Basic Information

Insect: Netelia melanura
Gene Symbol: RREB1
Assembly: GCA_964007305.1
Location: OZ023256.1:38823729-38829721[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0019 0.22 12.6 0.0 1 23 67 89 67 89 0.98

2 16 0.00019 0.022 15.8 0.3 1 23 103 125 103 125 0.98

3 16 9e-07 0.0001 23.1 1.2 1 23 131 154 131 154 0.98

4 16 0.057 6.6 8.0 0.1 1 23 250 274 250 274 0.94

5 16 4.2 4.9e+02 2.1 2.8 2 23 280 302 280 302 0.91

6 16 3.2 3.7e+02 2.5 0.3 1 19 358 376 358 378 0.89

7 16 0.075 8.8 7.6 0.1 1 23 493 515 493 515 0.96

8 16 3.2e-05 0.0037 18.2 0.3 1 23 524 546 524 546 0.98

9 16 0.002 0.24 12.5 2.9 1 23 552 575 552 575 0.97

10 16 0.00052 0.06 14.4 3.0 1 23 1043 1066 1043 1066 0.97

11 16 0.00074 0.086 13.9 0.1 3 23 1368 1388 1366 1388 0.97

12 16 0.66 77 4.6 6.0 1 23 1394 1417 1394 1417 0.97

13 16 0.021 2.4 9.4 1.8 1 23 1490 1514 1490 1514 0.95

14 16 0.61 71 4.7 3.1 1 23 1669 1692 1669 1692 0.96

15 16 0.013 1.5 10.1 0.4 2 23 1745 1766 1744 1766 0.94

16 16 1.5 1.7e+02 3.5 8.2 1 23 1772 1794 1772 1794 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0019	0.22	12.6	0.0	1	23	67	89	67	89	0.98
2	16	0.00019	0.022	15.8	0.3	1	23	103	125	103	125	0.98
3	16	9e-07	0.0001	23.1	1.2	1	23	131	154	131	154	0.98
4	16	0.057	6.6	8.0	0.1	1	23	250	274	250	274	0.94
5	16	4.2	4.9e+02	2.1	2.8	2	23	280	302	280	302	0.91
6	16	3.2	3.7e+02	2.5	0.3	1	19	358	376	358	378	0.89
7	16	0.075	8.8	7.6	0.1	1	23	493	515	493	515	0.96
8	16	3.2e-05	0.0037	18.2	0.3	1	23	524	546	524	546	0.98
9	16	0.002	0.24	12.5	2.9	1	23	552	575	552	575	0.97
10	16	0.00052	0.06	14.4	3.0	1	23	1043	1066	1043	1066	0.97
11	16	0.00074	0.086	13.9	0.1	3	23	1368	1388	1366	1388	0.97
12	16	0.66	77	4.6	6.0	1	23	1394	1417	1394	1417	0.97
13	16	0.021	2.4	9.4	1.8	1	23	1490	1514	1490	1514	0.95
14	16	0.61	71	4.7	3.1	1	23	1669	1692	1669	1692	0.96
15	16	0.013	1.5	10.1	0.4	2	23	1745	1766	1744	1766	0.94
16	16	1.5	1.7e+02	3.5	8.2	1	23	1772	1794	1772	1794	0.98

Sequence Information

Coding Sequence: ATGGACTCACCAATAATCGGTTCGTCCTTTTGCGTTACAGTGACGACAGTGACGGCAGCAGCAtcggcagcagcagcagcagcaggaaCGACACACGCCATCACAAAACACTCTGAACACAGATCAAATAATCGTCACAGTGGTGATACACAAGCGGATGCAGGAGCATCGTTGACATCGGATCAACAGGAAGCGGCTTATCCCTGTCCAGCCTGTTCGATAGTACTGACGACCTCGCGGGATCTAACGAATCATCTGCGCGGCCACAATTCACCACGGAGTACCGATTACAGCGGCGAAGACGATTATTCCTGCGGCGTTTGTCACAAGGTCTTGTCCTCGGCGAGTTCCCTCGACCGTCACGTACTAGTACATTCGGGCGAACGTCCCTTCAAGTGCAAATACTGCGAAATGGCGTTTACGACCAACGGTAACATGAACAGACACCTGAGAACGGCGCACGGTGGACTGTCGCCGCGCGAAAACGGTTACACGGATTCCGAAGCGAGCAGCGATTCGGAAAAGCCGGCCAAGAGACGCCACGTCGAGGAGTACAACAACAACGAGATCGCGAAAAGAGGCTCGCCCGATTTCATCGATCAGACCGAATCGCCGAGTTTCGTCGCGAAACGCAAGTGCCCCGATTTCACGGACGACAACGATAATCAAAGAAGACACAAGATTCTATTGAACAACTCGAGGACCGAGATAAAGGCCGGCGCGATCGAGACCCAAAAGGCACCGGTTCACAATTGTCCGGTATGCGGTAGATTGGACTTTGCGACGAGTGCCCTCCTCGAGGCCCATCTCGAGAGAAATCATCCCGAATTTCCAGCAAAGTGCGATCCCTGCAATCTCTCCTTCAAAAATCATCGCGTCCTCAATCTTCACAAATACATGAAGCACATCGCCGAGAATTCGTTCGTAAATAACGCAAGAAATCTACGAAATTCCGTCGTCGGCTTTCACGATCTGACTTTCGTTGATTTCTCGTCGGACAAGTTCCCGGCGATAGCCCGTGCGGTCTGCGAACAATCGTTGCACCGTCCCGCCTCGGGCGAGATCGCCAAGTTTCAATGCGGCAAGTGTCTTCGGGCTTTCCCGTGTCGATCGGCCCTCGACGCGCACGAGCTTGACTGTGGCACGAGCCATTCCCAGGCACGAGTCTACGTCGACGATCAGTCGAGGAGGGACGATTTCTTCGCCGGTCTCGATCTACAGAACAAAGCCGCCCTGAACGAGGCCAAGGAGGGAAAGGATCTCGCCGACATACAGAGCATTATATCGGTTACGTCGGGACCGATATTGCAAAACTTTCCGCGCTCGGACGCTAGCACACCCGAGCACCAGATCAAGATGAATCCGAACGTCGGCTCCTCCGGCTCGTCCGGCACACCCTCCTCCGAGTACCACCAGGAGGAAGAGGCGCAGGACGCGTTCGCCGCCGAATTTCGCAAGATGAAGCTCAAAGGCGAGTTCCCGTGTCGCCTGTGTACAGCGGTATTTCCAAATTTGCGAGCGCTCAAGGGCCATAATCGCGCTCACATGGGGGTTGGACCGGGTATGCCTTATCCGTGCAACATGTGTCCTTACACGAGCACCGACAAGGCAACCCTCGTCAGACACCTGCGATCTCACAACGGCGATCGTCCCTTCGAGTGTTCTCTGTGCAACTACGCCTTCACGACCAAAGCCAATTGCGAGAGGCACGTGAGAAATCGTCATGGAAAGCTGACGCGCGAGGATATTAAGAGCGTTCTCATTTATCATCCGAGCGAGGACTACACGAACGACGGCTCCCTCGACCGAGCGTCGCCGCGCGGCATTCGCGAGGACGCCCGCAAGACCCTCGTCTAtccgaacgagagagacgatTACGGGCAGAACGTTTATTCGGGATTGTCACTCGAGACGAAGCACGAGCTTGGCAACGTGTCGGACGATGGACAGATCCGCCCGATGTCGTTGCAGTCGCTTCGGGCGATGCAACTCGGACGTTACGACAAGTCCGATATTTTCTCGAGAATACCGAGTCACGCTGGAATTCATCCGTTGGAACTGAGCCACCGAATGAACGAGGAGGAGCAGGAtcgggaggaggaggacgaagaggaggaggagaggaggaggagcgATAAATCTCGGATCGAGAACGTGGCCCAGTCGGATTATAGTGGAAAGCACGAGGAGGACGGGGACGAGGAGGACGGGGAAGacggggaggaggaggaggacgaggcAAACTCGAGATCGTCGGAGGACGACGAGAGCGTCTCTCTAGTCAGCGATACCAAATCGGACGTTATTCACCAAAGAGTTCAAGCTAGTCCGATCGATCTGAAGAAAAGCGGAGCAGCGACGGCGGCGgcagcgacgacgacgataacgacgacgacggggaCAACAACGACGGTCCTTCCGGTCGGCCTCAAGCCCGGTGGGGCCTCAGCCGGGACCGAGGACGCGCCCCTCGATCTCTCCATGGACGTTCTCGATCTCAGCAAAAAATCTAAAGGGAACGCGATCCCGACGAGTTCACccgcggcggcggcggcggcggcggcggcggcgacgACCCCCGACGCCGAATTTGGCAGAAATCAGAAAGAATTTTACGACGCgacgaatcaatttttattgactCAGGCACTTCTGAAAGCCGGACAGGCAGGAAACCCAGCAACGTCTCTGGAAGCTCTCTATGCCAATGCCCACatgatttatcgaaatttcggAGGTTTCTCGGCCGCCGGTGTCGGAGCTGGTATATTACCGCCTTATCTCTTCAATCCTCACATGTTCGGACAAGACTTTGCGATGAAGGACAGACTGCAGAAGGAATTGGTCAGGGGTTTGCAACTGACGAGTGGCGGCACACTAGTCGAGCCACCGATCGGTAATACGGCATTCGCCGGTGCTTATCCACCCAGCAGAGACATACCGGTACATTCGATGGCCGAGCAGACCGATTACGCGAAACTCATGTCGTCGAAATTACCGACGAAGATGGTGAGCCCGCGGGAGAAAATGGACAATAGCCAATCGTCCAATTCCGTTAAAATGGTCATAAAGAACGGTGTTCTCATGCCAAAACAGAAGCAACGAAGATACAGAACCGAGAGACCGTTCACGTGCGAGCATTGCTCCGCGCGATTTACCCTCCGAAGCAACATGGAGAGGCACATCAAGCAACAGCATCCGCAACACTGGAGTCAAAGACCACGCGGTGGTCACTCGACCAGAGGACGACCACCCGCGAATCCACCGACTCTTCTTCACAATGCCAATCATCACACGAGCCAACAGTTGGCGCAATCTTATCCGAATATTTTGCCCAAGATCGGGCAATCCACGACCAGTTTAAATTACGAGAAACATTCCATCTCCGATCAGGTAAAGTACGCGATACTGGCTCAACAGCTCAAGGGTAGCAAGATCGAGGAGAACGATACCGAGGAAGAGTTGGTGATCGACGAGGCCGCTCAGGAAATGGAAATCCACGAGAACGAGCACGACGACGCGCAACGATCCACGAGTCTCCTCAGAGGAAAACTCGAGGGCAACGATTTGTACAGAGATGTCGCGGCGAGACAGCAAAAAGCGTCGgagatgattaaaaaaaattctgccAAGGTGGAGGAAGAGAGCGCAGACCGGGCGGAGATGGCGAAAACGACTGAGAAAAATTATCGTGATACGATCGACGTGAAGATCGAACCCGAGGAGCAGCGCGACGAGGACATGAAGGATTGCGTGCCGAGCGAGCTCTGCGTCGCGGAAATTACCAAGATCGAGCAATCATCCTCCCGAGACGGTATGAGCGAGAAGAACGAGGACGCCACTGCCGATCTAGCCAGTGTCTCGGAATTACTGGACAACGCCTCGCAGCAGTATCAACAATTTCAGCCTCAGTACATGAGCGACGAGGAGGGCCTCGTTGCCTCGACGAGCGATTGCAATAATTCTGGAAGCGACGAAAAATCCGATTCCGTAAATTCGGCCAATTCCACCAACTCCACGTCgtccaagaagaagaagaagaagaagaagaagatgaaaaaaaagaaatccgcGTACTCGATGGCACCTAACCGGGTCATATGTCCGTATTGCGAGAGACCGTTTCCCTGGACCTCCTCGCTCAGACGACACATTCTCACACACACGGGACAAAAGCCCTATCAGTGTGTGCACTGTTCCCTCCTCTTTACTACAAAATCCAACTGCGATCGTCACCTACTgagaaaacacaaaaacaacgCGAATAAGATTCGTCGTTTGAGAAATTCTTCATCCCCCGATACTCGGGAGCGACTttccaacaacaacaataacagtagtaacaataacaacaacaacagcaacaacaacaacaacaacaacaacagcagcagcaataacaacaacaacaacaacaacaatagcGCGAGCAGCACGTTCGCCATGAGGAACGTGCCCGAAAGGCCGTACAAGTGTAATCTATGCCCTAGCTCGACCTTCTCGACACTGGGTAATCTGAAGAAGCACAAATCCTCGAAGCACTCGAGGGGTACAAAATCACGTCCGGAATCACCGGTAACGAGCGAGCCGCAAAACAGCCCAATGACTTGCAACAAACAGAATGATCAGAGCGGCTACGAGAGTCAGTCGTCCAGTATCTCCGAGAATATGGACCACCACGTGGATAAAATGGAAACTGTTGAAAATAGCGAGGTGAGTTGCGCGAATACTACGACCGAGACGAGGGTCAAGGTGGAACCTGCCGAGAACGTTGATTCGACGGAATCGTGCGAAATCCCGGGGGATAAGGAGAATTCGGAAACGATGGAGCAGGAAGACGGAGAAAATGCGGAAAACGCCGAAATACCGGATAGCTCAATGTCGTTGGAGAATGCACCGACCAAGAGCAACGAAGCCAGCCTACCGACGACAGCGACGACGAACGAGGCATCGAAATCTCGACGACCGTCGCCGCGTTCGTCCCCTGGCCCGACCGACGCACCCTTCAAGTGTCATCTGTGCGACAGCGGATTTTCCGAGCGTCAAGATTGCCTCGAACACATAAGAATCAATCACACGAGATCCTACGAGATTCTCGTTGCGAAAGGTGCTCTCGACATGGACATCGAGACTCCGGaggaacaacaacaaccaccaTCGTCGTTGCAACAACATCTGAGCGACGGAGAGGAAAAACGCGGCAGATTTCCCGACTACAGTAATAGAAAGGTCGTCTGTGCATTCTGCATGCGTCGCTTCTGGTCCGCGGAGGATCTTCGTCGACACATGAGAACTCACACGGGCGAAAGACCGTTTTCCTGCGACATATGCTGTCGGCGTTTCACCCTGAAGCACAGTATGCTCCGACATCGGAAGAAGCACGAATCCGTCGATTCGATGATGTACGTGGGTACGAGCGGTGACGAGGAATCCGCACCGTCCCAGCCACCGACGATAACACCCCGCAgtcagcaacagcagcaacaggcATCGATGCTCACTACTACGAGCTGCGACTCGAGGATACAGGAAAGAGTATCTCTGCCGACGGTCGCGACTGTCGCGACTGGCGACGCGGCACCCAGTGCCCTCATGAGGTTCAATCCttacgaaaaattaacgacCCTCACGGGAAAATTGGCCAATGCTCAGCACAGTTTTCACGCGACCGAGGGTCCTGACACGGAAAACGATCTCATCTCGAATCTTCTTGGGATTCGCGACAAGAGCATAATCGACAAGGTACTTCAAGCATCGGCCGATGACGCTGCTAAGCTTCTCGGTGTCAATAGAAATCACGATTAA
Protein Sequence: MDSPIIGSSFCVTVTTVTAAASAAAAAAGTTHAITKHSEHRSNNRHSGDTQADAGASLTSDQQEAAYPCPACSIVLTTSRDLTNHLRGHNSPRSTDYSGEDDYSCGVCHKVLSSASSLDRHVLVHSGERPFKCKYCEMAFTTNGNMNRHLRTAHGGLSPRENGYTDSEASSDSEKPAKRRHVEEYNNNEIAKRGSPDFIDQTESPSFVAKRKCPDFTDDNDNQRRHKILLNNSRTEIKAGAIETQKAPVHNCPVCGRLDFATSALLEAHLERNHPEFPAKCDPCNLSFKNHRVLNLHKYMKHIAENSFVNNARNLRNSVVGFHDLTFVDFSSDKFPAIARAVCEQSLHRPASGEIAKFQCGKCLRAFPCRSALDAHELDCGTSHSQARVYVDDQSRRDDFFAGLDLQNKAALNEAKEGKDLADIQSIISVTSGPILQNFPRSDASTPEHQIKMNPNVGSSGSSGTPSSEYHQEEEAQDAFAAEFRKMKLKGEFPCRLCTAVFPNLRALKGHNRAHMGVGPGMPYPCNMCPYTSTDKATLVRHLRSHNGDRPFECSLCNYAFTTKANCERHVRNRHGKLTREDIKSVLIYHPSEDYTNDGSLDRASPRGIREDARKTLVYPNERDDYGQNVYSGLSLETKHELGNVSDDGQIRPMSLQSLRAMQLGRYDKSDIFSRIPSHAGIHPLELSHRMNEEEQDREEEDEEEEERRRSDKSRIENVAQSDYSGKHEEDGDEEDGEDGEEEEDEANSRSSEDDESVSLVSDTKSDVIHQRVQASPIDLKKSGAATAAAATTTITTTTGTTTTVLPVGLKPGGASAGTEDAPLDLSMDVLDLSKKSKGNAIPTSSPAAAAAAAAAATTPDAEFGRNQKEFYDATNQFLLTQALLKAGQAGNPATSLEALYANAHMIYRNFGGFSAAGVGAGILPPYLFNPHMFGQDFAMKDRLQKELVRGLQLTSGGTLVEPPIGNTAFAGAYPPSRDIPVHSMAEQTDYAKLMSSKLPTKMVSPREKMDNSQSSNSVKMVIKNGVLMPKQKQRRYRTERPFTCEHCSARFTLRSNMERHIKQQHPQHWSQRPRGGHSTRGRPPANPPTLLHNANHHTSQQLAQSYPNILPKIGQSTTSLNYEKHSISDQVKYAILAQQLKGSKIEENDTEEELVIDEAAQEMEIHENEHDDAQRSTSLLRGKLEGNDLYRDVAARQQKASEMIKKNSAKVEEESADRAEMAKTTEKNYRDTIDVKIEPEEQRDEDMKDCVPSELCVAEITKIEQSSSRDGMSEKNEDATADLASVSELLDNASQQYQQFQPQYMSDEEGLVASTSDCNNSGSDEKSDSVNSANSTNSTSSKKKKKKKKKMKKKKSAYSMAPNRVICPYCERPFPWTSSLRRHILTHTGQKPYQCVHCSLLFTTKSNCDRHLLRKHKNNANKIRRLRNSSSPDTRERLSNNNNNSSNNNNNNSNNNNNNNNSSSNNNNNNNNNSASSTFAMRNVPERPYKCNLCPSSTFSTLGNLKKHKSSKHSRGTKSRPESPVTSEPQNSPMTCNKQNDQSGYESQSSSISENMDHHVDKMETVENSEVSCANTTTETRVKVEPAENVDSTESCEIPGDKENSETMEQEDGENAENAEIPDSSMSLENAPTKSNEASLPTTATTNEASKSRRPSPRSSPGPTDAPFKCHLCDSGFSERQDCLEHIRINHTRSYEILVAKGALDMDIETPEEQQQPPSSLQQHLSDGEEKRGRFPDYSNRKVVCAFCMRRFWSAEDLRRHMRTHTGERPFSCDICCRRFTLKHSMLRHRKKHESVDSMMYVGTSGDEESAPSQPPTITPRSQQQQQQASMLTTTSCDSRIQERVSLPTVATVATGDAAPSALMRFNPYEKLTTLTGKLANAQHSFHATEGPDTENDLISNLLGIRDKSIIDKVLQASADDAAKLLGVNRNHD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01057144;
90% Identity: iTF_01057144; iTF_01057880;
80% Identity: -