Ncom011040.1
Basic Information
- Insect
- Neria commutata
- Gene Symbol
- -
- Assembly
- GCA_963457695.1
- Location
- OY735247.1:2757966-2769099[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.87 80 4.4 2.5 2 23 192 214 191 215 0.93 2 22 0.0027 0.25 12.3 1.6 1 23 246 268 246 268 0.96 3 22 7.4 6.8e+02 1.5 1.0 2 19 457 474 456 475 0.93 4 22 0.0015 0.14 13.2 2.1 1 23 511 533 511 533 0.98 5 22 7.7e-05 0.0071 17.2 0.6 1 23 541 563 541 563 0.98 6 22 0.00012 0.012 16.5 0.3 2 23 572 594 571 594 0.95 7 22 0.00093 0.086 13.8 0.0 3 23 602 622 601 622 0.96 8 22 0.00032 0.03 15.2 0.6 2 23 631 653 630 653 0.95 9 22 0.65 60 4.8 0.5 2 23 662 684 661 684 0.87 10 22 3e-05 0.0027 18.5 5.0 1 23 690 712 690 712 0.97 11 22 7.5e-05 0.007 17.2 7.7 1 23 718 741 718 742 0.97 12 22 0.18 17 6.6 0.6 2 23 968 990 967 990 0.93 13 22 0.58 54 5.0 0.2 6 23 999 1016 999 1016 0.98 14 22 0.0091 0.84 10.7 2.4 1 23 1022 1044 1022 1044 0.95 15 22 0.00068 0.063 14.2 1.0 3 23 1060 1081 1058 1081 0.95 16 22 0.00015 0.014 16.2 0.5 2 23 1111 1133 1110 1133 0.97 17 22 7.4 6.9e+02 1.5 0.5 2 23 1140 1161 1139 1161 0.83 18 22 0.00013 0.012 16.5 0.5 2 23 1203 1225 1202 1225 0.97 19 22 4.2 3.9e+02 2.3 0.4 2 23 1232 1253 1231 1253 0.83 20 22 0.00036 0.033 15.1 0.3 3 23 1296 1317 1294 1317 0.96 21 22 0.00013 0.012 16.5 0.5 2 23 1383 1405 1382 1405 0.97 22 22 8.4 7.7e+02 1.3 0.6 2 23 1412 1433 1411 1433 0.86
Sequence Information
- Coding Sequence
- ATGCTAGAGAAGTACTTCTCTTGGTTGAAGgtcGATGATATCTACAGTGTAGATAGTTGCATCTGTCATCAGTGCTGGCAAGCATTGCTCACTTTCCATAACTTCTATGTACAAGTGGAGCGCGCTCATAAGATTTTAGAGCGCGACCTGAAACCAACCGAGAACTTCGTACTTGCAAAGCAGCTATCGCTCGCCGAAGCAGCACCAATGGACGAAGAAGATACAGAAGCAGCCATCGgccaaattaaaatagaaCCCGAAACAATATACTCGGAGATTGTGATAGCCGAGCGTAGAGAGAGCCATCCGCTCCCTCAAGACCCCAAAGTCGTAGAGTTGTATGCTCCTACAGTAATGGACGAGAACTTAGATTTGGTGGAAGCACTGCAGGCTGGGAATCTATCGGAGGCAAAGGGAGAACCGGATGAGACGTTTGACGACGATTTGGAGTTCATTTCAGAGGCGGACAACCCTGTGGCATCGAAGAAACCATCGAAGATTAAGCTTGTGTACTCCACCAAGACGTGGACATCAAGTGAGAGTGATAAGTTTGTTGCCAAGAACTTCAAGCTATGCTGCAGCATCTGCAACGTTACTGTGGAAAACTTCAACGCATTGCAAACGCATTTTCGGGCACAGCATCACACTCGTGGCTATGCACTTTGTTGCGGCAAGAAACTGTGGGAACGTCGTGTTCTCATTGACCATATTCACGCGCATAATGATCCAGCGTACTTCTGTTGTCCCCGTTGTGGAAAGCAATTGGCCAGTCGAAAATCTTTGAAACTCCACGTTCAATGGCACGATGATTTGAGAAGTTGCATCTGTCGTCAGTGCTGGCAAGCATTGCTCACTTTCCACCAGTTCTATAAGCAGGTGGAGCGCGCTCATAAAATATTGGAGTGCGACCTAGCGCCAGCTGAGAACTGCGGATTTGCACAGCAGCTACCGCTTGTTGAAGCAGCATCGACGGAAAAAGAAGATGTAGAAGAAGAAAGCATGCAGTTTAAACTTGacccaaaaacaacaattgaagAGGTTGTAAAGGACAATCGTAGACATGGCTTGACgcggaaaaaaaaaccaatgGAATCGCGGAAAAGAGCAGCCAGTGCAAGTATGCAGAAACATAAAATCGAGAAGTTGCACCTTGACGCTTCTTATGTTGTTGACGTGCAATCTGGCAATCTGTCGGAGACAGAGAAAAAAGTGCCTGAACAAATAATTGATGAATGCAATTTGGAGTTTATTTCTGAGGCGGATGGTCCTGAGGCACTGGAAAAGTCGTCGAAGATTCAGCATGTGTACTCCAAAAAAGCGCGGATGTCACGTGAGAGTGATGAATATATTGCCGAGCACTTCAAGCTTTGCTGCAGCATCTGCAGCGTGGCTCTAAAAAACTTCAATTCATTGGAAACTCATTTTTGGGGACAGCATCACACTCGTGGCTATGTGCTTTGTTGCGGCAAGAAACTGCTGAAGCGCGGACTTCTCGTTGATCATCTTCACATGCATCAAGATCCAGCGTACTTCCGTTGTCCTCGTTGTGGAAAGCAACTGGCCAGTCGTCGTTGCTTGGAACTACACCTTCAAAGGCACAATAAACCCAAGGAACATAAGTATGAGTGTGAAATCTGCGACAGGAAATTTTCCCTGCGTACATCGTATGTTCGTCATCTGCTGGTGCATTTGCCGGAGGAAAAGAAAACAGTGCCCTGCCAGGAGTGTGAAAAAAAATTTGCTACAAAGTATTTGATGAATCAGCATCTGCGGCTGGTACATTTGAATACGTACGCGAAAATATGCGATATATGCGGCAAGTCACTGGTCAGCAGTGAGGCCTTGCGTCTTCACCTGGAGGAACACTCTGGCGTGCCAAGGCCTGTCATACATTGTGAATTGTGTGGCGTCAAGCTGACCAGCAAGTACGGCCTGAATCGGCACATGAAAGTGATACATTCGGAAGAAAATCGACAGCAACAAGTTTGTCCCATCTGTTCGAAGGTGTCGTCTAGCGTGAATGCACATAAACGTCATATAACCAATGTTCACAACAAAGTGCGCCTTCATGTATGTTCGATATGTACGAGAGGTTTTAAGCGACCTTTTCATCTGAAGCAACACATGACGACACATACCGGCGAGATACTCTACACATGCCCACACTGTCCGAAAACTTTCAAGTTTAATTCCAACATGCACGCACATCGTAAAAAAGAACACCATAAAGAGTGGGAGGAAAAACGATCAGATCGAttgaacaacaaacaaaaaataaaaaaagaaGTCGACGCTATCTACCATGCAGATAGTTGCATCTGTCGTCAGTGCTGGAGAGCATTATTCACTTTCCATAACTTCTATGAGCAGGTGGAGCGCGCTCATACGTTTTTAGAGCGCGACCTGAAACCAACCGAGAACTTCGTACTTGCAAAGCAGCTATCGCTCGCCGAAGCAGCACCAATGGACGAAGAAGATACAGAAGCAGCCATCGGCCAAATCAAAATAGAACCCGAAACAATATACTCGGAGATTGTGAAATCCGAGCGTAGACAGAGCCGGCCGCTCCCCCAAGACCCCAAAGTCGTAGAGTTGTATGCTCCTACAGTAATAGAAGAGAACTTAGATTTGGTGGGAGTACTGCAGGCTGAGAAACTATCGGAGGCAAAGGGAGAACCGGATGAGACGGTTGAAAACAATTTGGAGTTTATTTCAGAGACGGACGATTCTAAAAAACAGTTAGTCCATATACTGAGGGGTGATCATAATTTGGGGGCGTACGTTTTAAAGAAAGGCGATCCAATGTCATTGAAGGAATCCTCTAAGCGTCATCACATGTACTCCAAGAATATGTTGACAACACGTCAATGCGATGAATATATTGCGAAGAACTTTAAGTTAAGCTGCAACATCTGCGGGTTTGAGATGGATGACTTCTCAGCATTAAAACATCACTTCCGCGCGGAGCATGAATCATATGGCTATGCATTCTGTTGTGGTAAGAAACTGCAGAAACGCAGCGATCTCGTGGACCATCTTTACACGCATCAAGACCCAGCGTACTTTAGTTGCCCCTTTTGTAAGAAAGTACTGACAAGTCGTCGTTGTCTGAACATGCATCTTGATGGACACAAAAAATCGAAAATGCACAAGCCAAGGAAGAAGCCAAAATTGTTCTGCCCGGAGTGTGGAAAAAACTTTGTCACACAGTGCATACTTAAACAGCACCTGCGGCTGGCACATTTAAAAACGACTCCAAGGAGAATCGACCCCGAGGACATGGGAAAACATGGAAACATTGAAAAACGTTCCGTCTCCAAGCTTGtcattaaatgcaaaatgtgcGGCATCTCGCTAGCCTCCACGTTCAGCTTAAAACGGCACATACGAAAAATACACTTGGCAGAGAGTCAACAGGTTTGTCCCATCTGCTCGAAGATATCGCCCGGTGTACGGGCACATAAACAACACATGAAGCAACACACCGAAACATATACCAACGAGGAGGTCTATTCGTATTCACATTGTAGTCGTGGCAAGTCGCTGGCCGACTCTGAGGCCATGGGTcgccaaacaaaaaaagaaccCGTGCGGAAGCCTgtcataaaatgcaaaatttgcgGCCTCTCTCTAGCCTCAACATTCACTTTAAAGCGACACATAAGAAAAATACACTTGGCAGAGAGTCAACAGGTGTGCCCCATCTGCTCGAAGGTGTCGCCGGGCGTGAGGGCGCATAAAGAGCACATGAAGcaacataGCGAAACAAATACCAGCGAGGATATTTACACATATTCGCACTGTAGTCGCGGCAAGACGCTGTCTAGTCCCGAGGCTATGGGTTGCCAAATGGAAAAACATTCCATGTCGAAGCCTGTGATAATATGCAAAATGTGCGGCATCTCGCTAGCTTCCACATTCAGCTTGAAGCGGCACATACGAAAAATACACTTGGAGGAGAGTCAACAGGTTTGTCCTATCTGCTCGAAGGTGTCGCCAGGCGTGAGGGCGCATAAACAGCACATGAAGCAACACACCGAAACACATACCTATACATATTCACATTGTAACCGTAGCAAGTCGCTGGCCGACCCTGTGTCCATGGGTCGCAAAACGGAAAAACGTTTCGTGACGAAGCCTgtcataaaatgcaaaatttgcgGCCTCTCTCTAGCCTCCACGTTCACTTTAAAGCGACACATAAGAAAAATACACTTGGAAGAGAGTCAACAGGTGTGCCCCCTCTGCTCGAAGGTGTCACCCGGCGTGAGGGCACATAAACAGCACATGAAGCAACACACTGTGGCGCATACCGACAAGAAACCATAA
- Protein Sequence
- MLEKYFSWLKVDDIYSVDSCICHQCWQALLTFHNFYVQVERAHKILERDLKPTENFVLAKQLSLAEAAPMDEEDTEAAIGQIKIEPETIYSEIVIAERRESHPLPQDPKVVELYAPTVMDENLDLVEALQAGNLSEAKGEPDETFDDDLEFISEADNPVASKKPSKIKLVYSTKTWTSSESDKFVAKNFKLCCSICNVTVENFNALQTHFRAQHHTRGYALCCGKKLWERRVLIDHIHAHNDPAYFCCPRCGKQLASRKSLKLHVQWHDDLRSCICRQCWQALLTFHQFYKQVERAHKILECDLAPAENCGFAQQLPLVEAASTEKEDVEEESMQFKLDPKTTIEEVVKDNRRHGLTRKKKPMESRKRAASASMQKHKIEKLHLDASYVVDVQSGNLSETEKKVPEQIIDECNLEFISEADGPEALEKSSKIQHVYSKKARMSRESDEYIAEHFKLCCSICSVALKNFNSLETHFWGQHHTRGYVLCCGKKLLKRGLLVDHLHMHQDPAYFRCPRCGKQLASRRCLELHLQRHNKPKEHKYECEICDRKFSLRTSYVRHLLVHLPEEKKTVPCQECEKKFATKYLMNQHLRLVHLNTYAKICDICGKSLVSSEALRLHLEEHSGVPRPVIHCELCGVKLTSKYGLNRHMKVIHSEENRQQQVCPICSKVSSSVNAHKRHITNVHNKVRLHVCSICTRGFKRPFHLKQHMTTHTGEILYTCPHCPKTFKFNSNMHAHRKKEHHKEWEEKRSDRLNNKQKIKKEVDAIYHADSCICRQCWRALFTFHNFYEQVERAHTFLERDLKPTENFVLAKQLSLAEAAPMDEEDTEAAIGQIKIEPETIYSEIVKSERRQSRPLPQDPKVVELYAPTVIEENLDLVGVLQAEKLSEAKGEPDETVENNLEFISETDDSKKQLVHILRGDHNLGAYVLKKGDPMSLKESSKRHHMYSKNMLTTRQCDEYIAKNFKLSCNICGFEMDDFSALKHHFRAEHESYGYAFCCGKKLQKRSDLVDHLYTHQDPAYFSCPFCKKVLTSRRCLNMHLDGHKKSKMHKPRKKPKLFCPECGKNFVTQCILKQHLRLAHLKTTPRRIDPEDMGKHGNIEKRSVSKLVIKCKMCGISLASTFSLKRHIRKIHLAESQQVCPICSKISPGVRAHKQHMKQHTETYTNEEVYSYSHCSRGKSLADSEAMGRQTKKEPVRKPVIKCKICGLSLASTFTLKRHIRKIHLAESQQVCPICSKVSPGVRAHKEHMKQHSETNTSEDIYTYSHCSRGKTLSSPEAMGCQMEKHSMSKPVIICKMCGISLASTFSLKRHIRKIHLEESQQVCPICSKVSPGVRAHKQHMKQHTETHTYTYSHCNRSKSLADPVSMGRKTEKRFVTKPVIKCKICGLSLASTFTLKRHIRKIHLEESQQVCPLCSKVSPGVRAHKQHMKQHTVAHTDKKP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -