Basic Information

Insect: Neria commutata
Gene Symbol: Kr-h1
Assembly: GCA_963457695.1
Location: OY735246.1:46504316-46508104[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.0047 0.44 11.6 3.0 1 23 174 196 174 196 0.98

2 8 2e-06 0.00019 22.2 0.5 1 23 254 276 254 276 0.99

3 8 2.4e-05 0.0022 18.8 2.3 1 23 282 304 282 304 0.98

4 8 7.8e-06 0.00073 20.3 1.8 3 23 312 332 310 332 0.98

5 8 8.2e-07 7.6e-05 23.4 0.8 1 23 338 360 338 360 0.98

6 8 0.00015 0.014 16.2 1.5 1 23 366 390 366 390 0.99

7 8 0.69 64 4.8 3.7 1 23 396 418 396 418 0.94

8 8 1.4e-06 0.00013 22.6 0.5 1 23 424 446 424 446 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.0047	0.44	11.6	3.0	1	23	174	196	174	196	0.98
2	8	2e-06	0.00019	22.2	0.5	1	23	254	276	254	276	0.99
3	8	2.4e-05	0.0022	18.8	2.3	1	23	282	304	282	304	0.98
4	8	7.8e-06	0.00073	20.3	1.8	3	23	312	332	310	332	0.98
5	8	8.2e-07	7.6e-05	23.4	0.8	1	23	338	360	338	360	0.98
6	8	0.00015	0.014	16.2	1.5	1	23	366	390	366	390	0.99
7	8	0.69	64	4.8	3.7	1	23	396	418	396	418	0.94
8	8	1.4e-06	0.00013	22.6	0.5	1	23	424	446	424	446	0.98

Sequence Information

Coding Sequence: atggtTTACTACCAATCCACTCCACTGATAGTGAAAACGGAACCACCTAGTCAAGCACAGTTCTGTACACCGTTAGCCACACCTGGCGCTGCACACAACACGGCAGCATCCTCAACGTTGGTGCCACAACAGCTGCATCAGCTGCAATCGCAACATGCGCCACACAACTACAGCATCAGCAATGGCGCAATCATTCTGCAACAGGCGCCGCAGTCCGCAGCcgcaccaacagcaacaagtaTTAACAATGTGCACATGCAGAATTTTTCGAGCGCAGCACAAAATCTCAACTTTTTGAGCAATATCAAAGCGGAGCTATTGCCGCCCAGCATAACCGTGTACGCCACCTCTTCCAGCTCCAATGTTAGCGTCCCCGCTCCAACCTCTGCACACGCAACACTGCAGCCCTCCGCGCCAACCGCCTCCCTCCCAATCAGTGCCACGCCCAAtgctggcggcagcagcacaacCACAAACGCCACAGCTGCAGGCCGCAAAACGGCCGCAAACAAGCCGCAATTTAAGTGCGAACAGTGCGGCATGACCTTCGGCAGCAAATCGGCGCACACCTCGCACACCAAGTCGCACGCGAAAAATGGCGACTTGGCCGCCTTGAATGGGCTCGCTGGGCCCAGCACcagcgctgccgccgccgccgccgctgcggCGCTCGAGCTGAATGAGGCGGGCGTGCCCTTGGGCATACCGAAGACGCCGCAGATCAAGCCGAACGCCAGCGGCGTGCCCGGCAGCGATCCGTACCAGTGCAATGTCTGCCAGAAGACATTCGCTGTGCCAGCAAGACTGATTCGCCATTACCGCACCCACACCGGCGAGCGACCCTTTGAATGCGAGTTCTGTCACAAGCTGTTCAGCGTCAAGGAGAATCTGCAGGTGCATCGCCGCATTCACACCAAGGAACGTCCGTACGGCTGTGATGTGTGCGGCCGTGCCTTCGAGCATTCGGGCAAGCTGCATCGCCACATGCGCATACACACGGGCGAGCGACCGCACAAGTGCGCCGTCTGCGAGAAGACGTTCATCCAGTCCGGCCAGTTGGTCATACACATGCGCACGCACACGGGCGAGAAACCCTACAAGTGCCCCGTGGAGGGCTGCGGCAAGGGCTTCACCTGCTCCAAGCAGCTGAAGGTGCACTCACGCACGCACACCGGCGAGAAGCCCTACCACTGCGACATCTGCTTCCGTGATTTCGGCTACAATCACGTGCTGAAGCTGCATCGCGTGCAGCACTACGGCTCCAAGTGCTACAAGTGCACCATATGCGACGAGACGTTTAAGAGCAAGAAGGAGATGGAGGCGCACATCAAGGGCCACGCCAACGAGATGCCCGACGACGATGACGAGGCTGCTGTTGGAGCCAGTGCCAGCAGCGGCGGACAGACGAGCTCTACCTCGACCAGTGGCTCGGGCGGTGAAACCACATCCGCACCGGGCTCACCGCAATCGCCCAGCAACGGTGTGAATACCAGTGCCAGCGTGCGCCGGCCCAGGAAACCAAAACAGCGTGTTGCTGCCATCGCCGCTCTGGCGCCGCTTTCGCCCAGTTCGCCGCGTTCGACGCTTTCGCCTTCCTCGTCCAGGGCATCCGCCTCGCGGCTTTCCGCCGGCTCGCCAGCCTCGTCCATCGCATCACCCGCAATGTCCATCATAATTGAGACTGATCAGCACAGCCACGACAGTGGCGTCGCTTCCACTAGCAATAATCGTCAGCTGTGTGAACTTGTCAACGCcgccgcaacaacaatgctGGGCATGCACAATCCGAGTGCCTATTGCCTGGAGGAGCTGCCCACAGATCTGAGcatacaacagcagcagcaacaccagcagcagcagtctccaacaacagcaaactattaccagcagcagccacatcagcagcagcagaagctgcaagccaacaacaactcagTGTACCAACAGTCGCAGTCTTCGTACAACTACATGCGCCACTCTCCAGTGCCACTGGCACCCGCGTCGCCTCTGCTAATGCCATTTGATCAGCAACAATCGCCACAGCATTATCAGCAGGGCGGCCTGGAGCCGCCCACCATTAATCCGGCGCTGGTGGAGGCCGCCTCCATTGCGAGTCGTCACGCTATGCTGGAGCCACGCGAGGAGGATGTCACCGCCGCGCTGCAGATCATGCAACTGACGCGCACACACAAGcctacacaacaacaacaacagcaaccacacTTGAACTCACCACAATTGCAAGCAATTCAACACCCTACACCCACTGCGTCGCCAAATTACATCACAACCCAGCAGCAGCGCCCTCTGTTGATCAGCGATCTGGCAAACTACGACGACACACACGAGGCCAACGAACTGATCGAGCATTATAAGCGGGGTGATTTGGCGCGCCACGGCATACACAAAGGCTACGCGCCGGTGCCCAAGTTCGAGCCTGCCCTGCCCAACAATGAGAATCTGGTGCGCCAAGTGGAAGCTGCACTGGCGCCGTTGCGCTCCTCCACCGAATCGCCGGAGCGTTCATCCTCGCCGGAAAGTGACTCCATGATGATGGCCGATCGTGACGTTATGACTCTGCCTTTGCGCAAGCGCAAACTCTACATGAACGAGGGGCCTAACGAGACGCCCAAGCCGGACAGCCAAGCCAACAATAGCGGCGGTCTGGATGCAaccggcaacaacaatagcggAAATATCAATGGCGTCGGCATAAATGCGGACTTGGGCAACAAAGTGATGCGCATGAATTCGGTCATACAATTCGCCAAGGCTTCATAA
Protein Sequence: MVYYQSTPLIVKTEPPSQAQFCTPLATPGAAHNTAASSTLVPQQLHQLQSQHAPHNYSISNGAIILQQAPQSAAAPTATSINNVHMQNFSSAAQNLNFLSNIKAELLPPSITVYATSSSSNVSVPAPTSAHATLQPSAPTASLPISATPNAGGSSTTTNATAAGRKTAANKPQFKCEQCGMTFGSKSAHTSHTKSHAKNGDLAALNGLAGPSTSAAAAAAAAALELNEAGVPLGIPKTPQIKPNASGVPGSDPYQCNVCQKTFAVPARLIRHYRTHTGERPFECEFCHKLFSVKENLQVHRRIHTKERPYGCDVCGRAFEHSGKLHRHMRIHTGERPHKCAVCEKTFIQSGQLVIHMRTHTGEKPYKCPVEGCGKGFTCSKQLKVHSRTHTGEKPYHCDICFRDFGYNHVLKLHRVQHYGSKCYKCTICDETFKSKKEMEAHIKGHANEMPDDDDEAAVGASASSGGQTSSTSTSGSGGETTSAPGSPQSPSNGVNTSASVRRPRKPKQRVAAIAALAPLSPSSPRSTLSPSSSRASASRLSAGSPASSIASPAMSIIIETDQHSHDSGVASTSNNRQLCELVNAAATTMLGMHNPSAYCLEELPTDLSIQQQQQHQQQQSPTTANYYQQQPHQQQQKLQANNNSVYQQSQSSYNYMRHSPVPLAPASPLLMPFDQQQSPQHYQQGGLEPPTINPALVEAASIASRHAMLEPREEDVTAALQIMQLTRTHKPTQQQQQQPHLNSPQLQAIQHPTPTASPNYITTQQQRPLLISDLANYDDTHEANELIEHYKRGDLARHGIHKGYAPVPKFEPALPNNENLVRQVEAALAPLRSSTESPERSSSPESDSMMMADRDVMTLPLRKRKLYMNEGPNETPKPDSQANNSGGLDATGNNNSGNINGVGINADLGNKVMRMNSVIQFAKAS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -