Nmel013851.1
Basic Information
- Insect
- Netelia melanura
- Gene Symbol
- lola
- Assembly
- GCA_964007305.1
- Location
- OZ023256.1:29085541-29091749[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-15 9.2e-13 48.3 0.0 2 42 421 462 420 465 0.94 2 2 6.3 4.8e+03 -2.0 0.0 30 42 465 478 464 479 0.77
Sequence Information
- Coding Sequence
- ATGTCTATGCAACAGTTCTGTTTACGATGGAACAATCATCAGCCAAATTTCATATCCGTCTTCTCGTCGCTGCTGAACAATGAGACTCTGGTGGACGTTACTTTGGCCGCCGAGGGTCGTCATCTTCAAGCTCACAAAGTCGTACTATCGGCGTGCAGCACATACTTTCAGTCCCTCTTCACCGTCAATCCCTGTCAGCATCCTATCGTCATTCTCAAAGATGTCAAATTCTCCGATCTCAAGATCATGGTTGATTTCATGTATTACGGCGAAGTGAATGTTTCCCAGGATCAATTGCCCTCGATAATCAAgACAGCGGAAAGCTTGAAGATCAAGGGCCTTGCGGAGATGCACACAGCTTCTCTGACAAAGTGGCCAAGCGGAAATAGTGAACCTGGTGGCGGAGATCGTGGCGAGTCCTGCTCACCGAGTCCATCACCTTTGTCGCCATCTTTCCGTAGAAAGCGTTTGCGAAAAACATCGACCGGTTCGACGTCCGGTGGCTCGGCCGATAAAGCcgaagaaataaacgaaattactCTCGTTGCCACGAATATCGTTAAGCCCGAGCCCCACATTGTATCGCAAGAGGGCGGTGAAAATCTCCGGCGTCCATTGAACACTACGACCGATACACAAGGCAGCATCGACGAGGATCAAATATCTATTATGAGCAACATGGAAAGCAGTACGGCAACGACAGGGGCTCAGAGCGAAGGTTCCTTGCAAGAAGTCGGCCATCAACCCGGTGGAAATATTGGTCACAGTTCCGTGTCTTCTCAGCCACCCGCTCACCAAGGATTGCAATGGACAATAATGGAGCATACGTATCCGCGTTTCGCTCTGTCATCGTGTCAAACGAATCTGTCGGTCCAAGCTACTTCGGCATTCACATCACCCGAAATAACAGCGACATCCAGCATCAGCGAGCATCAGTATCAATCGGGCGGTGGTCCGAGTACGACAACGGCATCGAGTTGCGCATTGACGAGCTATCCGAATTCCTCGTCTCACGGTTCCATGCAACACGGTTCAAACTCGAGTGGCGGAGGAGGCGGCAGTGGCAGCGGAGGTGGAGGCGGTGGCGGTAACGGTGCAAACGGAAATGGGAATGGTAACGGCGCGGGTAACGGCGGTGGAGGAAGTGGACAGAGCGGTGGACCATCGCCAGGGCCAACACAGTGTCCCTCCAACTGTCAGAGCCCATGCGCGAGTCCTCAAGCaacgataaagagaaaaagatcGACCAATCCCCAGgccgatgaaaattttattcgcgcCCTCGATGCCGTGCGTTACGGTGGTATAGGATTTTGTAAAGCCGCTCGCATGTTCGGCGTCAACAATCGAACTCTTTGGCTAGAATACAAGAAACGTGGCTATCCGAACAATCGTCCAAGTTTGAAATCGCGAGTCAAGCAAGAAACTACCTCGTCACCACCGCCAACATCGTCCACGCAATCTGTGAATTCGCAGAGCCCAACGCCAATGGGACCACCGACGACGCCACACAGTACACACAACACACATCCCACTCACACGATGCTTACCGCCCACACACCTCACACTATGCTATCCGGTTATATCGACAGCAGACACACGGATTACACACTACCGAGCTCGACAATGCCGATCAATTTGCACGGCGTTAATTACAACTCAATGTGA
- Protein Sequence
- MSMQQFCLRWNNHQPNFISVFSSLLNNETLVDVTLAAEGRHLQAHKVVLSACSTYFQSLFTVNPCQHPIVILKDVKFSDLKIMVDFMYYGEVNVSQDQLPSIIKTAESLKIKGLAEMHTASLTKWPSGNSEPGGGDRGESCSPSPSPLSPSFRRKRLRKTSTGSTSGGSADKAEEINEITLVATNIVKPEPHIVSQEGGENLRRPLNTTTDTQGSIDEDQISIMSNMESSTATTGAQSEGSLQEVGHQPGGNIGHSSVSSQPPAHQGLQWTIMEHTYPRFALSSCQTNLSVQATSAFTSPEITATSSISEHQYQSGGGPSTTTASSCALTSYPNSSSHGSMQHGSNSSGGGGGSGSGGGGGGGNGANGNGNGNGAGNGGGGSGQSGGPSPGPTQCPSNCQSPCASPQATIKRKRSTNPQADENFIRALDAVRYGGIGFCKAARMFGVNNRTLWLEYKKRGYPNNRPSLKSRVKQETTSSPPPTSSTQSVNSQSPTPMGPPTTPHSTHNTHPTHTMLTAHTPHTMLSGYIDSRHTDYTLPSSTMPINLHGVNYNSM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00629212;
- 90% Identity
- iTF_01057005;
- 80% Identity
- iTF_01056165;