Ncom016950.1
Basic Information
- Insect
- Neria commutata
- Gene Symbol
- nfxl1
- Assembly
- GCA_963457695.1
- Location
- OY735248.1:24275254-24278491[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 2 2.5e+04 -8.1 6.4 15 19 175 179 174 179 0.82 2 19 0.11 1.3e+03 -0.1 0.2 4 10 210 216 209 218 0.94 3 19 1e-08 0.00013 22.4 14.5 1 18 224 240 224 241 0.98 4 19 1e-07 0.0013 19.2 16.6 1 19 277 296 277 296 0.97 5 19 0.38 4.6e+03 -1.8 1.0 6 10 321 325 320 325 0.92 6 19 3.6e-08 0.00045 20.6 15.2 1 19 331 349 331 349 0.99 7 19 1.6 2e+04 -3.8 0.2 12 15 364 367 364 368 0.75 8 19 0.92 1.1e+04 -3.0 0.5 1 7 375 380 374 382 0.49 9 19 8.4e-06 0.1 13.1 9.4 1 18 385 402 385 403 0.95 10 19 0.32 3.9e+03 -1.5 0.4 1 5 412 416 412 421 0.75 11 19 1.6e-05 0.2 12.1 14.9 1 18 437 454 437 455 0.98 12 19 6.8e-08 0.00084 19.8 15.0 3 18 466 481 458 482 0.85 13 19 2 2.5e+04 -4.9 15.0 9 19 527 537 520 537 0.89 14 19 0.0069 86 3.7 4.8 3 11 550 558 540 559 0.85 15 19 0.89 1.1e+04 -3.0 1.4 6 10 618 622 617 622 0.88 16 19 9.6e-05 1.2 9.7 5.1 1 12 628 639 628 639 0.96 17 19 0.033 4.1e+02 1.6 17.9 3 19 668 684 667 684 0.92 18 19 1.7 2.2e+04 -3.9 1.6 8 13 689 694 688 694 0.74 19 19 1.5e-06 0.019 15.4 10.1 1 16 735 749 735 755 0.93
Sequence Information
- Coding Sequence
- ATGTCCAGCACACAGAGTCCGTGGAATATGAAGCAATTGCAGCCGCTGCCCAAATCCAGTGTAAAAAAGCCGAAGGATATTGAAGACGTTTCATCCAAACGATTTAAAGAGGCACATTCACGTAACATTGAGGCTGCCAAAAAAATTGTCGAAAGTTATGCGTCTAGTGAAGATGAAGAAGATTTGGATGAGAAGAGCATACTGACGGCGCTCTATGCGCACTACAAGCCACCGAATGACGAATCACAACCTTTTACTAAGACTGTCGGATTTCTGGAGAATGTGCTGCACTCGGGCGCTGCTACATGTCTTATTTGCATTGGCAGTGTGCGGCGCGCCGATGCCATCTGGTCGTGTCGACACTGCTATTGCTTCTTTCATCTCAACTGCATCCGGCGCTGGGCTAACGACAGCGTTGCTCAACTGAAGGCGCAGGCGGGTCAGCATCTAAATGAACAGGGCTACTATAACCACCTGGGGGAATACGTGCCGCCTAAGCGTGCGCGTTCTTTGCACTGGTGTTGTCCACAGTGTCGGAAAGAGTACGCTCCCGTCGAACGTCCAACTGAGTACGAGTGTTTTTGTGGCAAAGAGTTGAACCCGTCGGCACAGCCATTTCTCGTACCGCATTCATGTGGCGAGATATGCGGCAAGCAGCTGCAGCCGGAATGTGGACATAAGTGCATGTTGCTCTGTCACCCAGGACCTTGTCCCCCCTGCGCCCAATATGCTGTTACTTCGTGTCTTTGCGGTTGGGCGTCTGCAAAATCGATGCGCTGCTCTGAGAAGAGTTGGCAGTGTGTAAAAAAGTGTGAAAAGCGTCTGGCATGCGGCGAGCACCAATGCAACCAGCTCTGTCATAAGCCCGGACAATGTCCACCTTGCAGCAGCACGAGCATGCAGCCTTGCTACTGCGGGCGTGAGGTGAAGGTGCGCAGCTGCTCGGATCAAAAGTGGCACTGCCAAAAGGTGTGCGGCTTAAAGTATTCTTGTGGCAAACATAGCTGCAGAAAAGTTTGCCATGAGGGCTCATGCGGCGAATGCCCCCTGGGGTTGCCGAGATCTTGCCCGTGCGGGAAGTCGaaaatagaGGGTCCTTGTACCACCGAAGTAATCGAAACGTGTGGAGACACTTGCCAAAAGCTGCTTCCTTGCGGCCTACACACATGCACCCAACGCTGCCACCGCAGCGAATGTAACTTGTGCCTCGTGATAACGAAGAAAAAATGCCGTTGTGGTATGCATGAGAAAGAGTTGCCATGCTGGAAGGACTTAACCTGTGACACGAAATGCAAGCGAATAAGAGATTGCGGAAAGCACGCCTGCAACAGAAAGTGCTGCGACGATCAGTGTCCGCCATGCGACAAAGTGTGCGGAAAGCCATTATCATGCAAGAAACACAAATGCCAGTCGATCTGTCATGAAGGTCCGTGTTACCCCTGCGAACAACAGTCCCAAGTAAACTGCAGTTGCGGCAAAACCTCGAGAAATGTACCATGCGGCCGCGAGCGTACTGCGCGCATTATCTGCTTGGAGCCATGTCGCATTCCCACAAAGTGCCATCATCCGTCGAAGCATCGCTGCCACAAACACGAATGCCCCCCGTGCAGTCAGAAGTGCGGCTTAGCCAACGTCACGACGGGTTGCGAACACGCCTGCGAAGCCAAATGCCATGCGGCAGTGAAAGTAAAGAGGCCTGTCAACGCTGATACCACGAGCAAATGGGACCGCACCAAAATGTTCGAGTACAAGCCACTGACTCATCCGCAATGTGAACAAAAAGTAAGCGTGACCTGCATCGGTGGACACGAAACTTCCGAGTGGCCTTGCTGGAATTCGAAGCCCACTTCCTGTCAACGCAAGTGCAATCGCCTGCTGCGCTGCGGCAACCACAAGTGTGTCCTGGCGTGCCACTCTGTTGCGGATATTCAGGATTTGAAGGAACAAAAGGGCTGCTCTAGTTGTCAAGAGGGCTGTGATGTGCCACGGCCCGCCGGCTGCACACATCCCTGTCCGCGGCCTTGTCATCTACCGCCGTGCGATCCTTGCCAAGTCAACATCAAAAGTAAATGCCATTGTGGCTTGACGCAGGTCATCTTTAAGTGCTCCGAATTCTACAATACAGAGGGTAGCGAGGAAGAGATTGTGGCAAGGCAGGAGCGCTTAAAAAGCTGTGGAAATCGCTGCTTGAAAAATTTCCCATGTGGACATCGCTGCATTACCACATGCCACTCGGGCAAATGCCCGAATGCCGAGTTGTGTCGCAAAAAGATGCGCATTTATTGCGAGTGCAAGCGTCTGAAATTCGATGTATCCTGCGACAAGCATCGGGCGGGTCTGAAAACGCTGGCCTGTGATGAGAATTGCATTGAAACACTTGCCAAATTGGAACTGCATCGAAAGCGGCAAGCCGAGCAGGCGCGGCTACAGGAGGAGGCTAGGAATCGCTTGGAAGTGGAGCAGTTCGAAAAGAAATTCAGCAAGCGCAAACACAAGGAGCGTAAGGTTACGATAGAGAAGAGCCAGCGGGAAGTGAACTGGAAACTTATTGCCATATGCGTCGCCGCAGTGTTTGCCGTTTCTCTGGGTATCGCCGCGCTCTACAAGGAGAACAAATAA
- Protein Sequence
- MSSTQSPWNMKQLQPLPKSSVKKPKDIEDVSSKRFKEAHSRNIEAAKKIVESYASSEDEEDLDEKSILTALYAHYKPPNDESQPFTKTVGFLENVLHSGAATCLICIGSVRRADAIWSCRHCYCFFHLNCIRRWANDSVAQLKAQAGQHLNEQGYYNHLGEYVPPKRARSLHWCCPQCRKEYAPVERPTEYECFCGKELNPSAQPFLVPHSCGEICGKQLQPECGHKCMLLCHPGPCPPCAQYAVTSCLCGWASAKSMRCSEKSWQCVKKCEKRLACGEHQCNQLCHKPGQCPPCSSTSMQPCYCGREVKVRSCSDQKWHCQKVCGLKYSCGKHSCRKVCHEGSCGECPLGLPRSCPCGKSKIEGPCTTEVIETCGDTCQKLLPCGLHTCTQRCHRSECNLCLVITKKKCRCGMHEKELPCWKDLTCDTKCKRIRDCGKHACNRKCCDDQCPPCDKVCGKPLSCKKHKCQSICHEGPCYPCEQQSQVNCSCGKTSRNVPCGRERTARIICLEPCRIPTKCHHPSKHRCHKHECPPCSQKCGLANVTTGCEHACEAKCHAAVKVKRPVNADTTSKWDRTKMFEYKPLTHPQCEQKVSVTCIGGHETSEWPCWNSKPTSCQRKCNRLLRCGNHKCVLACHSVADIQDLKEQKGCSSCQEGCDVPRPAGCTHPCPRPCHLPPCDPCQVNIKSKCHCGLTQVIFKCSEFYNTEGSEEEIVARQERLKSCGNRCLKNFPCGHRCITTCHSGKCPNAELCRKKMRIYCECKRLKFDVSCDKHRAGLKTLACDENCIETLAKLELHRKRQAEQARLQEEARNRLEVEQFEKKFSKRKHKERKVTIEKSQREVNWKLIAICVAAVFAVSLGIAALYKENK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -