Nmel005311.1
Basic Information
- Insect
- Netelia melanura
- Gene Symbol
- -
- Assembly
- GCA_964007305.1
- Location
- OZ023254.1:36840812-36844226[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0021 0.25 12.5 0.1 3 23 490 512 489 512 0.94 2 10 0.087 10 7.4 1.8 1 23 518 542 518 542 0.98 3 10 0.00047 0.055 14.5 0.6 1 23 548 572 548 572 0.94 4 10 0.00026 0.03 15.4 0.2 3 23 580 602 578 602 0.93 5 10 0.042 4.8 8.4 6.1 1 21 609 631 609 633 0.95 6 10 0.00011 0.012 16.6 0.6 2 23 641 664 640 664 0.95 7 10 4.1e-06 0.00048 21.0 2.5 1 23 670 694 670 694 0.98 8 10 0.00075 0.087 13.9 0.3 1 23 700 724 700 724 0.96 9 10 0.0018 0.21 12.7 6.7 1 23 730 752 730 752 0.99 10 10 0.62 72 4.7 0.1 1 23 838 863 838 863 0.94
Sequence Information
- Coding Sequence
- ATGCCTCGCAAAGGGGTTCCGACATTATGCAAAGCCAAACAAATACCACGAATATTTCAACGTCGCAATCAGCTAGTTCGGGGTGTAGTTCGCGGTAGCTTTGGACTGCTGGAAGGTGCGAACATCGACGGTAATATTGCGAGTGTTCAGGACAATTCGAGTGTTCACTTGATTGTGGAATCAAACGACGGCGGAAACAAACATTTAATCAGTGAGAAAATAAAGGGTCATGAAAATGGTTCATTCAAAACAGACGATTATTCAACGAGCAATTGGAACACCTGTGAACAAGTCAGTGTAAATCCTATCGCCGTAAAGATCGACGTCGAGTCACCGGTCGAAAATAGTGTAAGCACCGATGCTGTGGACGACATCGAGAAATGGTTAAAAACACGAACGGAGTCGATCTCGAGTATCGAACTGGACACGATGAAATGTGTCgtcgaagaggaagaagacgaggaggacgaggaggaccaggaagaagaggaggaggaggaaagcgTTGGAGTGGATCGTTACCTCGCCGACGATTTACCTCATGCTTTTCTCGGCAAGGACCCTGACGGTTTGTCCATTGACATCGATTTATCTGACAAGAAATTAAATCTTGGCTACGATCCTCTGATCCAAGAAATGCAGAGCGATAAGCTCCTTGAGGTTTGCGAGAAGAACGATGACTTTATACTGCCAGAATTCCAACTCGATCAGCTTGATCCTCTGGCTCTGTCGCCCGATGACATGATGGTAGCTGGGGAGATCTTGCCCTCGACCAGTAATCAGCCAAATTTGCCGATGAACATGGAACGAGAGATGGATCCTTCGGACATTCAGATCGGTGGTCAAAATGTTAATACCGTAGAGTCCGAATCTGGCAAAGTCAGTGATAAACCCGTACAGTCTGATGTTTACGATTTGGTAGAAGAACTTGAAGAGATAGACGAGGAGATTCAAATGGATGAAGCACATGGTACTTGTATGATGGAAACGATTATTCAGCCTCAAATCGTTTCGCCGATAAATGGAAATGGCAAATCACATCTTGCGGCAATGTCAAAGCTTGAAGGTAGAACAAAAGCAAAGAGTAAATCGGAACCAAgaataatgaagaaacataaaagAATATGGCCAAAATCCGATAAAAATGCAATAACATTTGTTGGGGATCCCTGTCGTATTGATGGAAAAGATGGTGTAATGGCAGTTGTAGCTATATCTACtgacaaaatatcgaatatgACGCAAATTGTGATAAATACAGGTATGGATGAGCAGATATATCAAGGAAAGACGTCAGAACTTATTGAAGCGACGggaaattttccaaaactttCTAAAATGGAAATGGAAAACAGTGGACGTAACAGGCCGCACGAGAGGGTCGTCTCTAAGGCACTTGAGGAGCTAGGAATTACAGATGAATCGTTAAGACCAACTTCAATGGGTGAAAATGGAAATGCTTGGCTTTGTCCAAGGGATGAATGCAATCGAGAGTTCAGCAAGCTTTATGCTCTTAAAGCCCATTTGATTGCTCATTATGGTGTACGACCATACAAGTGTGACTACGAGGGCTGTGCCTGGGCTTTTCATTCAGATTTCAAGCTTAAGCGTCATAAGGAAACTCACTTGAAACGGAAGAATTTTGCTTGCGAGGTGTCTGGTTGCAATCGTCGTTTTACGACGGTTTACAATCTTTGGAGTCACAAAAAGTTGCATACACGACCAAATCGCATAGTATGCCAAGTACCCGATTGTCAGGAAAAATTTCAGACCAAAAGAGCTTTAGAATTGCACATGAGAAAGCACGATCAGAGCCACGCGCCTTACGTTTGTAATCACGAGGGTTGTGGCAAGCGTTATTATACGTGCAATGCACTCACGTCGCATCAGCGATGTCACAATTACAAAGAAATCGACGTGAAATGTTCATGGCCTGGttgtggaaaaatatttgataaaccTTGTAGACTAAAGGCTCACATGCGATCGCATACAGGCAGTAAGCCTTACACATGCACCTACCAGGATTGCCAATGGGCATTCTCCTCGTCCAGTAAGCTCAAGAGACACCAGAAGAAGCAcacgaatgagagaaaatttaTCTGTGATGTCGAGGGTTGCGGCAAAGCTTTTCTCCGCTCGGAACATCTTAAGGGGCATCTTCTGACTCATGCAGGTGGTGGTTATTTTCAATGTCACATGTGTGATGCACATTTCTGTGCAAAAAGTAGCCTGTATGTTCACATAAAGAAGCATCAAGTCAAAGAGGCTGTTGATACGATAATAGATAATGGTGTCAAAGGCTCGAAACGAAAATTGCGGAATCCTCAAGTACCGAACGAGAGTTCCTTGACAACGATTGCCAATGAGTCGTCAACAGACTCACCGCATCCTgagaaatttcacgaaaatttaatttatgcAAATCCAATGAATTTCCAAGATTCAGCACGGACGGTCGTCCCTCAGAAACCTTCGAAAACTGTTAGAAAAGAACGCAACAGCGTGTCTTACAATTGCGACATGGAACAATGCGATTTTTCGCCCAAAACTCTATCGAGTTTGGGAGCGCACATGGTCACGATGCACGCAAGTACAAGCGTGAACAGTGAAAAATCGTCCATCGAAATTTCTCCAATCGAGGATGCTTCGGATCTTGATTACATAATGTACGAGACACCAAGGACTACGGAAAACTGCGAGACACGAAATATGATGCTCCAATCTTGCGACTCTGTAATACTTAGCGAAACTCCGAAAAATATTGCTTGCCTTCCGGAACCTGAGCCTCCGCCTCATTTTAATGCAAATCCAACAATCTCATCAAATGGCTGTGGTATTGCCGGGGAGAAGAAATCTTATGAccagcgagagaggaaaacgaGCCAAGGTTCGGCAAGAACGGGACTGACGTATGCAGACGTTTGGAAATTGAAGTGTAAGGACGACGCGACGGAAACGACGGTCGTTGGAGCGTCCGACGTTGTTCTTGGTACAGCCAATCTCAACGAGGGGCTTTTACTCACTGAGGAATTGCCGTCGATGTATTATCATGATGATATGGTGGGAACCGAGTGTCAAATATTGTTACTCGATTCGGGAAATCACGAGAACTCGATCGATTTGCGAGGACTGGAATGA
- Protein Sequence
- MPRKGVPTLCKAKQIPRIFQRRNQLVRGVVRGSFGLLEGANIDGNIASVQDNSSVHLIVESNDGGNKHLISEKIKGHENGSFKTDDYSTSNWNTCEQVSVNPIAVKIDVESPVENSVSTDAVDDIEKWLKTRTESISSIELDTMKCVVEEEEDEEDEEDQEEEEEEESVGVDRYLADDLPHAFLGKDPDGLSIDIDLSDKKLNLGYDPLIQEMQSDKLLEVCEKNDDFILPEFQLDQLDPLALSPDDMMVAGEILPSTSNQPNLPMNMEREMDPSDIQIGGQNVNTVESESGKVSDKPVQSDVYDLVEELEEIDEEIQMDEAHGTCMMETIIQPQIVSPINGNGKSHLAAMSKLEGRTKAKSKSEPRIMKKHKRIWPKSDKNAITFVGDPCRIDGKDGVMAVVAISTDKISNMTQIVINTGMDEQIYQGKTSELIEATGNFPKLSKMEMENSGRNRPHERVVSKALEELGITDESLRPTSMGENGNAWLCPRDECNREFSKLYALKAHLIAHYGVRPYKCDYEGCAWAFHSDFKLKRHKETHLKRKNFACEVSGCNRRFTTVYNLWSHKKLHTRPNRIVCQVPDCQEKFQTKRALELHMRKHDQSHAPYVCNHEGCGKRYYTCNALTSHQRCHNYKEIDVKCSWPGCGKIFDKPCRLKAHMRSHTGSKPYTCTYQDCQWAFSSSSKLKRHQKKHTNERKFICDVEGCGKAFLRSEHLKGHLLTHAGGGYFQCHMCDAHFCAKSSLYVHIKKHQVKEAVDTIIDNGVKGSKRKLRNPQVPNESSLTTIANESSTDSPHPEKFHENLIYANPMNFQDSARTVVPQKPSKTVRKERNSVSYNCDMEQCDFSPKTLSSLGAHMVTMHASTSVNSEKSSIEISPIEDASDLDYIMYETPRTTENCETRNMMLQSCDSVILSETPKNIACLPEPEPPPHFNANPTISSNGCGIAGEKKSYDQRERKTSQGSARTGLTYADVWKLKCKDDATETTVVGASDVVLGTANLNEGLLLTEELPSMYYHDDMVGTECQILLLDSGNHENSIDLRGLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01057899; iTF_01057161;
- 90% Identity
- -
- 80% Identity
- -