Nmel014899.1
Basic Information
- Insect
- Netelia melanura
- Gene Symbol
- ken
- Assembly
- GCA_964007305.1
- Location
- OZ023257.1:2890106-2893337[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0011 0.13 13.4 0.7 2 23 288 309 287 309 0.95 2 17 1.5e-05 0.0018 19.2 1.6 1 23 319 341 319 341 0.99 3 17 3.4e-06 0.0004 21.3 0.9 1 23 347 370 347 370 0.95 4 17 0.0027 0.31 12.2 1.4 1 23 376 398 376 398 0.98 5 17 0.00065 0.075 14.1 3.1 1 23 404 426 404 426 0.96 6 17 0.0061 0.71 11.0 1.8 1 23 432 454 432 454 0.95 7 17 0.00028 0.033 15.2 1.8 1 23 460 482 460 482 0.98 8 17 9.6e-06 0.0011 19.9 1.1 1 23 488 511 488 511 0.97 9 17 0.16 19 6.6 0.2 6 18 578 590 576 590 0.91 10 17 0.0033 0.38 11.9 4.1 1 23 633 655 633 656 0.95 11 17 0.00014 0.016 16.2 2.5 1 23 688 710 688 710 0.98 12 17 1.3e-05 0.0015 19.5 1.6 1 23 716 739 716 739 0.97 13 17 6.5e-05 0.0076 17.2 1.1 1 23 745 767 745 767 0.98 14 17 7.1e-07 8.2e-05 23.4 0.6 1 23 773 795 773 795 0.98 15 17 6.3e-05 0.0073 17.3 0.2 1 23 801 823 801 823 0.97 16 17 1.1e-05 0.0012 19.7 1.7 1 23 829 851 829 851 0.97 17 17 2.7e-05 0.0031 18.5 0.8 2 23 858 880 857 880 0.96
Sequence Information
- Coding Sequence
- ATGGCGGCGAAAGGAACCGCAATTTCGAATGCGCCCGAAAATAATTCTCCCGAACAATATATAGAATATGATATCGAGGAGAAGCCTCAAGTTTCCATCGATGCTGACGAACAAACTGAGGCGACCGAACAATTCTTTAACTGGTCACAGATTTGTAGAGTCTGTGCCAATACCAATGATCACATTATACCCATATTCGAGGCTGAGGGAGCGGAGCATGATTTGATCAACAAAATTCACAAGTATCTGCCAATTCAGGTTTCCAAAACCGACACTTTACCTCTGCAACTGTGCTATCATTGCGCAGCTACGATACTTGCGTGGCATGAACTTCTCGAAGGCTGCTTGGATGCGGAGAAACAACTTTTGGAGATGCAAGTTGAACAAAGCGAAAAGCAGCAATTAGAAACAAAACTCAGTGAAAATCTCAACGAGGAACAAATTGATGATCCGGAACAAGCAGTCATGGAGCAACAGGAAGAAGACCCGACGGAGCATGCCAGTATTGGCGAGAAGCCAACGAAAAGGTCGGATAGAGCGGAGGAGACATTTAAAGTATTCCTTGAAGCACTCAATATATGTCGAAGAACGAGAAGATCGACAGTCCCAGTTAACGACGAAAAACCTAtggaaatgcaaaaaatagGCGATTTTTCCCCAAGCGGAATAAGACCAAACTTACAAGCATTGCTGGATGAAAATCCAGACCGTCCAATTGAAAAGACTGCGAGGAAAACCCCaaggaagaacaaaaaacgtaaaaaatctCCACTCTCAAAATCCGATACGCAATACGAAGAGACAATAAATCACGACGATGATACGAGTCCGGACGAGGACGATGAAAAGAACGTCAGGGTAAAATGCAACGTCTGTTCTCGTGAGTTTTCTCACATAAAGGAACTTCGCGTCCACGTCGAAGAACACAAAAACATTCCAGCGGCCAGAAACCCTTATAAATGCGACGAGTGTTCCAAGGACTTTCGCCTCAAGGACTCGTACCTTCGTCATCTGAGAATTCATCGAGACGAGCGACCGTTCACGTGTCACGTCTGCGGTAAACAATTTCGGGACTCCGGCGGTCTTTCACGACACGTGAAAGACGTTCATgcaaaactgaaaaatttctCCTGCGACATCTGCAGCAATAGCTTCTCGTCCAAGGCAACGCGCGACGATCATCGACGCACTCACACGGGCGAGAGACCCTATGCTTGCGACAATTGCAACAAGTCGTTCAAATCACGTGCCTGCCTCTACATTCACAGTAAACTCCATACCGACGAATTTCCTTATCCTTGCATACATTGCGAGAAGAAGTTTCGTCGCAGACAAGAGATGCTCGTTCACGTATCGACTCACACCGGCGAGAAGAATTACAGCTGCGACGTTTGTTCCCGACGTTTTCGGGTGAAGAACGAAGTCAAGAGGCATAAGCTTACGCACTCCGATGAGAAACCTTACGTTTGCGCCAAGTGCGGTCTGAGCTTTCGACAAAATCGTTATCTCAACAATCACGTGAAATCGAGACACTCGCAatCGAGCAAAACGGGAGAGACAAAATTTggcaattttcttaaaaaagaaacagaggaGTTGGTGGAAAGCGTAACGAGGCGCACGACGAGACTCTCCCGCAGAGGCCAACGAGAATTTCCATGTAAGAACGACGAGTATTCTTCGAACGAGAGAAGCAAACTGCGAAAAAAGACCCAGAGCTCGTCCGAGAGATGTTCGAGAGTTTTCAAGAGAGCGAGTAATTTGAAGAAACCTGGGCAGAAGGAAGAACCGAAGAAGACGATAAAGCTGAAGCACGAGGATAACGATAAGGAAGTGCCTAAACAATCGAGTTCGTGGAATGATCTCGACACTTCCCACAAAGGACGAAAATCTAATTATCCCTGTCTGTACTGTGATTACACagcgacaaagaaaaaacacctGGAACTTCATACCCGCGAGCATCACGAGGGAAATTCGATTCTGGACAAGAAGCAAAAGCGAGACGTCGACAATGATCTAGTAACACGTGCGAGGATGGAAGCAAACGGCCGGGTGTATTATCACTGCGACGATTGTGGCAAAAATCTCTTCTCGCCTTACACCTTCTTCTCGCACATGAGAATTCACACCGGCGAGCGACCTTTCACTTGCCACTTATGCGGCAAACAATTCCGGGTCAATCAGGGTCTGGCTCGTCATCTTCGAGAGACTCACGCcggtataaaaaatttctcttgCGATATTTGCAGTCGCATGTTCTCGACGAAACGTAACGTGGACGATCATCGACGCATCCACACTGGTGAACGTCCTTTCGTCTGCAACGTATGCGGCAAAGCTTTCAAACAAAAAGCCTCGCTGTTCGTTCACAACCGCTCGCACACGGATTCGTTTCCATTCAAGTGTAACTATTGCGGACAAGGCTTTCGCACCAGGCCACCACTCATTCTTCATCTGACAATACACACCGGTGAAAAGCCTCACACTTGCGACATATGCGATCGTGCATTTCGTATCAAGTACGAGCTGAAGCGTCATCGTTTGATACATTTCGACGAGAGGCCTTGGCGATGCGACGATTGCGAGCTCTCGTTTCGACAGAAGCGATACCTGGTCAATCATCGTAGGATCAATCACCGTGATACGAAAGTTACCAGAACGAATTTGTAA
- Protein Sequence
- MAAKGTAISNAPENNSPEQYIEYDIEEKPQVSIDADEQTEATEQFFNWSQICRVCANTNDHIIPIFEAEGAEHDLINKIHKYLPIQVSKTDTLPLQLCYHCAATILAWHELLEGCLDAEKQLLEMQVEQSEKQQLETKLSENLNEEQIDDPEQAVMEQQEEDPTEHASIGEKPTKRSDRAEETFKVFLEALNICRRTRRSTVPVNDEKPMEMQKIGDFSPSGIRPNLQALLDENPDRPIEKTARKTPRKNKKRKKSPLSKSDTQYEETINHDDDTSPDEDDEKNVRVKCNVCSREFSHIKELRVHVEEHKNIPAARNPYKCDECSKDFRLKDSYLRHLRIHRDERPFTCHVCGKQFRDSGGLSRHVKDVHAKLKNFSCDICSNSFSSKATRDDHRRTHTGERPYACDNCNKSFKSRACLYIHSKLHTDEFPYPCIHCEKKFRRRQEMLVHVSTHTGEKNYSCDVCSRRFRVKNEVKRHKLTHSDEKPYVCAKCGLSFRQNRYLNNHVKSRHSQSSKTGETKFGNFLKKETEELVESVTRRTTRLSRRGQREFPCKNDEYSSNERSKLRKKTQSSSERCSRVFKRASNLKKPGQKEEPKKTIKLKHEDNDKEVPKQSSSWNDLDTSHKGRKSNYPCLYCDYTATKKKHLELHTREHHEGNSILDKKQKRDVDNDLVTRARMEANGRVYYHCDDCGKNLFSPYTFFSHMRIHTGERPFTCHLCGKQFRVNQGLARHLRETHAGIKNFSCDICSRMFSTKRNVDDHRRIHTGERPFVCNVCGKAFKQKASLFVHNRSHTDSFPFKCNYCGQGFRTRPPLILHLTIHTGEKPHTCDICDRAFRIKYELKRHRLIHFDERPWRCDDCELSFRQKRYLVNHRRINHRDTKVTRTNL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -