Basic Information

Insect: Neria commutata
Gene Symbol: Rreb1
Assembly: GCA_963457695.1
Location: OY735249.1:33921518-33927820[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0064 0.59 11.1 0.6 1 21 256 276 256 278 0.96

2 14 0.00037 0.034 15.1 0.2 1 23 288 310 288 310 0.98

3 14 2.6e-05 0.0024 18.7 7.5 1 23 316 338 316 338 0.98

4 14 0.38 35 5.6 5.9 2 19 619 636 619 640 0.91

5 14 0.019 1.7 9.7 0.2 1 20 683 702 683 703 0.93

6 14 0.0097 0.9 10.6 0.1 1 23 862 884 862 884 0.97

7 14 4.7e-05 0.0043 17.9 1.1 1 23 894 916 894 916 0.99

8 14 0.00091 0.084 13.8 2.0 1 23 922 945 922 945 0.97

9 14 0.0033 0.3 12.1 2.0 1 23 1290 1313 1290 1313 0.95

10 14 9.5e-05 0.0088 16.9 0.3 2 23 1648 1669 1647 1669 0.97

11 14 0.16 15 6.8 6.3 1 23 1675 1698 1675 1698 0.97

12 14 5.2 4.8e+02 2.0 2.5 1 23 1820 1843 1820 1843 0.92

13 14 0.0093 0.86 10.6 0.5 3 23 1896 1916 1894 1916 0.96

14 14 0.0015 0.14 13.2 4.8 1 23 1922 1944 1922 1944 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0064	0.59	11.1	0.6	1	21	256	276	256	278	0.96
2	14	0.00037	0.034	15.1	0.2	1	23	288	310	288	310	0.98
3	14	2.6e-05	0.0024	18.7	7.5	1	23	316	338	316	338	0.98
4	14	0.38	35	5.6	5.9	2	19	619	636	619	640	0.91
5	14	0.019	1.7	9.7	0.2	1	20	683	702	683	703	0.93
6	14	0.0097	0.9	10.6	0.1	1	23	862	884	862	884	0.97
7	14	4.7e-05	0.0043	17.9	1.1	1	23	894	916	894	916	0.99
8	14	0.00091	0.084	13.8	2.0	1	23	922	945	922	945	0.97
9	14	0.0033	0.3	12.1	2.0	1	23	1290	1313	1290	1313	0.95
10	14	9.5e-05	0.0088	16.9	0.3	2	23	1648	1669	1647	1669	0.97
11	14	0.16	15	6.8	6.3	1	23	1675	1698	1675	1698	0.97
12	14	5.2	4.8e+02	2.0	2.5	1	23	1820	1843	1820	1843	0.92
13	14	0.0093	0.86	10.6	0.5	3	23	1896	1916	1894	1916	0.96
14	14	0.0015	0.14	13.2	4.8	1	23	1922	1944	1922	1944	0.99

Sequence Information

Coding Sequence: ATGCTTGCAACGCAAATCACCACAACTGCAGCCAATCCGCCGCAGCAACAGACGCTCGACAACAGTCCGGCGACGCTCAATTCGCCCATCAAAATGGAGCGACGCGATTCCACCACATCGGAATCCTCGCTGGAGCATTTGGATCTGGGCCGCACACCAAAGAAACTCAACTCACACTCGTCGGTCACATCGACGCCACACGTGGCGGCCGTCAATAGCGCATCAGACGCGCCGGCAGCAACGCCCGACGCTAGCAACGACGCCAGCGAGCTGGAGAAACACACGTCGGCGGCAGCGGCCCGCCTGCACGACTCAGATGATACGAACGATTATGATGAGGACGATTCGGCGGACgagaagcagcaacaaagcgcCGCCGCCGCACGCTCGCAGCGACACCACAAACGGCGCAGCAGTGGGCGACTGGACAAGCGCGCCAGCGTGCAGCTGGAGTACAATGCGGACAATCCTAATTCACTGCGCAAGAAGTTCCGCTTCAATCGCAGCGGCCTGGACGCGGTCGCCAACAACGAATCCGGCTTCGTGGATGCCAGCTGCCTCAGCCAGTACTTGAATGCATCGGCAGTGTCCGCAGTATCCGCATCAGCGGCAGGGCAGCAGCCACACACCGCCTCGCCGCACACCTCCGCCAGCGCGTCGCACAGCTCGTCGGCGTCATCGTCACCGCATGGCGCCGGCGCTGACGGCGGCATCAACTCCGCCTCCAGCCCGGAGTCGGGCATCGGCGAGCGCGAGGACATGAAATATGTGTGCCCCATATGCGAGGTGGTGTCAGCCACGCCGCACGAGTTCACCAACCACATTCGCTGCCACAATTACTCCTCCGGCGACACGGAGAACTTCACGTGCCGTATTTGCTCCAAGGTGCTGTCGTCTGCGTCGTCGCTGGATCGTCATGTGCTCGTGCACACCGGCGAACGGCCctttaattgcaaatattgccACCTCACCTTCACCACCAACGGCAACATGCACCGccacatgcgcacacacaagcagcaTCAGCACAATCATCATCATCGCCGCAACTCGAATGGAACCAAGAACAACAtcagccacagccacagccacaaccacaaccacagcaacggcagcagcacaacaacagctgccgGCAACACCTTGTCTGGtcgcggcggcggcggctccAGCTCGAACCTGCAATTAACCAACGGCATCGCGAGCAGCGAAGGTGTCAAAACAGCATCAGCGGCTGTGCTCTCTGCTTTgatggcggcggcagcgaaagcaacaacaaccacagcaacagcagcagcagcagcagcagccactgAAGTTGCAGCTGCTAATGGCAAACGCTTAAATGGCAGCGGCGTAGAAAGTTACGAAAGTGATGGCGGTTGCTCAACGGATTCATCAAGTGCCATCAGCCAAAGCTCAAATAATCATAATCACACcaactataacaacaacaacaaccataataataataacaatgttaaaacaaacaacaataatcgtaacaacaacaacaataacaacacattGGCGCACAATTTCAAACGCAAAAACAGCGATCATCTCGACGCTGATGACGATATTGCGTCGCTGAAGCGACGCGTGAAGACCacaattaacaacaacaacaacaacaacacaataatCGTTGCCAGCGAAGAGAACCGCTTAGCCGCCACGGGAGCGCACGCCGGCACAGCAGACATGCCCTGCGCCGCAGACGCCGATGACGATGCCGCTGAGCAGCAGTCCTCGACGGCGCTGCTGGACTGTCCCGTCTGCCATGCGGTCGACTTCGAGAGCTTGCTGTCGCTGGCCGCACACATGGACGCGGAGCATGCAGAAATACCCGCCAAGTGCCGGCACTGCGACGTGGTGTTCCGCTCGCATCGCCAGCTGAACGTGCATCCGTGCTCGCACAACAGGCCGAGAATCGTGCCCGGCTTTAAGGATCTCACCTTCGTGGACTTTTCCAGCGAAAAGTTTCCATTGATTGCCAAGTCACTCTGTGAGCAGTCGCTGCGCACGGCCGTGTCCAGTCAACGCTACGAATGTACCAAATGTGGCCGTGCGTTTCCCTGCAATAGCGCGCTCGAGATGCACGTGGACGATTGCGCCGCCGaggcactgcagcagcagcagcttaagTCTACCCAGGACGCCTTTGCAATGCTGCTGAATAATCGCAAGCGACGCAGCTTGAGCGAGAGTTCTGCTGGCGCAGATGATATGGACGAGGAGGAGCAGCACGGACGCAACGAGTTCCTGCGTCAGGTGTACCTGAAGAACAAATCGCTCTTGTCGCCCCAGCACTCGAACGGCGAACACACTGATGCCGCCATCAAGTTCGAGACGGATGGCGAGCAGCAACACCTCATGTCGCAGCAGTCGCACGACTCCAAGGACCTCGCCGACATACAGTCCATTCTGAATATGACCTCGTCGTCGTCCACCTCGAATTTCCTGAAGAACTTCGAGCAGTCGGTGAACACGCCGTCCAGCAACTACAGCCTGGACAAGGACGAGGAGGAGGCTCAGGACGCCTTCACCTCCGAGTTCCGCAAAATGAAGCTGCGCGGCGAGTTCCCCTGCAAGCTCTGCTCCGCTGTGTTTCCGAATCTGCGCGCGCTCAAAGGCCACAACCGCGTACACTTGAGCGCTGTCGGGCCCGCCGGCCCCTTCCGCTGCAACATGTGCCCGTATTCGATTTGCGACAAGGCGGCGCTGGTGCGGCACATGCGCTCGCACAACGGCGATCGGCCGTACGAGTGCGCCGTCTGCAACTACGCCTTCACCACCAAGGCCAACTGCGAGCGGCATCTGCGCAACCGCCACGCCAAGACAACGCGCGACGAGGTGAAGCGCGCCATCATCTACCACCCCTCGGAGGACTCGTCGTGCGACGACGCCGCCAAGAAGCTGCACATGTTCTCCTCGCCGGACTTCGATGACGACGGCGACTTCTCGTACCAGCATCAGCAGCCCAAGGACCGCTCCACGCCGGTGTCGCACCTCAAGGATATGCTCACTGCCAGCGACGGCCCAGCCGCAAAACCGATGAAGATTCAGGTGAAACGACTGGATCAGCTGATAGACAAGAACAGCGGCAGCTTCAATGAGCACTTCGACGATGCCCCCGCAGAGCAGCAGGTACATGCGGTTGAGTCGACCGCGCCCATGGATCTGAGCATGGACGTTCTGGATCTGAGCAAGAAACCAACCCTCAAGAGTACCACACCCAAGGATGCCACAACACGCTCTGCCACACCACCCGCAGCGCCGCTCCTGGCAGAGATCGGCAGCACAGGCAAATCCGCTGTAGATGATGCGGAAATCGATCTGAGCAAGGAATTCTCAatgtcgcagcagcagcagcagcagttcatGAACGAGGCCACTGCGCCCTATCTACAGTTTTACCGCAACCTGCTGTTTCCGCCGCTCAATCCCTTCTTCCTGCAAAACTCCTTTCTGCCCAATAATCTGGGAGAGTTGCAGAAAATCGCGCCTCTCATGAGTCGCATGTTTGGAGGCGCTGCAGGCGCGGGACCCCTGCCTAACATGGACGCCCAGAAGCCGAATGCCAACTCTGCACCGCTCGCGGGCTCCGTAATGCTGCCGCAGGTGAGTCCGCTCATGCCGGACAAATCCGGCGCAAATTCGCTCTGCTCGCCCGCCGCTGGCGCCATGAGCTCCATGCTGCCCAAGGGCCTGCCGTCGCCTGCGCCACTCACCGCCACGCTCAACATACCGCGACACTCGCATATACCGTCTACTGTGCTGCCGGGCGGACCCGTAAAGATGGTCATCAAGAACGGCGTGCTTATGCCCAAGCAGAAGCAGCGCCGCTACCGCACAGAGCGTCCCTTCGCCTGCGAGCACTGCTCCGCGCGCTTCACGCTGCGCTCCAACATGGAACGCCATGTCAAGCAACAGCATCCGCAATACTACGCGCAGCGCCAACGTAGCGGCCACCACATCATGCGCGGACGCGGTGCCAGCAGCGGAGCGGCCGTCAACAACATCACGCATCTGCAGGCAGCATTCGCGCAGGCGCACAACAACACACCCGGCACCCTGGGCCAACAGAACACCATCTCGGAGCAGGTCAAGTACGCCATACTGGCGCAGCAGCTGAAGGCGCGCAAGGACACCGACCTGTTGCAGCAGGCGCTGGCGCACGGCTCCAGCAGCGTAGCCGCGAACCCTATGCTGCTCGGCGCCACGGCTGGcacgctgccgccgctgcccaATGGTCAGCAGTTCGGCTTTGCACACATGAACAGTGCGAACGCAAATGGCTCTCCAATGGAGGACGACGAGCCCAAATTGATCATCGACGAGGACGAAGATGACGATGACGATGACGGTGTGGAGGAAATAGCCGACGACAACGACGAGGAAGAAGAGGAGGATGGTATGCTAAATGAAAGTATTGCCGAGGAGCCACTGCCAACACCGCTGGAGGATCTGCAGCCCAAAGCCGCAGAGTCCAACGCAGGTGCCAAGAAGGTGGCTGAAACCATACTGGAACAGGCAATAAAAGCGGGTCCAAACAGCGCCAGCTCGCTAGCCAAGCCCGAgcccgcagcagcaacagcgataGCAGCGCCACCTGCCAACACCATGAAGTCATTGATAGCGCAAGCGGAATCGGTGGGCAAGTCACTCAAAGAGGTTGCAAGTTCAGCGTTCAAGGATGAGTCGCCCGATCTGGTGCCAGTGTCAAAGCTCGTGGACAATGCCACCAACAACGCGGTGTCCTTCAACAGCTACTTCCGGCCCAGCAGCGATGTGGTCAATCACATGGAGCAGAGCGATGAGGAGGGTCTGGTCGCCTCGGGCAGCGCCAGCGAGAGCAACAACTCCGGCACCGAAGACATCGCCACAGCGGCCGAGCCCAAGAAGAAATCCGCCTACAGTCTGGCGCCGAATCGCGTCTCCTGCCCCTACTGCCAGCGCATGTTCCCCTGGTCGAGCTCGCTGCGCCGCCACATACTCACGCACACCGGCCAGAAGCCCTTCAAGTGCTCGCACTGCCCGCTGCTCTTCACCACGAAGAGTAACTGCGATCGCCACTTGCTGCGCAAGCACGGTAACGTCGAGTCCGCCATGTCTGTGTACGTGCCCACCGAAGACGTCAGCGAGCCGATACCAGTGCCCAAGTCCGTCGAAGAAATCGAGCACCAGCAACGGCAACGCGAAGATGAGGAACGCAAACGGAAGAGCGCGCAGGCCCAATTGGAGCGCGAGCGACGAGAGAAGGAGcagcgacaacagcagcaacagcaacaacaccagcaactGCAGCTacagctgcaacagcagcaggaacaagagcaacaactgCTGAGACAAATCGCCGTTGCTCAATTCAGTCAGCTAAATGTGGCCGCCGCTGATAGCAGCCCCAAGCCAGAGGCCAACAGCAGCACCTCATCCTCCTCAGAGCTGCCCTACAAGTGCCACCTCTGCGAGAGCTCGTTCGGCGAGCGCCCACTCTGCCTGGAGCACATCAGAATGCAGCACGCACAGGACTtcgcgctgctgctggccaaGGGCGCCATCGACACTGAGGCCGAACCCAGCCCTGTGCATCTGCTCGACGACGACGAGCGACGCCCCGGCGAGGAGAACGGCAGCTCACGCGGCAAATATCCCGACTACAGCAATCGCAAGGTGATCTGTGCCTTCTGCGTGCGGCGCTTCTGGTCCACCGAAGATCTGCGTCGTCACATGCGCACGCACTCGGGCGAACGGCCATTCCAGTGCGAAATTTGCCTGCGCAAATTCACGCTGAAGCACAGCATGCTGCGTCACATGAAGAAGCACAGCGGTCGCCACCACAACGGACTCGCATCCGGCGATCTGTCGGCCGCCGGCAACAGCGGCTCCGATTTCTCGGACGACGAGCAGTCGGCACCCAACAACACGAACAGCAGCAATATCGGCGCCAACACCAGCCTGCTGCTGAACGCCATGCGCGCTCCCAAGATTCAGGAACTGTTGAGCAAGGCCAACGGTCGGCTCGGCGGCGAGCAAAAGGAGAACATTGCCGATGAGCCGTGCAACAGCCAGACCGATCTGATCGGCAAACTGCTCGGCATCAGCGATCAGGGCATACTCAACATGTTGCTCACGTCGGCCGATGAGGCGGCCAAACTGTTGGGCGTGGAGAAATAA
Protein Sequence: MLATQITTTAANPPQQQTLDNSPATLNSPIKMERRDSTTSESSLEHLDLGRTPKKLNSHSSVTSTPHVAAVNSASDAPAATPDASNDASELEKHTSAAAARLHDSDDTNDYDEDDSADEKQQQSAAAARSQRHHKRRSSGRLDKRASVQLEYNADNPNSLRKKFRFNRSGLDAVANNESGFVDASCLSQYLNASAVSAVSASAAGQQPHTASPHTSASASHSSSASSSPHGAGADGGINSASSPESGIGEREDMKYVCPICEVVSATPHEFTNHIRCHNYSSGDTENFTCRICSKVLSSASSLDRHVLVHTGERPFNCKYCHLTFTTNGNMHRHMRTHKQHQHNHHHRRNSNGTKNNISHSHSHNHNHSNGSSTTTAAGNTLSGRGGGGSSSNLQLTNGIASSEGVKTASAAVLSALMAAAAKATTTTATAAAAAAATEVAAANGKRLNGSGVESYESDGGCSTDSSSAISQSSNNHNHTNYNNNNNHNNNNNVKTNNNNRNNNNNNNTLAHNFKRKNSDHLDADDDIASLKRRVKTTINNNNNNNTIIVASEENRLAATGAHAGTADMPCAADADDDAAEQQSSTALLDCPVCHAVDFESLLSLAAHMDAEHAEIPAKCRHCDVVFRSHRQLNVHPCSHNRPRIVPGFKDLTFVDFSSEKFPLIAKSLCEQSLRTAVSSQRYECTKCGRAFPCNSALEMHVDDCAAEALQQQQLKSTQDAFAMLLNNRKRRSLSESSAGADDMDEEEQHGRNEFLRQVYLKNKSLLSPQHSNGEHTDAAIKFETDGEQQHLMSQQSHDSKDLADIQSILNMTSSSSTSNFLKNFEQSVNTPSSNYSLDKDEEEAQDAFTSEFRKMKLRGEFPCKLCSAVFPNLRALKGHNRVHLSAVGPAGPFRCNMCPYSICDKAALVRHMRSHNGDRPYECAVCNYAFTTKANCERHLRNRHAKTTRDEVKRAIIYHPSEDSSCDDAAKKLHMFSSPDFDDDGDFSYQHQQPKDRSTPVSHLKDMLTASDGPAAKPMKIQVKRLDQLIDKNSGSFNEHFDDAPAEQQVHAVESTAPMDLSMDVLDLSKKPTLKSTTPKDATTRSATPPAAPLLAEIGSTGKSAVDDAEIDLSKEFSMSQQQQQQFMNEATAPYLQFYRNLLFPPLNPFFLQNSFLPNNLGELQKIAPLMSRMFGGAAGAGPLPNMDAQKPNANSAPLAGSVMLPQVSPLMPDKSGANSLCSPAAGAMSSMLPKGLPSPAPLTATLNIPRHSHIPSTVLPGGPVKMVIKNGVLMPKQKQRRYRTERPFACEHCSARFTLRSNMERHVKQQHPQYYAQRQRSGHHIMRGRGASSGAAVNNITHLQAAFAQAHNNTPGTLGQQNTISEQVKYAILAQQLKARKDTDLLQQALAHGSSSVAANPMLLGATAGTLPPLPNGQQFGFAHMNSANANGSPMEDDEPKLIIDEDEDDDDDDGVEEIADDNDEEEEEDGMLNESIAEEPLPTPLEDLQPKAAESNAGAKKVAETILEQAIKAGPNSASSLAKPEPAAATAIAAPPANTMKSLIAQAESVGKSLKEVASSAFKDESPDLVPVSKLVDNATNNAVSFNSYFRPSSDVVNHMEQSDEEGLVASGSASESNNSGTEDIATAAEPKKKSAYSLAPNRVSCPYCQRMFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNVESAMSVYVPTEDVSEPIPVPKSVEEIEHQQRQREDEERKRKSAQAQLERERREKEQRQQQQQQQHQQLQLQLQQQQEQEQQLLRQIAVAQFSQLNVAAADSSPKPEANSSTSSSSELPYKCHLCESSFGERPLCLEHIRMQHAQDFALLLAKGAIDTEAEPSPVHLLDDDERRPGEENGSSRGKYPDYSNRKVICAFCVRRFWSTEDLRRHMRTHSGERPFQCEICLRKFTLKHSMLRHMKKHSGRHHNGLASGDLSAAGNSGSDFSDDEQSAPNNTNSSNIGANTSLLLNAMRAPKIQELLSKANGRLGGEQKENIADEPCNSQTDLIGKLLGISDQGILNMLLTSADEAAKLLGVEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -