Nmel006999.1
Basic Information
- Insect
- Netelia melanura
- Gene Symbol
- -
- Assembly
- GCA_964007305.1
- Location
- OZ023255.1:12882230-12886056[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.9e-09 4.5e-06 26.9 0.0 2 38 16 51 15 55 0.95
Sequence Information
- Coding Sequence
- ATGGTACGCAATTACAAAAGGAAGACCATGCGACAGTCCTGGAACGAGGAAGCAATGAATCGGGCGATAATGGCTGTTACAGACGGAATGAGCTTGAACGCGACGGCGGAACAATACCACGTTCCTAAAACAACGCTCGCTCGATTCGTAAAAAAAGATCAGGAGAATCCTGATTTGGAATTGGTCGCTACGAAAGGTCTCGGAAGATTCACTCCGGTCTTTTCCATGGAACAAGAACGAaagctcgtttcttctttgaaAGAGATGGAAATCATCGTTCATGGCGTATCACCGTACAAACTACGAGTACTGGCATTCCAGTTAGCTGAAAAGAATGGGATTGGCCCGCCTTTTTCCGAAGGAATGGCTGGGCAGGACTGGCTGCGAGGTTTTCTAAAAAGGCACCCTGACATAGCGTTGCGTAAGCCACAAGCAACCTCAGCTGCGAGAGCAAAAGGATTTGACAAGATCGCGGTGTACAAGTTTTACGATTTACTGAGTGCAACAATCGAAAAATATGATCTCACACCAAATCGTATTTTTAATGTAGACGAAACTGGGTGCACCACAGTCCCAAAACATAATTGTAAAATCATCGCTACGAAGGGACAAAAGCAAGTTGGATGTCTGAGTTCCGCTGAACGTGGGAAATTGGTAACAATCGAACTATGTATGTCAGCTACAGGCGCCTACACGCCGCCGATGTTCATATTCCCTCGCAAGACTCCGCAGCCTGAACTTTTGACTGGAGCTCCGGATCAAAGTTGGGCAGAATATAATCCATTGGGATGGATAACGACTGAGATCTTCTATGAGtggtttaaaaaattcgtcacTTTTTCGGGAGCAACAAAGAACCAACCGGTACTGCTCTTATTGGATGGACACGCTTCCcatacaaaaaatttgaacgTCCTGGATTTAGCTAGAGAGAATGGggtcattattttgtgtttccCCCCTCATTGTACACACCGACTGCAACCGCTAGATGTGAGCTTGATGAGACCAATCTCTATTTACTATTCGGCTGCCGTTAAGAAGTGGCTACGCAATAACGCTGGGTGTGTTATTACCCAGTCGCAAATTGCCGAGCTGTTCGGTGAGGCGTTTATGCAAGCAGCATCGTTATCAAACGCAGTTAACGGGTTCAAAAAAACTGGCATATGGCCTTTTAACAGAGACGTTTTCACGGATCGTGACTTCGCGGCGGCACACGCAAATACGGTTTCGTCGTCCAACGTGAACGCAGAACCCTCGACCACCGTGGGCGAAAATCTTCCGACGAATTCAAATCCGGGATGCTCCACAAGCAACCAGCAAAACCAGGAAATCACTTCCAACAGACCGGGAATCACTTCTATCGAATCTCTTCAAAACATTTCGTCCACAGAAAATCTCCTTGACGAAAGTTCCGACAGTTTGAGTCAGGTTTTGAGCCAAATGTCAATTGACGAAACAAGGTGCTCTGCCGTATATAATTTAAATCGAATTACGAGTCCTCAAGCTGAGTGTTCAAACAGTGTATCCATAGACGTGAACGGAATCGACTCTGCCGAACATATGGTGTTATCAGGTGTATCGTTTGATAGTGGATCCGACAGTGATTCGTTCATGAGAAAACGAGGACACGTATACACTGGACCTCTCGATGATTTCGAATCAGAAGAAGATCACGATATTATATGCTCcacgatggaagaaaaaacaaatggaaaTCCGAGAAAGAAAATGCGAACCACTGCTGAAAAAGTCGTCGATTCACCGCAGAAATTAAAGTCtcccgtaaaaaaaaacgtagcgaGCTCTTCGAAGACTCAGCCCTTCGAAATATCACCATCCCAGTTGCTTCCGATATCGGCaggcaaaaaatcaaaacgtaAGGAGACCTCAAGAAAAGGTACAAATGGCATTCTTACGAATTCTCCGTACTACAGAGAACTTCGTGAGAAAAATCCAGCGGCGTCGATAACAACCGAGGATGACGCATCATGCCTTTTCTGCGGGGGCTTATATTCGAAATCCAAGGAATCCTGGATTCGTTGTAATTCATGCGAGAAATGGGCCCACTATTCATGTGCCCATGTTGACGATAACTTAATCGAGTACGTTTGCGACAattgtgccgataaaaattaG
- Protein Sequence
- MVRNYKRKTMRQSWNEEAMNRAIMAVTDGMSLNATAEQYHVPKTTLARFVKKDQENPDLELVATKGLGRFTPVFSMEQERKLVSSLKEMEIIVHGVSPYKLRVLAFQLAEKNGIGPPFSEGMAGQDWLRGFLKRHPDIALRKPQATSAARAKGFDKIAVYKFYDLLSATIEKYDLTPNRIFNVDETGCTTVPKHNCKIIATKGQKQVGCLSSAERGKLVTIELCMSATGAYTPPMFIFPRKTPQPELLTGAPDQSWAEYNPLGWITTEIFYEWFKKFVTFSGATKNQPVLLLLDGHASHTKNLNVLDLARENGVIILCFPPHCTHRLQPLDVSLMRPISIYYSAAVKKWLRNNAGCVITQSQIAELFGEAFMQAASLSNAVNGFKKTGIWPFNRDVFTDRDFAAAHANTVSSSNVNAEPSTTVGENLPTNSNPGCSTSNQQNQEITSNRPGITSIESLQNISSTENLLDESSDSLSQVLSQMSIDETRCSAVYNLNRITSPQAECSNSVSIDVNGIDSAEHMVLSGVSFDSGSDSDSFMRKRGHVYTGPLDDFESEEDHDIICSTMEEKTNGNPRKKMRTTAEKVVDSPQKLKSPVKKNVASSSKTQPFEISPSQLLPISAGKKSKRKETSRKGTNGILTNSPYYRELREKNPAASITTEDDASCLFCGGLYSKSKESWIRCNSCEKWAHYSCAHVDDNLIEYVCDNCADKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01255473; iTF_01255468;
- 90% Identity
- iTF_01255473; iTF_01255468;
- 80% Identity
- -