Basic Information

Insect: Neria commutata
Gene Symbol: Lip3
Assembly: GCA_963457695.1
Location: OY735246.1:47577798-47585139[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.022 2 9.5 0.5 2 23 415 436 414 436 0.96

2 16 0.061 5.6 8.1 1.1 1 23 442 465 442 465 0.90

3 16 3.9 3.6e+02 2.4 0.0 3 23 470 492 468 492 0.90

4 16 0.038 3.5 8.7 0.1 1 21 500 520 500 521 0.93

5 16 5.7e-05 0.0053 17.6 2.0 1 23 529 551 529 551 0.97

6 16 0.014 1.3 10.1 2.7 1 23 557 579 557 579 0.97

7 16 0.00055 0.051 14.5 2.6 1 23 585 607 585 607 0.95

8 16 5 4.6e+02 2.0 2.2 2 23 1036 1058 1035 1058 0.93

9 16 0.15 14 6.8 0.7 1 23 1082 1104 1082 1104 0.93

10 16 0.014 1.3 10.1 1.2 1 23 1112 1136 1112 1136 0.96

11 16 0.099 9.2 7.4 5.2 3 23 1142 1162 1140 1163 0.94

12 16 0.00041 0.038 14.9 0.2 2 21 1176 1195 1175 1196 0.93

13 16 0.0032 0.29 12.1 0.3 1 23 1204 1226 1204 1226 0.97

14 16 1.3e-06 0.00012 22.7 2.7 1 23 1232 1255 1232 1255 0.98

15 16 0.0004 0.037 14.9 2.4 1 23 1261 1283 1261 1283 0.98

16 16 0.00029 0.027 15.4 2.2 1 23 1289 1311 1289 1311 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.022	2	9.5	0.5	2	23	415	436	414	436	0.96
2	16	0.061	5.6	8.1	1.1	1	23	442	465	442	465	0.90
3	16	3.9	3.6e+02	2.4	0.0	3	23	470	492	468	492	0.90
4	16	0.038	3.5	8.7	0.1	1	21	500	520	500	521	0.93
5	16	5.7e-05	0.0053	17.6	2.0	1	23	529	551	529	551	0.97
6	16	0.014	1.3	10.1	2.7	1	23	557	579	557	579	0.97
7	16	0.00055	0.051	14.5	2.6	1	23	585	607	585	607	0.95
8	16	5	4.6e+02	2.0	2.2	2	23	1036	1058	1035	1058	0.93
9	16	0.15	14	6.8	0.7	1	23	1082	1104	1082	1104	0.93
10	16	0.014	1.3	10.1	1.2	1	23	1112	1136	1112	1136	0.96
11	16	0.099	9.2	7.4	5.2	3	23	1142	1162	1140	1163	0.94
12	16	0.00041	0.038	14.9	0.2	2	21	1176	1195	1175	1196	0.93
13	16	0.0032	0.29	12.1	0.3	1	23	1204	1226	1204	1226	0.97
14	16	1.3e-06	0.00012	22.7	2.7	1	23	1232	1255	1232	1255	0.98
15	16	0.0004	0.037	14.9	2.4	1	23	1261	1283	1261	1283	0.98
16	16	0.00029	0.027	15.4	2.2	1	23	1289	1311	1289	1311	0.95

Sequence Information

Coding Sequence: ATGATCTCCAATCACAATTATCCCGTCGAGGAACACACAGTGCATACCCCCGATGATTATGTGCTGACCATTTATCGCATACCAGACTCGCCCAAGCTGACGCAGGATAATAACTCATTGGCCACTTACAAAACGAAGCCCGTGGTTTTCCTGCAACACGGCATACTGTGCGCTTCGGACGATTGGATCATAAATGGGCCGGAGACCTCACTGGCGTATATGTTTGCCGATGCCGGCTATGATGTCTGGCTGGGAAATGCCCGTGGCAATACATATTCGCGCCAGCACAAGCACAAACATCCAGACTCCTCTGATTTCTGGAACTTTAGCTGGCACGAGATTGGCGTGTACGATCTGGCCTCGATGCTGGACTATGTACTCGTCGAGGCGAATGTGAGTGCGGTGCATTTCGTAGCACATTCGCAGGGCACAACCACGTTCTTTGTGCTTATGTCCACACTTCCAGACTACAATGCAAAAGTTAAGACGGCGCATCTGCTGGCACCCATCGCTTTCCTGCGAAATCACTCCTTCGTGCTGTCCAAATTCGGCAGCATTTTTCTGGGCTATCCCTCCTTTCTGAGTTGGATACTCGGTGGCATGGAGCTGCTGCCCATCACGAGCATACAGAAATTTATGTGTGAATATGTGTGCTCGGTGCAGTCCAAGTTCAAGTTTCTCTGTTCGGGACTGTTGGATTTCATTGGTGGCTGGGGCTCACGACACTTGAATCATACGCTGCTTTCTCACGTATGCGAAACCCATCCTGCAGGCGCTTCAACCACACAAATCATACACTATCTACAGTTGTACACTTCGGGTGATTTCCGGCAGTACGATCACGGCATTCAGCTGAACAGAAAATACTATCAGCAGGATACCCCACCTCACTATAACATCACCAACATTAGCACCTGCGTTAATCTCTACTATAGTGATAACGATTACATGTCCGCCGTGGAAGATGTGGAATATCTGGCAACGCTGTTGCCCTGTGCGGAACTCTATCGCATACCGTATGAAGACTGGAACCACTACGATTTTCTTTGGTCGATTAGTGTCAAAGAAGTGATAAACGATAGAATTATGGATCATATAGTAGCTTACGATATGACTAAGTTGACAGATGCTACACCCTCAACCTCAGCTGCCGCAGCAGCTGGTACCAAGGACTCCAAGGACGCAGCGCAGGCAGCCATACAAATGATGGTGCAAATCACCACGGACGGTGTGCCCAAGCTGCACTGTCCAGTGTGCAACAAGGCACTCGTGTCACTGAATGGCTATGTGAAACACGTGAAGAAGCACGAACCACCGGGCGGCTTCTTGTGCCGCTACTGTGAGGCACGCTATTGCTCCGAGGATGAGTTGAAGAGCCATCGTGAAGCTGTCCACACTATTCTGGCGTGCCGCATCTGCAAGGATGTGACTTTCGGCAGTGAGCCGGAGTACCGTGAGCATATACGTATTGTGCACAACGGCGTAGATCGCGAGATGTTCACCTGCGAGAAATGCGGCGCTGAGTACAAGACCATCGAACCTTATCGACGGCACTTAGACACACAGTGCGGCACAATCAAGCCACACAAATGCGATTTATGTCCGATGGCGTTCGTCACCAAGTATAATCTCAAGCAGCACAAGGAATCTCATACGGGAGCGCGTAATTTCTGCTGCAGCTATTGCGGCAAGAATTTCCTTCAGAAGGGACGTTTGGTCGAGCACGAGCGCTCACACACCGGCGAAAAGCCCTACAAATGCGATGTTTGCGGCAAATGTTTCGCGCACCGCGAGAGCATCGTTACACATTCCTCCATACACACGGGCATACGACTGGTAGAGTGTAAATGTTGCCTGTCACGTTTCTCCTGCTATTCCAATTTAATCAAACATCGACGCACGCGGCCAGAGACTTGCGGCCTGCCGGAGTATGATCCGCCGAAGAATCGCGTGCGCACGCATCGACCTAGAATTCCACCAACGCTTAATCCCACATCGGAGATTAAAGTGAGCAAcatgaataaaataataaaacctATGGATAAGGAGCAGCTAAAGAAGCCTATTAAAAAAGAGGCAATCAGCGAGCGGAAGACCAAGGCGACTGCACGCAAAGGCACGGGTCAGGCGAAAGTTCGCAGAAAAGCAgttaaaaaagacaaaaagacATCGGTGTCAGACAGTGATGAAGAGGAGGAAGAGCCGCACACCAGTAGTGAAGGAGATCTTTTCAATGAGCATGCTACACCGCAGCCGAAGCGACAAACACGCAGCTCGCTGGCGCAGCAAAACGGCTTTCTTCCTACACCGTCGCAGCCGGCGACTAAGGAGGAAAGTAAATTACTTTGGAGTGACACGGATTCAGAGGATTATGCTGATTTCGATCCCGCTGAAAGTGAAAGTGATGGCGagcaaaaagatttcaaaCTGCCAATGCCCAAACTGGCCATCAAACAGGAGGAATCTGAGCAACAACTGCCACATAATGCCGCTTTCGAATACAGTGACGCCAGTCAGTACGTGGATGCGGCCTTTAATGTGAAATCGGAAGAcgaaatgaatatttttaatgatAAGGATAAGTTATTGATTTCGCTGCTGAACGAAAATCAACTCGAAGGACCGGATCATGAGGAGAAACTACAGGATGTGAAAGCCAGCAAAGCTACCAGAAGTAGAGGCATTAAACGCGAAAAGGTCGAGCTGGAGAGATCGCTCCAGGAGGAGGCTAACGCACAAGCGGAACAGATACTGGAAGAGACAGAAATGATTTTGATTAAGGATGAGCATGCCAACACGCTGCACGAGGAGGATATGTTGGAATTAGCCAACGACAGTGATCTGACGCAATGCAAAATAATGCTAGAGGATGTCAAGAAACGCTATCCCAAACTCAAACAAGAGTCGAGCATTAAAGTGGCACGCAATACGGCTCCTTGCTTTGGTCTcacgaaaaagcaaaaacgcGCTGAGGAGTCCCCGCCCAAGCGCAAGTACCGAAAGCGCGGCGAACCCGATCCGAAGGCGCCAAAACGAATGGCCAAATTTAGTCAACAAGAACTAAAGGCGCGTCTCAAATTGCTTAAAAAGGAAGAGAGGTCTTGGTCCTGCCCGCACTGTATCAAAATCTATCATATGCGTAAGCCGTTCGAGAAGCATCTGCGCGATGATCATAAACGTCCCGAGGAGGAAATTCGCGATACATTCAAAATTGATGGCCTCGGCGTAATCAATGAGGACATCTTTAAGTGTCACATATGCGAGAAGATTTATTTGGTAGAGAAGCGTCTACTGGCGCACATCAATCTGCACGGCCCAGATGGCAATCTCACCTTCAAGTGTCCCTGTTATTGCAATCTGTACTTTGCCAGCAAGGATGAGGCCACTGCACATGCACAATCGCAACATCGCGATTTGCTCTTCTGCGAGTATTGCCAGAAATTCATGACCGGCCATGACAGCCTCAAGAACCACATGAAGAATCATCATTCCGAGAAAGGGCCGCGCAATGTACAACGCAATTTGGTATGCGACAAGTGCGGCAAGAAATTCTCCGGTCGCACATCGCTCTCGGATCATGTGCGCTCGGACTGTGGTCGCATGCCCCTCTATCCCTGCACCATTTGTGGCAAGCATCTGACTACGGCGGGCATACTGAAGACGCACCTGCTGCTGCACAAGGATGACACACCGTTCCAGTGCGACAAGTGCGGCAAAACGTTCAAAGTGAAGGCGCAATACAAGACGCACATCAAGACGAGGCACACCGACTTCAAGCCCTTTAAGTGCCATCTCTGTACCAAGGAGTACCCGTACCGCGAGAGCTTACTAACTCACATGACTGTGCATACGGGTATCAAGCGCTTTCTTTGCAATGGCTGCGGCAAACGCTTCACTTGCATTTCCAATCTGCAGGCGCATCGCAAAGTGCATATGGACACTTGCGGCATGCTGCCGCTCAACGCCAAGGCCACGCAGTACATGGGTGTGCAGAAGGGGAACTTGCTGTTAGGCGCGAAACCGGAGGCAGGCCTGGAATATAATGAGACAAATACGCTTATTGCTAAGGAGGTGCTGGATCGTGATTTGCCAATGGCACAGGAGTTGAATTTCCCCTCGGAACCATCGGCGCAACTAACTACTGTTCCACTGAACTATTCACAACAGCAGCCACCGTCGCACGTGGTGACGCTGGCATCCATGGTCATTCCACATTTCGGAGAGGACTCGCACTCCTCGGCGTATACTTAA
Protein Sequence: MISNHNYPVEEHTVHTPDDYVLTIYRIPDSPKLTQDNNSLATYKTKPVVFLQHGILCASDDWIINGPETSLAYMFADAGYDVWLGNARGNTYSRQHKHKHPDSSDFWNFSWHEIGVYDLASMLDYVLVEANVSAVHFVAHSQGTTTFFVLMSTLPDYNAKVKTAHLLAPIAFLRNHSFVLSKFGSIFLGYPSFLSWILGGMELLPITSIQKFMCEYVCSVQSKFKFLCSGLLDFIGGWGSRHLNHTLLSHVCETHPAGASTTQIIHYLQLYTSGDFRQYDHGIQLNRKYYQQDTPPHYNITNISTCVNLYYSDNDYMSAVEDVEYLATLLPCAELYRIPYEDWNHYDFLWSISVKEVINDRIMDHIVAYDMTKLTDATPSTSAAAAAGTKDSKDAAQAAIQMMVQITTDGVPKLHCPVCNKALVSLNGYVKHVKKHEPPGGFLCRYCEARYCSEDELKSHREAVHTILACRICKDVTFGSEPEYREHIRIVHNGVDREMFTCEKCGAEYKTIEPYRRHLDTQCGTIKPHKCDLCPMAFVTKYNLKQHKESHTGARNFCCSYCGKNFLQKGRLVEHERSHTGEKPYKCDVCGKCFAHRESIVTHSSIHTGIRLVECKCCLSRFSCYSNLIKHRRTRPETCGLPEYDPPKNRVRTHRPRIPPTLNPTSEIKVSNMNKIIKPMDKEQLKKPIKKEAISERKTKATARKGTGQAKVRRKAVKKDKKTSVSDSDEEEEEPHTSSEGDLFNEHATPQPKRQTRSSLAQQNGFLPTPSQPATKEESKLLWSDTDSEDYADFDPAESESDGEQKDFKLPMPKLAIKQEESEQQLPHNAAFEYSDASQYVDAAFNVKSEDEMNIFNDKDKLLISLLNENQLEGPDHEEKLQDVKASKATRSRGIKREKVELERSLQEEANAQAEQILEETEMILIKDEHANTLHEEDMLELANDSDLTQCKIMLEDVKKRYPKLKQESSIKVARNTAPCFGLTKKQKRAEESPPKRKYRKRGEPDPKAPKRMAKFSQQELKARLKLLKKEERSWSCPHCIKIYHMRKPFEKHLRDDHKRPEEEIRDTFKIDGLGVINEDIFKCHICEKIYLVEKRLLAHINLHGPDGNLTFKCPCYCNLYFASKDEATAHAQSQHRDLLFCEYCQKFMTGHDSLKNHMKNHHSEKGPRNVQRNLVCDKCGKKFSGRTSLSDHVRSDCGRMPLYPCTICGKHLTTAGILKTHLLLHKDDTPFQCDKCGKTFKVKAQYKTHIKTRHTDFKPFKCHLCTKEYPYRESLLTHMTVHTGIKRFLCNGCGKRFTCISNLQAHRKVHMDTCGMLPLNAKATQYMGVQKGNLLLGAKPEAGLEYNETNTLIAKEVLDRDLPMAQELNFPSEPSAQLTTVPLNYSQQQPPSHVVTLASMVIPHFGEDSHSSAYT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -