCSDGAGSSLDDRRNAIAGAECIALKCEEKGCQFITAWDSEMQRHLAESHAPSLSPIKLRKPLPMLIPLSPDSDSGTTNKTTSNESPTTLLKVPRVRVRPELARIARDTEIAKLYGNREGSGGGGKKEGPAADSFEKRNASFFDKLKERLMSTSASIAGGTNVAVSNANDLKCWCTYEASSPEELASHSQTHHTALSVSVGVSRCPKCRRRCKSSTDLQMHMNICQATSNDLTTVDSFLESPANCTNYEAASYCGDFEFPFQVDWDGSFGGLNSSGSSVEGHTIGRRVFKCPHCPFWASTASRFHVHIVGHLNRKPFECSLCAYRSNWRWDITKHIKLKAARDPAHMTARVLMTDETGRRNYSKYNKYLAQIEQQGTEETGLDEAPATEAQIDEPPKKLLIMSDAKSFTGPPELTPAPSVADNAETNSMSILTALNLRPPPPLKSAGRSQGQSLLKTNPATGNSVSVLSATVVPATIVTNPTTAEETKRTLWKCKRCNFRSSSKETVLAHVKTHYDTTEQASTNNEKNEFNCPDCPYITNDATAMAIHRIHHRPNLEAIFKCYLCPYYVSTKQELLEHAKLHGEELAVVHQRNVDAASTGTKRKSPQTPTTNDNENSSKPESAIEEVVPVAASISTTSTSDEANNNTTNDQPSNAAPLLLDTRALPDTPLVWVSRPDGTLAKMLKCRHCPHVSSRRAEVRDHETMHVNAPTSGPLVACSDCSFTCSRHDVMESHADMHMGSLGTVHCLVDEGRTDAQQLEDLASLLGLARTPSLGPEPDIRDTRLVHCCSKCPARFLCEKELRIHLRYHSTELAYSCQWCSYAARQPAHLLAHQKAHSSEYQERTRYLLSMYGHSQRYAPPSTACVESSGGQRSTATNDQEGQSSEHRRNNIAWIVVELSPNVSTGQNYAASSEPQLGDTRNGNQVFTCAKCPARYFKLDALEYHMTLHGSNNRFKCTECDYSSKTAQNLMKHQVVHRRHHVEASEPAATRPSSSPDPQFGPSMRGNPNFVYPGAIRNGRVKEKRYKCHKCPSAFEKREQYRVHLTLHGAKQRFRCDKCDYSVKYYANFVQHVKKHQANAQAQADRRQYETEPIVLDSDSLTENESPQARSPAKNRRKSTISSTLAPASENGIVGTNLLQPSNQDKQSVLLMQKKGVSISSLTENNKLLRCQDCPFSGTDKDTMDSHKRRHGIERLTPPCPHCNYVPRKDEAVGEHIRLHFTRLYKPDSYLIVELLSLTMRPFFPNKDDQHKDSELLFREFPDGKFVPTAESNLSPSESAGINGYQEKVIVDPNTGETKHRYCA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00629454;
- 90% Identity
- iTF_01057220;
- 80% Identity
- -