Ncom014443.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Neria commutata
Gene Symbol
-
Assembly
GCA_963457695.1
Location
OY735247.1:44165847-44184809[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 8.5 7.8e+02 1.3 0.1 12 23 136 147 135 147 0.91
2 15 0.0022 0.21 12.6 0.6 2 23 474 496 473 496 0.95
3 15 0.0043 0.4 11.7 1.1 2 23 502 523 501 523 0.96
4 15 0.0023 0.21 12.5 0.1 1 19 529 547 529 548 0.96
5 15 8.5 7.8e+02 1.3 0.1 12 23 674 685 673 685 0.91
6 15 0.00066 0.061 14.3 1.2 2 23 1044 1066 1043 1066 0.95
7 15 0.0014 0.13 13.2 2.2 2 23 1072 1093 1071 1093 0.96
8 15 0.00081 0.075 14.0 0.1 2 23 1100 1121 1099 1121 0.97
9 15 0.00014 0.013 16.4 0.2 1 23 1132 1155 1132 1155 0.95
10 15 0.067 6.2 7.9 1.8 3 23 1481 1501 1479 1501 0.93
11 15 0.0006 0.055 14.4 3.8 1 23 1506 1528 1506 1528 0.98
12 15 0.0007 0.065 14.2 0.6 1 23 1534 1556 1534 1556 0.99
13 15 5.5 5.1e+02 1.9 0.3 1 19 1564 1582 1564 1587 0.75
14 15 0.25 23 6.1 0.7 1 23 1635 1658 1635 1658 0.92
15 15 0.02 1.8 9.6 1.0 2 23 1692 1714 1691 1714 0.94

Sequence Information

Coding Sequence
ATGGCTTGTATAATGCGAGATTGTGGCAAAACAGCGTACAACAATAAACAAGTGCAGTTCTTTCGTCTGCCCACATTACCAGCGCTACGTGCCAAATGGTTTGCTGCCTGTGAATGTGATCCAGCCGAGTTGCCGAAAGCAGCAGCGGTGTGTTCGCTACATTTTAGCGCCGACGATATCTACTTGAAGGGCAAGAGGTTGCGTCTGCATCGCAATGTCCTGCCAAAAAGGCACTTCCAACAAAGATGCCCTTTCGCTTACAGTTCAGTTGATCCAGGTGGTCCAGCTGAGTTCGATTCCGTTGGGAGCGGTATCTCATCGGCACAAATTAATGAAACGCTGTCAGAACAATACTTTGTACCGATATATAAGCAGAGCAAGAACAGCAACACCGAGACCAAGGACACCCCAACCAATTTGCAGCAGCATGTGCGCGAGCACCAATATTTCAAACATGACTTGCCTATTATTTCACCTGAACCAGAGGAAATTGAATTCTCCCAGCAGCGACGAAGTACTTGTGGCTACATCGAAGTCTCTGCGGATAATAAGACCTACACAATGTTGTGCCAACAGTGCGAGCAAGAGTTCGCCATTTGGAATTGGGTGAAATTTGTGCAGCATGACAAAGAGGCACACAGGAACATGCAACGGGCTGCCGGAAGCGCCGACAACAGTGAAGAAACTGATATAGCCATTACAAATGACGCCCATCAAAGTGATACTGCGATGTCGTTGCCGCTGCAGAAAACTATAAATAAAGACGTGTTGGCAGACAACAAGCAGCAACGAgaacaacaaaatgtcaagGAAGATTGGCAGGACATAGTAAAAGAGAAACCGTTAGCAGAAACAGAATCCGTAGGCGGCGATGAATACCTAACCAAGCAGAAAACTGCGGATGAAGACGTGTTGGCAGAGAACAAGCAGCAACGAGAACAACAAAATGTCGAGGAAGATTGGCAGGGCATAGTAAAAGAGAAACCGCAAGCAGAAACAGAATCCGTAGGCGGCGATGAATACCTAAACAAGGTATGCAATTCCGTTTCGGACTCAGGCGCAAGCAAAGCTGACGAAGTATATTATGCAGTTACTCTCTCAAAAACGAAACCGGAAATTGTGCTGGATTTCTTAGCGCTGTTGCGCGAACATCCCATACTCGTGGGTCaacgccagcaacagcagcaagaatATAATGCCGCTTTAAGTGTGGCCACGGAGAAATTCAATCGGAAGTGGTCACGCTCAGTGACAGTGCGGGTCATGCAAAGGAGTGTGTCTGTAATTAAGCATTGGTATAGTGCAACGGTTAGATCGCGGGATAAGAAGGACTATTACATGAAAGAAAAGTATCAGTTATATTTCGATAAGTGCAAAACCTTCATGCCGAAGAACTTGCACCCGTATGACCGCAAGAAGTACTGCGAGCTATGCGAAAGAGGATTTAAAGTTCCGTCTAAATATCGCACTCACATGGCGATGAAGCACGGGAAGCCCAAGCTCAACTGTCACCTTTGCCCACGTGCATATTATTTTCAATGGAAGCTGACGAACCACATAAAGGCACACAAAAATCAGCGCGACCATGTGTGTGAGGTGTGCGGCATGTCGTTCGTACAGCTAAGGTACCTCAAGGTGCATGCGCCGTACAACAATAAACAAGTGCAGTTCTTTCGTCTGCCCACATTACCAGCGCTACGTGCCAAATGGCTTGCTGCCTGTGAATGTGATCCAGCCGAGTTGCCGAAAGCAGCAGCGGTGTGTTCGCTACATTTTAGCGCCGATGATATCTACTTGAAGGGCAAGAGGTTGCGTCTGCATCGCAATGTCCTGCCAAAAAGGCACTTCCAACAAAGATGCCCTTTCGCTTACAGTTCAGTTGATCCAGGTGGTCCAGCTGAGTTCAGTTCCGTTGGGAGCGGTATCTCATCGGCACAAATTAATGAAACGCTGTCAGAAGAACAATACTTTGTACCGATATATAAGCAGAGCAAGAACAGCAACACCGAGACCAAGGACACTCCAACCAATTTGCAGCAGCATGTGCGCGAGCACCAATATTTCAAACATGACTTGCCTATTATTTCACCTGAACCACAGGAAATTGAATTCTCCCAGCAGCGACGAAGTACTTGTGGCTACATCGAAGTCTCTGCGGATAATAAGACCTACACAATGTTGTGCCAACAGTGCGAGCAAGAGTTCGCCATTTGGGATTGGGTGAAATTTGTGAAGCATGACAAGGATGCACACAGGAACATGCAATGGGCTGCCGGAAGCGCCGACAACAGTGAAGAAACTGATATAGCCATTACAAATGACGCCCATCAAAGTGATACTGCGATGTCGTTGCCGCTGCAGAAAACTATAAATAAAGACGTGTTGGCAGACAACAAGCAGCAACGAgaacaacaaaatgtcaagGAAGATTGGCAGGACATAGTAAAAGAGAAACCGTTAGCAGAAACAGAATCCGTAGGCGGCGATGAATACCTAACCAAGCAGAAAACTGCGGATGAAGACGTGTTGGCAGAGAACAAGCAGCAACGAGAACAACAAAATGTCGAGGAAGATTGGCAGGGCATAGTAAAAGAGAAACCGCAAGCAGAAACAGAATCCGTAGGCGGCGATGAATACCTAAACAAGCAGAAAACTGCGGATGAAGACGTGTTGGCAGAGAACAAGCAGCAACGAGAACAACAAAATGACGAAGAAGATTGGCTGGACAATGAAAACCTAAACAAGTCATGCAATTCTGTTTCGGACTCAGGCGCAAGCAATGCTGATGAAGAAGATGGTGTAATAAATCTTAAAAAGACGAAACCGAAAATTGTGCTCGATTTCTTAGCGCTGTTGCGCGAACATCCCATACTGGTGGGTCGACGCGGTCGActccagcaacagcagcaagaatATGATGCCGCTTTAAGTGTGGCCATGGAGAAATTCAATCGGAAGTGGTCACGCTCAATGACAGCGCAGGCCATGCAAGGGAGTGTGACTGTAATGCAGCGATGGTATCGTGGAGCGGTTAGGGATAAGAAGGACTATTCCAAGAATGAAACTTATCAGTTATATTTCGATAAGTGCAAAGCCTTATTTCCGAGGTACGCTTTTGACTGCAAGAAGTACTGCGAGCAAtgtcaaaaagaatttaaagttCCGTCAAAATATCGCACTCACATGGCGATGAAGCACGGGAAGCCCAAGCTCAAGTGTCACCTTTGCCCACGTACATATTATTTTCAATGGAAGCTGACGAACCACATAAAGGCACACAAAAATCAGCGTGACATTGTGTGTGAAGTGTGTGGTATGTTGTTCGTACAGCTAAGGTACCTCAAGGTGCATGCGCGTACGCACGACCTCGTAGAGAGAAAAGTCGAGGAGCGCTATAGGTGCGACATGTGCCCCAAAACATACTCGTCGCCCGGTAGACTAAGCAGGCATAAAGCTGTCATTCACGGTTTGTCAAACGCAAGAGTACGTGGGCGTGGTAAGGTGCGTGAAGAAGCTAACATGTCTACCGCTGCCAATGGTAAGCCAAAAGTTCGCAAGCCCTATGAGTGCGATTTGTGTGACGTCTCTGATGATAGCAAGACCTACACCATGTTGTGCCAACAGTGCGAGCAAGAGTTCGCCATTTGGGATTGGGTAAAATTTGTGAAGCATGCCAAGGAGGCGCACAGTAATCTCCAACTCGCTTTCGCAAGTGCCCTCAACCATGGAGGACCCTCGGCAATGGAGGAATGTGGTGGCGTATTCGTCATTACAGCTGCCGCTGATGCAAACAATGCTGCGCTGGCATTGCCGCTGCAGAACACTCTACAAAAAGAAGTGTTGGGAGAGAAATTGGAGCCGCGAGTTGCAGCTGTTCAGGACGAAGTATTTGCAGAGGCTTTAAAGCCGATGATACTTCGAAGTTTTGGAGAGTTAAAAGAAAAGAGTCAGCCATTGCGACAAGAAAATATCCTAGAAGAATCACAGCTAGAAACGGAAAAAGATAATAGTGAAATAATGGAAAATCCGAAATCATGCAATTCCCACTGGGACTCTGATTCTGGAGCAAGTAATACTGACCACACACAGGACTTTGAGGAtgtaatttatataaacaaagcGGATCCAGAAATCGTGCTGGACTTTTTAGCGCTTTTACGCGAGCATCCCAATCTGGTGGGTGGTCAACATCATTGTCATGGATATAATGGCGCTTTAAGTGCGGCCACTAAGCAATTCAATGAGAAATGGTCACGATCCATGACACTGCAGGACATGCAAAGGAGTGTGACTCTAATGAAGCGATGGTATCGCGCAGCGGTGAGAATGTGGAAAAGGAAGGGCTATGATAGCAAGAAGGCCGCTGCGATGAACGGCAATTGGCAGTTATATTTCGATACGTGCAAAGCATTAATACCACCGCGGGACTGCAAAAAGTTCTGCGAGCAATGTCAAAGAGAATTCAGCACTCCCGCACGCTATCGCCATCACGTGGTGCAGCACGAGGAACCCAAATTTAAGTGCCAGCTCTGCCCGCGCAAATACTACTTTGCTTCTATGCTGACGCATCACATGAAATTACACAACAATCAGCTAGACTATGTGTGTGAGGTGTGCGGCAAGTTGTTCTTACAGCGAAAGTACCTCAAGGAGCATGCGCGCACACATGTTCCCAATCGCCGGCTGAACTTTGTGTGCGACTTGTGCGGCAATACATTCTTATGGCGACAGACCTTGCGAAAACATAAAGTGGATATACATGGTTTCCCAAAGGCGAAAGCGCTTGCCAATGTGGCGAAGCGGCATATGAACACGGCTGTCGCTGGCAACGATGAGAACAAAGACGAAGAGGGCAGATTTTTGTCAAGGGGGAAGCGTGCTACGAAAAAGAATAGGAAGCGCTATTTGTGCAATATTTGTGGCAATACATTCGCATGGCGACAGGGCTTGTACAAACATAAACTGAAATTCCACGGTGAATTGAAGACGACGACTTGCACTGATGCCGATGAGGAGCTTAGTGACACGGGAGCGAGTTTACCGGAAGTGCGAAAAGCCCAAAGAATACGCTTAGTGTGCAACTTTTGTGACAAGACATTTGCGTGGCCGCAAGGATTGCACAAACATAGAAAGCAAATCCACGGCGTAAAGGTAAGAGTGCGTAATAGGAAAGCTAAGCCAAAGCTGCCCAGCAGTGGTAATGAGAATGAGCATAGAAATTTCGCTGACATCGATGCGCCCCAAGATTCCGAGGGCAGAATATTGTTAATGGATATGTTTGAAGTGATTCCGGATTTACTTGAGGACACAATAGCGCACAATGTCTCTTGTAACTACGACTAG
Protein Sequence
MACIMRDCGKTAYNNKQVQFFRLPTLPALRAKWFAACECDPAELPKAAAVCSLHFSADDIYLKGKRLRLHRNVLPKRHFQQRCPFAYSSVDPGGPAEFDSVGSGISSAQINETLSEQYFVPIYKQSKNSNTETKDTPTNLQQHVREHQYFKHDLPIISPEPEEIEFSQQRRSTCGYIEVSADNKTYTMLCQQCEQEFAIWNWVKFVQHDKEAHRNMQRAAGSADNSEETDIAITNDAHQSDTAMSLPLQKTINKDVLADNKQQREQQNVKEDWQDIVKEKPLAETESVGGDEYLTKQKTADEDVLAENKQQREQQNVEEDWQGIVKEKPQAETESVGGDEYLNKVCNSVSDSGASKADEVYYAVTLSKTKPEIVLDFLALLREHPILVGQRQQQQQEYNAALSVATEKFNRKWSRSVTVRVMQRSVSVIKHWYSATVRSRDKKDYYMKEKYQLYFDKCKTFMPKNLHPYDRKKYCELCERGFKVPSKYRTHMAMKHGKPKLNCHLCPRAYYFQWKLTNHIKAHKNQRDHVCEVCGMSFVQLRYLKVHAPYNNKQVQFFRLPTLPALRAKWLAACECDPAELPKAAAVCSLHFSADDIYLKGKRLRLHRNVLPKRHFQQRCPFAYSSVDPGGPAEFSSVGSGISSAQINETLSEEQYFVPIYKQSKNSNTETKDTPTNLQQHVREHQYFKHDLPIISPEPQEIEFSQQRRSTCGYIEVSADNKTYTMLCQQCEQEFAIWDWVKFVKHDKDAHRNMQWAAGSADNSEETDIAITNDAHQSDTAMSLPLQKTINKDVLADNKQQREQQNVKEDWQDIVKEKPLAETESVGGDEYLTKQKTADEDVLAENKQQREQQNVEEDWQGIVKEKPQAETESVGGDEYLNKQKTADEDVLAENKQQREQQNDEEDWLDNENLNKSCNSVSDSGASNADEEDGVINLKKTKPKIVLDFLALLREHPILVGRRGRLQQQQQEYDAALSVAMEKFNRKWSRSMTAQAMQGSVTVMQRWYRGAVRDKKDYSKNETYQLYFDKCKALFPRYAFDCKKYCEQCQKEFKVPSKYRTHMAMKHGKPKLKCHLCPRTYYFQWKLTNHIKAHKNQRDIVCEVCGMLFVQLRYLKVHARTHDLVERKVEERYRCDMCPKTYSSPGRLSRHKAVIHGLSNARVRGRGKVREEANMSTAANGKPKVRKPYECDLCDVSDDSKTYTMLCQQCEQEFAIWDWVKFVKHAKEAHSNLQLAFASALNHGGPSAMEECGGVFVITAAADANNAALALPLQNTLQKEVLGEKLEPRVAAVQDEVFAEALKPMILRSFGELKEKSQPLRQENILEESQLETEKDNSEIMENPKSCNSHWDSDSGASNTDHTQDFEDVIYINKADPEIVLDFLALLREHPNLVGGQHHCHGYNGALSAATKQFNEKWSRSMTLQDMQRSVTLMKRWYRAAVRMWKRKGYDSKKAAAMNGNWQLYFDTCKALIPPRDCKKFCEQCQREFSTPARYRHHVVQHEEPKFKCQLCPRKYYFASMLTHHMKLHNNQLDYVCEVCGKLFLQRKYLKEHARTHVPNRRLNFVCDLCGNTFLWRQTLRKHKVDIHGFPKAKALANVAKRHMNTAVAGNDENKDEEGRFLSRGKRATKKNRKRYLCNICGNTFAWRQGLYKHKLKFHGELKTTTCTDADEELSDTGASLPEVRKAQRIRLVCNFCDKTFAWPQGLHKHRKQIHGVKVRVRNRKAKPKLPSSGNENEHRNFADIDAPQDSEGRILLMDMFEVIPDLLEDTIAHNVSCNYD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01055266;
90% Identity
iTF_01055266;
80% Identity
iTF_01055266;