Basic Information

Insect: Netelia melanura
Gene Symbol: -
Assembly: GCA_964007305.1
Location: OZ023254.1:29137360-29141021[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.097 11 7.3 2.1 2 20 303 321 302 323 0.93

2 14 1.1 1.3e+02 3.9 2.7 3 23 365 386 364 386 0.90

3 14 5.1e-05 0.006 17.6 2.7 1 23 392 414 392 414 0.98

4 14 4.6e-06 0.00054 20.9 2.6 1 23 420 442 420 442 0.96

5 14 0.0014 0.17 13.0 6.0 1 23 451 473 451 473 0.97

6 14 2.1e-06 0.00024 22.0 0.8 1 23 479 501 479 501 0.98

7 14 1.5e-05 0.0017 19.3 1.0 1 23 506 528 506 528 0.96

8 14 0.032 3.7 8.8 1.7 1 23 535 557 535 557 0.98

9 14 0.0081 0.94 10.7 0.3 2 23 577 598 576 598 0.97

10 14 7.4e-05 0.0086 17.1 2.0 2 23 606 628 605 628 0.96

11 14 0.00099 0.11 13.5 0.3 1 23 634 656 634 656 0.97

12 14 0.00066 0.077 14.1 4.4 1 23 662 684 662 684 0.99

13 14 6.4e-07 7.4e-05 23.6 1.7 1 23 690 712 690 712 0.97

14 14 4.8e-06 0.00055 20.8 1.8 1 23 718 740 718 740 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.097	11	7.3	2.1	2	20	303	321	302	323	0.93
2	14	1.1	1.3e+02	3.9	2.7	3	23	365	386	364	386	0.90
3	14	5.1e-05	0.006	17.6	2.7	1	23	392	414	392	414	0.98
4	14	4.6e-06	0.00054	20.9	2.6	1	23	420	442	420	442	0.96
5	14	0.0014	0.17	13.0	6.0	1	23	451	473	451	473	0.97
6	14	2.1e-06	0.00024	22.0	0.8	1	23	479	501	479	501	0.98
7	14	1.5e-05	0.0017	19.3	1.0	1	23	506	528	506	528	0.96
8	14	0.032	3.7	8.8	1.7	1	23	535	557	535	557	0.98
9	14	0.0081	0.94	10.7	0.3	2	23	577	598	576	598	0.97
10	14	7.4e-05	0.0086	17.1	2.0	2	23	606	628	605	628	0.96
11	14	0.00099	0.11	13.5	0.3	1	23	634	656	634	656	0.97
12	14	0.00066	0.077	14.1	4.4	1	23	662	684	662	684	0.99
13	14	6.4e-07	7.4e-05	23.6	1.7	1	23	690	712	690	712	0.97
14	14	4.8e-06	0.00055	20.8	1.8	1	23	718	740	718	740	0.99

Sequence Information

Coding Sequence: ATGGAGCCTGTTTCACTGGCAGAATGTATAAACATTGTCAACCAAGACAGTCCATCTCGGGATATAAACCACGAAGTTAGATTCGGCTACCAAGAGGAAAGTTTTAACCACAATGAAAGGGTTAATACAGCTAATGTTCTAACTTTATGCAACATGCACCCAACCATTGATCATTTTGAAGGAATATCCGTTGGATTAACCAATATATGCCGTATGTGTGGTAATCCCATTTCCAATGGAATGGATATTTTCACTAAGAAAGCAATTGGTTTGAGGttgaaggaaaaaattgaattacatgcatcaatatcgataaatcCAGAAGATGCATTACCACAGAAAATATGTACCAActgtttcgaaaaattggaaacCACTCATTCAATGGTTGTTACATGTTTACAGACTGATTTGAGACtcagaaaaattctcaatattACTAGCAAACCGCCGGTTTATGACTCTAAATACTCACAATTAATGACTATGAACATCATAGATAAGGCTAATCGAACAAGTTTGGGGAGAATTGATGAGTACGATAGTAGATCTGacaacattgaaaaaaatgcacataTCAACAGATTCGATTGCAAATGGAAGGATACCTCTTCCAATATTGATATGAAACAAATTGAGTCATGTCTAATCGGTGAAACGAGTGGTGATAATGCCTCTGTCTTAAATCATATTGAACACTCTAATTTAAACATCTTGCTTCAAGTGCTCGAAGGGACAAGTCCTAAGACCGATGAAAGCAAAACTCTGGAAATTCCCATCATTGTGAATGCCGCAAACTGTGACAATCCTTTCGAGACTGAGGGCATGTTTGAAAATCATAGAACCATGTGTAATTCCGACGATCTGACAGAACAAGGAGACAACAGCAAATTCCAATCGAGCGTAACTTGTTCTGTTTGCAGCAGTTCGTTCGCTAATAAGAAATGTTACGAAAGGCATAAGAGTTCATGTGATGTAAATCACTTTCAATGCGAAAATAGAGGAATATTGTTAAAACATGATAAAACTAATCCGAATATTGGAGATATGATGCACAAAGAAAAATCGCATTCTATAGAATCAAATAGACTATGTGGATATTGTCCGTCTTTATTCAAAACTCACAAGGAACTGCATACCCACGTTACTGATAGCCACAATGGTTTGCCAGTATTCAAGTGCAGTATGTGCGAAAAAAGTTATGAGAAATGGTCAAGTCTATGTGTTCATAAGGCTACTCACAGAAACGACAAACCTTATCTGTGCGATCTTTGTGGAAAAAGTTTCAAGCATTCAAACAATTTAAGGGGTCACAAAAGAATTCACTTAGATgatgcaaaaaagaaacgtcacGTTTGTGACATTTGCAATAGTGCGTTTAGATCGAGATTCCATCTTTGTGAACACATGAATCAGCATAATGGTAATAGGCCGTACAATTGCGAAGAGTGCGGCAAAGCTTTTTCCAAAAGAATACAGCTGCGACAACATCGATTATCTCATGGGTCCAAAAAACATGCATGTCCAGTTTGTGGTGTTACATTCAATCGCCGAGGTAATATGAGTACCCATCTTAAGAGGCACAACCAAAACGAGGGAATGTATACTTGCAGTGTGTGCAACTCCAAATGGGATTCAATGAGTGAGTTGAAAAGgcatcgaaaaaaacattccgagaatgaaataattgaGAGTATCAAGATGGGAACCGCTGACAGAACGGTGTGGCAATGCTCGATATGCGTCAAGATTTTCCCAAAGCGTACTATTCTATTGAAACACGAACGGACTCATAACGGTGATCATACAAGCGTCGAGTGCGAGaaatgtggaaaaaaattagCGAACAAAAGTTCATTGAATCATCACAACAAGACGTTACACTCGACCCAAAGATCGCACATGTGTCAATTTTGTGGTGAAGCGTTCGTCTTGAGAGAATCGCTTCTTATACATGAAAGAATTCATACGGGACAACGTCCTTATACGTGCAAAATTTGCAATACGCAGTACAGATGCTCGAGTAATCTCAGCCAACacatgaaaattcatttatccGTAAGACCGCATGTTTGTCAATACTGCAACAAAACGTTCACACGCAAGGGTGCACTGAACGTTCACGAAAGAATTCACACAGGATTCAAGCCGTTCACTTGTAACATATGCAGTCGTGcgttttcacaaaaaaatgacaTGATAAAACATACGAAGACTCATCCGGAGAAGACCCTGCAGGATGAAAAATGCGACGAGTCTGTGGAGACCAAGCGCTCGATATGTACCGAAACATCTGTATCTTCGCAAGACGAATGCTGTTGA
Protein Sequence: MEPVSLAECINIVNQDSPSRDINHEVRFGYQEESFNHNERVNTANVLTLCNMHPTIDHFEGISVGLTNICRMCGNPISNGMDIFTKKAIGLRLKEKIELHASISINPEDALPQKICTNCFEKLETTHSMVVTCLQTDLRLRKILNITSKPPVYDSKYSQLMTMNIIDKANRTSLGRIDEYDSRSDNIEKNAHINRFDCKWKDTSSNIDMKQIESCLIGETSGDNASVLNHIEHSNLNILLQVLEGTSPKTDESKTLEIPIIVNAANCDNPFETEGMFENHRTMCNSDDLTEQGDNSKFQSSVTCSVCSSSFANKKCYERHKSSCDVNHFQCENRGILLKHDKTNPNIGDMMHKEKSHSIESNRLCGYCPSLFKTHKELHTHVTDSHNGLPVFKCSMCEKSYEKWSSLCVHKATHRNDKPYLCDLCGKSFKHSNNLRGHKRIHLDDAKKKRHVCDICNSAFRSRFHLCEHMNQHNGNRPYNCEECGKAFSKRIQLRQHRLSHGSKKHACPVCGVTFNRRGNMSTHLKRHNQNEGMYTCSVCNSKWDSMSELKRHRKKHSENEIIESIKMGTADRTVWQCSICVKIFPKRTILLKHERTHNGDHTSVECEKCGKKLANKSSLNHHNKTLHSTQRSHMCQFCGEAFVLRESLLIHERIHTGQRPYTCKICNTQYRCSSNLSQHMKIHLSVRPHVCQYCNKTFTRKGALNVHERIHTGFKPFTCNICSRAFSQKNDMIKHTKTHPEKTLQDEKCDESVETKRSICTETSVSSQDECC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01057081;
90% Identity: -
80% Identity: -