Ncom016123.1
Basic Information
- Insect
- Neria commutata
- Gene Symbol
- -
- Assembly
- GCA_963457695.1
- Location
- OY735248.1:14703442-14707944[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.022 2.1 9.4 0.5 3 23 317 338 315 338 0.94 2 9 0.016 1.5 9.9 4.6 2 23 460 482 460 482 0.91 3 9 0.0015 0.14 13.1 0.5 2 23 570 592 569 592 0.95 4 9 0.0003 0.028 15.3 0.9 2 23 882 904 881 904 0.96 5 9 0.0026 0.24 12.4 0.1 2 23 949 971 948 971 0.92 6 9 0.012 1.1 10.3 3.6 2 23 1009 1031 1008 1031 0.96 7 9 0.11 10 7.2 4.2 2 23 1045 1067 1044 1067 0.92 8 9 0.00013 0.012 16.5 0.1 2 23 1148 1170 1148 1170 0.96 9 9 0.052 4.8 8.3 0.6 1 23 1268 1290 1268 1290 0.99
Sequence Information
- Coding Sequence
- ATGGCTGCCTCAATATACGCCACCCCACCGCCAGACCTAAGCAGCGAAGACACCGCACTCTCCGACGTTTCCAATGCATCATCGCTAAACAACCACAATCGCAGCAACACAAACAAGAGCTCCTCCGATGAAGCCACCACAGCCGCAACGGCGACTATGAAACATCAGAAACGGTCCATTGCTGATGTTCTAGTCGGTAATCCTAGCCCGAAGCCGGAGCGGGAGCAGAGGCATGCACTCGAACtggagcaacagcaacagcaacggcaagAGCAAGAGCAGCTACATCAATTGAATTCCATATCCACAGACGCGGACACGGAAGGAAGCAATACAGCTGCAAGCGATGCGGCTGCGCTGACCGAGACGGTCGCACAAAACACTTCCGCGGCAATGGCCGCTGTGGCAGCTGCAGCGAATGCAGCCATGCAATTGCAGCTTCTGGAGGCAATAAACGATGCAGCCAAGAAGCGACGCAAACAGCACAACCCCAGTCGATTGGGCGTACTCAATTTGAGTGGCACAGCCGGAGAAAACATCGATGACGCGAGCGGCATGAATGAAACAGCAGAAGAAGGCGCTGCTGAGGATGACGAGGCTGCATCGCAAATGGACGCGTCGGCGATTTCGATCGATTATGAGGAGAAGCTGTCGAAAATGTTTCTACCCAAGTCCATGGAGCAATTGAAGGAAACATTTGAGCtgctacagcagcagcagcaacatcttCAACAAGAGCACGGGGACGCGGACGGGGATGGAGAAGAGGAGCAACAAGAGACGCAAGCATCTGAGCCACAACTACTTGACAACATATCAAACCCTACTCATGCAACCAGCAACCGTAATGCCGCAAACGCGAAGCAGAAAACAGACGAATCGGTAGCCGAGGTCCCAGAACCGGAAACGGCTGACGAGGACGACCTCAGAAACCCCTATCAGACGTTCTGCAAGCAATGTGGTGAGAATTTCGAAACCGAGTTCAAACTGGGACTGCACATGTTGCAGGAGCACGGCGACAACATCGAGGAACGTGAGAACACCAATCCTGTAGATGCTCACAGGAAAGGCGAGTTGACGCCGTTCGATATCCTGTCGTCGGTCAAGGTGAAATTAGAGCGCCCTGACTATGACAGTCCCTTATCACCACAATCGAGTGCGACGATGGGCATCCACGGCGAACAGCCAAGTTTACTGGCTAGTGGAAAAGAGCAGTGGATGAGCGGTATGCCGGGCGTGGCGTTTCCCTTTGCTCCAGAAGCGGCCGCCGCAGCAGCGCTCTCCGCCGGCGGCTATCTTCCATTGCTAGGCGTGCCAGGCTTTCCGAGCGTAGACGGGCTCAACCGACCGCCACTGAGAATTTTCAACCCCGAAGCCTATTGCGATCTTTGCAACAAAGAGTTCTGCAACAAGTACTTCCTGAAGACGCACAAGGCCAACAAGCATGGCATCTACGACCCGGCCACTCCCTCTTCGGCAGaaggcggcagcaacagctcCAACCTTACCGCCATGAACCACATGTTTCAGCTGCagatgcaacaacagcagcaacttcaactgcaacaacaaaagcaacaacagctgaaCTTGGaatatcaacagcagcagcaagcgcaGCCCATACCCGAAGCGCCAAGAAAACAAGCAACGCAGCAGGCTCTCAGTATTCCGCAACAAGTAACACCGCCGGCGCCGCCGCCAGTCTACTGCGACATTTGCTCAAAGCGATTCACGAACGTGTTCGCCATGCGGCGCCATCGGGCCAAAGCCCACGAGCAGGCTGCCGCTCAGCGCAACAGCCCTCACGAGTCCAAGCCAGAGGCGAGCCCAACCAATATGGACTCCAAACTGGAGACGGCCTACTGCGCTGCAAGCTCAGATGCATCCTCGAAACAGCAGTTCCAAATGCCCGAAGGCTTTACGCAAGATTTCACCCTGGAACAGGAGGAAGTGTCCTTCACGCCACAACCACGCAAACTTTCGCCGCAGTCTCAGCAGCAGGCACGTGAAGCCAACTTCGCTCACGACAAGCTCAAGCGCCTGGGTGTGCACAACCCGGAAGCGTTCTGCGAGATTTGCTGCAAGGAGTACTGCAACAAGTACTTTCTGCGAACACACAAATGGAAGCGCCACGGCATTTTCGTGCCACCGGACGACCTCAAGGATGAACAGCTGGCACTGGCGCAGAAGATGTCTTGGCCCTTCATGAGCATGCCCGGCATGCCGCTGAATCTAATGATGGCCAACGAAAAGGCGGTCGTTGCACAACGCATGCTAGCTGCCGCAGCCGCCGCCAGCAACGTGCCAGAGGACACTGGGCCCATGCTGAAGCGCATAAAACTGGAGATGCAGGAAGAGGATGAGTACAAGGCAAACGAAGAGAATCCAACGGCGGATAGATTCGTTGATAGAAGCGGCGATGGCGGTGGAGGTGGCGGAGGCGGAGGCGTCGCAGACCAACAAACACATCACATGGCGAACATAACATCCACATCCGAGACACAAAATATGCCACCAGAGTCACTGGAGTCAAGCGCTAGCATCCTGGCCAGCCCGGAAGCAGCCATGGGGCTACAGAATCTGCAGAAGTTGCAGTCCATGATTCAGCAACTCAACGACCTGAACGGCAAGCGTCCTGTATCGTGCCACTTGTGTGGCAGGGAGTTGGAGAATCAGTACGCGCTGCACGCTCACATGATGACAGAACACTCCGGCACTGCGGACACCGGCAGCAGCTTGATGCCATTGAACTTCCAACAGCACAtcctgcagcaacagcagcaggcgcTGAAGCTGTCGCCGTCAGATTCGAACGCCTCCGTTTCAGCACAGAGCGATCTGCGCTGCAATCAGTGCGACCGCGACTTCCCCACCCTACCAGAATTCAAACAACATATCGCCGAAGTTCACCTCCTGTCGGGCAGCCCACTGCGAGACGGCTTCATAACGCCCGAGCGCCCCACCAACCCAAATCCGGTGGGCACGTCGCGCCCGCCCTACACCATAACGCCGACGAGCAGCTATTGCGAAATATGCAACAAGGAGCTGTGCAACAAGTACTTCATGAAGACGCACATGCAGCGCATGCATGGCATCGAAATCGAGAACGGGGCCCAGATCGGGGGCGTCGTCTGCAACATCTGCAACAAGGAGCTGTGCAGCAAGTACTTTCTGCGTGTGCACAAGCACAACACGCACGGCATCGTTGAGGAGGGTGCGCCGCTGCCGCAACCCCGCCAGAACGGCATCAATTTggaaacacaacaacaacaacagcagcagcagcagcaacaacaacagcaatcgcAGCCACAGACGTTGGTCGAAAATGATTTGGGGCGCAGCCTCAATGTGAGCCCATTCGGCAGTGGAGCGAGCGCCTCAGGAGAAGCGAAGGCCGATGCGTCAGATGCGCGTTACTACGCCAACTATACGGAAGTGTGTCCCATCTGTGCACGGCGTTTCCGCAGTCCCAAATGGTTGCGTGCTCACTTGCTGAGCGACCACGGAACTGCAGGCGTGGAGAAGCTGCGTGAGATGGAGCAACAATTgggcagcggcagcaagcCTGCGAGCCCCACACTCAAGATTCCAAATGGCGCAGGTTCGGGTGTGGGCGCGGGCGTAGTAGGCGTAGGCGTGAACAGCACCGGAATGGGCCACAACCCGACGAATCTGGCTCAAGCATTGCAAAACTTAAACGCACAACATTTGCTCAGCAACATGCCCAAGAACGTCTTGCCAGGCATGTTTGGCCCGGTCGCTGAACAGGCTCTGCAGTCGCCTCGTTTCAAGGAGTATCAGTGTTCGCTTTGCCCCTTCACCACGCCCTACTACGCATTTCTCTTCATACACGAGCGCTCCCATTCAATTTTGAACAACAGCGTCGACCCACCTGTGTCGGAAGCCACTAATTTGGCCCATACTGAAAATGGGCAAGACTCCGTGAGAAATGGCAAGGAGAAAGGCGAGAACGCAATCTCCTTGGGCCGGGACAAATCGAAACCACTACAAATGGATGAGACCATTTCGTACTTCACTGGCAAAACAAATAATAGTGAGCCCACAAATCTCTCCACAAGGACTGCAACACCAACAGAGAAGCCAGCAAAGAGAACAAACGAGCCGACGGCACAGCGAGCTCCCAAAGAAGTGCCCCGTAGCACGTCCGCGGCTTCCACAACCGATGCTAAGGTGGAAAAGGTGCGCTCTATCGCCACCTCTCCCATCTTCTTACCCAACAATGCAGTACCTCAAGACATGCTGAAGGacattgcaaataaatcaaagaaGCCGATCTCCTATGCCATACCAAAGGACACCTCCGACCTGGGAGAGCATCATATGCAAGCGTTCATGGTGAAAGCTGTCGCAGACACCAGCAGCCACGATGAGAGAAGTAGCAACATGAACAGGTTTGTGCCAGCAATTATTTACTTGCCCGTTAAAGAACGCGTCTCGGATCCGATTACTGTGACCTTCAACTTAACACCGGCTTAG
- Protein Sequence
- MAASIYATPPPDLSSEDTALSDVSNASSLNNHNRSNTNKSSSDEATTAATATMKHQKRSIADVLVGNPSPKPEREQRHALELEQQQQQRQEQEQLHQLNSISTDADTEGSNTAASDAAALTETVAQNTSAAMAAVAAAANAAMQLQLLEAINDAAKKRRKQHNPSRLGVLNLSGTAGENIDDASGMNETAEEGAAEDDEAASQMDASAISIDYEEKLSKMFLPKSMEQLKETFELLQQQQQHLQQEHGDADGDGEEEQQETQASEPQLLDNISNPTHATSNRNAANAKQKTDESVAEVPEPETADEDDLRNPYQTFCKQCGENFETEFKLGLHMLQEHGDNIEERENTNPVDAHRKGELTPFDILSSVKVKLERPDYDSPLSPQSSATMGIHGEQPSLLASGKEQWMSGMPGVAFPFAPEAAAAAALSAGGYLPLLGVPGFPSVDGLNRPPLRIFNPEAYCDLCNKEFCNKYFLKTHKANKHGIYDPATPSSAEGGSNSSNLTAMNHMFQLQMQQQQQLQLQQQKQQQLNLEYQQQQQAQPIPEAPRKQATQQALSIPQQVTPPAPPPVYCDICSKRFTNVFAMRRHRAKAHEQAAAQRNSPHESKPEASPTNMDSKLETAYCAASSDASSKQQFQMPEGFTQDFTLEQEEVSFTPQPRKLSPQSQQQAREANFAHDKLKRLGVHNPEAFCEICCKEYCNKYFLRTHKWKRHGIFVPPDDLKDEQLALAQKMSWPFMSMPGMPLNLMMANEKAVVAQRMLAAAAAASNVPEDTGPMLKRIKLEMQEEDEYKANEENPTADRFVDRSGDGGGGGGGGGVADQQTHHMANITSTSETQNMPPESLESSASILASPEAAMGLQNLQKLQSMIQQLNDLNGKRPVSCHLCGRELENQYALHAHMMTEHSGTADTGSSLMPLNFQQHILQQQQQALKLSPSDSNASVSAQSDLRCNQCDRDFPTLPEFKQHIAEVHLLSGSPLRDGFITPERPTNPNPVGTSRPPYTITPTSSYCEICNKELCNKYFMKTHMQRMHGIEIENGAQIGGVVCNICNKELCSKYFLRVHKHNTHGIVEEGAPLPQPRQNGINLETQQQQQQQQQQQQQQSQPQTLVENDLGRSLNVSPFGSGASASGEAKADASDARYYANYTEVCPICARRFRSPKWLRAHLLSDHGTAGVEKLREMEQQLGSGSKPASPTLKIPNGAGSGVGAGVVGVGVNSTGMGHNPTNLAQALQNLNAQHLLSNMPKNVLPGMFGPVAEQALQSPRFKEYQCSLCPFTTPYYAFLFIHERSHSILNNSVDPPVSEATNLAHTENGQDSVRNGKEKGENAISLGRDKSKPLQMDETISYFTGKTNNSEPTNLSTRTATPTEKPAKRTNEPTAQRAPKEVPRSTSAASTTDAKVEKVRSIATSPIFLPNNAVPQDMLKDIANKSKKPISYAIPKDTSDLGEHHMQAFMVKAVADTSSHDERSSNMNRFVPAIIYLPVKERVSDPITVTFNLTPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -