Basic Information

Insect: Netelia melanura
Gene Symbol: ham
Assembly: GCA_964007305.1
Location: OZ023259.1:13862243-13897047[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.039 4.5 8.5 0.0 2 13 335 346 334 357 0.80

2 9 0.24 28 6.0 0.9 1 23 364 387 364 387 0.94

3 9 0.00012 0.014 16.4 0.7 1 23 393 421 393 421 0.94

4 9 5.7e-06 0.00067 20.6 2.6 1 23 427 449 427 449 0.95

5 9 3.5e-05 0.0041 18.1 5.0 1 23 455 477 455 477 0.99

6 9 0.00025 0.03 15.4 0.7 2 21 485 504 484 505 0.95

7 9 1.1e-09 1.3e-07 32.2 1.2 1 23 908 930 908 930 0.99

8 9 1.2e-07 1.4e-05 25.8 1.7 1 23 936 959 936 959 0.97

9 9 1.2e-05 0.0014 19.5 3.4 1 23 965 987 965 987 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.039	4.5	8.5	0.0	2	13	335	346	334	357	0.80
2	9	0.24	28	6.0	0.9	1	23	364	387	364	387	0.94
3	9	0.00012	0.014	16.4	0.7	1	23	393	421	393	421	0.94
4	9	5.7e-06	0.00067	20.6	2.6	1	23	427	449	427	449	0.95
5	9	3.5e-05	0.0041	18.1	5.0	1	23	455	477	455	477	0.99
6	9	0.00025	0.03	15.4	0.7	2	21	485	504	484	505	0.95
7	9	1.1e-09	1.3e-07	32.2	1.2	1	23	908	930	908	930	0.99
8	9	1.2e-07	1.4e-05	25.8	1.7	1	23	936	959	936	959	0.97
9	9	1.2e-05	0.0014	19.5	3.4	1	23	965	987	965	987	0.99

Sequence Information

Coding Sequence: ATGGAGTGTCTCGATCTGACGAAACCGATGGCGGATTACGATAGTAGCGGAAGCAGCGACGAAGGCGAAACGACAGGCATCATGGGTGGCGGCGAAGTAACGGGCGACGGAGGTGGGGGCGAATTTAGTGGTGGGGGTGGTGAGAACGACAGCGCCAGTGGCGGTGGCGTCGCGAACGAGAACGCGGAAATGGAGGACAATTCCGCGCGCTCGTGCAACATGAACAATCCAACGTTTCACGATGTCAATCCGCTGTTGCACGGTAGTGGCGTCAACGACACGACGCTTCATCGCCAAGAATATCATCGAAGAAACAACGAGCTGGGCGTCTTTCTCGATCTGACGCCAACGATGGAACGACAGCCGACTCACGAGAGTGAAAGACATCAGGCTGGCGATGGCGTCAGTCATGCGAGGGAACGTAACGACGAAAGGAGATCTTGGGAGTTCAGTGAAAATCAAATATGCACACCCTCTTACAGAATCGATTATCAGGAAACGATaaaatcgagagaaacgaaagaagagtCGAGTGGTGAGTGGATATCACCGGTACCGGAAGTCGAAGTCGGTGGTTCAGCACCCCGAGGTCCTCAGGTTCGCGCCAGGAAGGACATCCCTCGTGGCGCCCGATTCGGACCGTTTCTTGGCAAGTGGGCGAGCCACCCTTTCAATCCTCGTTACGCGTGGGAGGTTTACGTGGCCGGCAGTGGTATAAGGGGATGGCTCGACGCGTCGCACGAGGCGGGAAATTGGCTCAAGTACATCAGAAGTACAACGAATCCACACGCAGTCAATATGCGTCACGTGCTCATCGGTGGCCAGATGATCTACGAAGCAGTGAGGGACATCAGTGCAGGCGAGGAATTGTTACTCGGTGTCCGAGAGCCTCTTCAGCTTCAGGACATGCTCGGCGAGAACACGACCGAGGACAGGAGTGATCGAGAGACCGCTTCTCAGCACAGTGGAACGATCGACGACGAGGAGATCGAGAAGGAGATACGTTGTCCCGGCTGCGACAGATCATTCCGGCAGATAGAAATACTGGACGATCATCTAGTGGCGAGGCATTGTTATGAAGCGCATCAGTATCCTTGCAACTCCTGTCGAAGAAGTTACTCCTGGCATCCACTTCTCGAGCGCCATCGTGCGATAAAACACGCCGATCTACGAAAATACACGTGCGAAAATTGTCCAAAGTCTCAAACCCCGCAGGTCTTCACGGACCCGTCGAATCTACAGCGTCATATAAGAGATCGTCACGTTGGTGCGCGTAGTCACGCGTGTACCGAATGCGGCAAGACATTCGCAACGAGCTCGGGTCTGAAGCAGCATACCCACATACATAGCAGCATCAAGCCATTTCAGTGCGAAGTTTGTTTCAAAGCGTACACTCAATTCTCAAATTTGTGCCGTCACAAGCGTATGCACTCGAACTGTCGTATGCAAATCAAGTGCGTCAAATGCGGCCAATCGTTCAGCACCGTAACGTCACTAACGAAGCACAAACGTTTCTGTGACTCATCGAGCGGTTGTCGACCACCGACCGGACCAATGCCGCAATTACCGCCATCGGACCCGAGTCCTTTCCTGGTTTTTCAACGACCACCCACTTCGTTATCCGGCTGCTTACCATTTTATTCACATTATCCTGGAGTGTTTGGAAACGGCCCGAATGTTCTCCACGCTCCTTTGCTATTCTCGCCTAGATTCCCCCagccgcagcagcagcaacagcagcagcagcaacaacaacaacaacagcaacaacagcaacagcaacagcaacaacaacatcaTCAGCAACAGTcaaagcagcagcagcagcatcagGAGCCACCGGACCAGCCAGAAAAGAGAAGCGAGAGCccaaagaaagagagattcaCACCACCAAGATTATTGCCACAACACAACAAGGTATCGCCATCCACAGCCGAAGAAGCGACATCGACGTTCAGACCATCGCCAGCGAGACCACCGCTTCAAACTACGACGGACACCGACGAGGAAACCACCAGAAGACGGGAGAATCCacagagaaacgagagaatgacGATTTTATCCACGGAATGTACGACATCGTCGTCGAACGAGGAGACGACCGATCAACCGTTGGATCTACGAGTTCAAACGAAGAGACAGGATCAGGAGACACTTCAATCGTCGGAATTGACTCTCGAGCCAACGAGTGGCAGTAATTCACCGGCGACGATCGTGATGGAGGAAAACATCGTCGATACGTCGAAACATTCGGAGGACGAGGAGATGCCTATGGAGATAAGTGAGGCGAAGGAAATTTCGAGCCCTCAGTTACGTACAAGCTCGTCGCAGGAACAAAGTGCAGCGAGTACACCACCTTACATGGCTTATCCGAGGCCCATTCATCCTCAGGCGCAAGCTATGTTTCTTGAGGCGATGTATCGCAATACCGGAGGTTCGGGCTTTCCAGGATTTCCAGGTGGACCGACCGCGCCACCGGGATGTTCGCCGGAATCTCGACTCTTACCGCCACTACCACCGTTCGGACCCCCACGAGCGCTTCCCTTTTTAGGAAACATCATGAACGGGCTCAGTGGCACTAGACCCGGCGGTGGCTTCGATCTACTCACCAGACCGCCGATGGGCTCGTTCCAAGGCGTAAAACCGTTTCAGGACGCTGTCATatctcatcatcatcatcatcatcatcatcatcaaccGGGCAAAATGAAGGACCGTTACACCTGCAAATATTGCGGCAAAGTCTTTCCACGCTCGGCCAATCTCACGCGTCATCTTCGCACTCACACAGGCGAACAACCCTACAAGTGCAAATATTGCGACAGATCTTTCAGTATCTCGAGCAATTTGCAGCGTCACGTTAGAAATATCCACGACAAACAGAGACCCTTCAAGTGTCCTTTGTGCGAACGTTGCTTCGGACAACAGACGAATCTCGACAGACATCTGAAGAAACACGAGGCCGACGATGGCAGTGGTGTCGTGTCGGTTGCCGATTCGCCCGGTAGTAGTAACGAGAACGAACGCGAGGATGCTTATTTCGATGAGATAAGATCGTTCATGGGAAAAGTTACGTACGGCGGTGATTCCGCGGTTTACGGCCTCGAACGACACAGTCGTCCGACTTATTGCACAATGCCTGAGCGTCTCAGACTTGGCGAGGAGTCCGACGTCAGCGAGGAGGATGTCTCACCTCTCGAGGAAACCGACGTATTGTCCCCCATAGAGACCAAAGGATCGCCACCACCGACGCAGTACGAATTGGAATTCAGGGACAAGCCCGAATTGCTCAACAACAATACGGCATCGCCGGTTATCGAGATCTCGACATAG
Protein Sequence: MECLDLTKPMADYDSSGSSDEGETTGIMGGGEVTGDGGGGEFSGGGGENDSASGGGVANENAEMEDNSARSCNMNNPTFHDVNPLLHGSGVNDTTLHRQEYHRRNNELGVFLDLTPTMERQPTHESERHQAGDGVSHARERNDERRSWEFSENQICTPSYRIDYQETIKSRETKEESSGEWISPVPEVEVGGSAPRGPQVRARKDIPRGARFGPFLGKWASHPFNPRYAWEVYVAGSGIRGWLDASHEAGNWLKYIRSTTNPHAVNMRHVLIGGQMIYEAVRDISAGEELLLGVREPLQLQDMLGENTTEDRSDRETASQHSGTIDDEEIEKEIRCPGCDRSFRQIEILDDHLVARHCYEAHQYPCNSCRRSYSWHPLLERHRAIKHADLRKYTCENCPKSQTPQVFTDPSNLQRHIRDRHVGARSHACTECGKTFATSSGLKQHTHIHSSIKPFQCEVCFKAYTQFSNLCRHKRMHSNCRMQIKCVKCGQSFSTVTSLTKHKRFCDSSSGCRPPTGPMPQLPPSDPSPFLVFQRPPTSLSGCLPFYSHYPGVFGNGPNVLHAPLLFSPRFPQPQQQQQQQQQQQQQQQQQQQQQQQQHHQQQSKQQQQHQEPPDQPEKRSESPKKERFTPPRLLPQHNKVSPSTAEEATSTFRPSPARPPLQTTTDTDEETTRRRENPQRNERMTILSTECTTSSSNEETTDQPLDLRVQTKRQDQETLQSSELTLEPTSGSNSPATIVMEENIVDTSKHSEDEEMPMEISEAKEISSPQLRTSSSQEQSAASTPPYMAYPRPIHPQAQAMFLEAMYRNTGGSGFPGFPGGPTAPPGCSPESRLLPPLPPFGPPRALPFLGNIMNGLSGTRPGGGFDLLTRPPMGSFQGVKPFQDAVISHHHHHHHHHQPGKMKDRYTCKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCDRSFSISSNLQRHVRNIHDKQRPFKCPLCERCFGQQTNLDRHLKKHEADDGSGVVSVADSPGSSNENEREDAYFDEIRSFMGKVTYGGDSAVYGLERHSRPTYCTMPERLRLGEESDVSEEDVSPLEETDVLSPIETKGSPPPTQYELEFRDKPELLNNNTASPVIEIST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01057091;
90% Identity: iTF_01057091;
80% Identity: -