Basic Information

Insect: Neria commutata
Gene Symbol: -
Assembly: GCA_963457695.1
Location: OY735245.1:32139998-32144424[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.00018 0.017 16.0 0.8 1 23 193 215 193 215 0.95

2 15 0.0014 0.13 13.2 2.3 3 23 223 243 221 243 0.95

3 15 0.00016 0.014 16.2 0.2 1 23 374 396 374 396 0.98

4 15 0.014 1.3 10.1 1.7 1 23 402 424 402 424 0.99

5 15 1.3e-05 0.0012 19.7 2.7 1 23 455 477 455 477 0.98

6 15 0.0091 0.84 10.7 0.3 1 23 497 519 497 519 0.94

7 15 0.0065 0.6 11.1 1.7 1 23 525 548 525 548 0.97

8 15 0.29 27 5.9 0.3 5 19 559 573 556 574 0.91

9 15 0.00026 0.024 15.5 6.6 1 23 583 605 583 605 0.97

10 15 0.034 3.1 8.9 0.6 2 23 611 632 610 632 0.96

11 15 1e-05 0.00092 20.0 1.0 1 23 641 663 641 663 0.98

12 15 0.0051 0.47 11.5 0.2 3 23 671 691 669 691 0.97

13 15 6.1e-05 0.0056 17.5 0.5 1 23 697 719 697 720 0.95

14 15 1.7 1.6e+02 3.5 0.0 1 23 730 752 730 752 0.93

15 15 0.017 1.6 9.8 0.0 1 20 1308 1327 1308 1330 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.00018	0.017	16.0	0.8	1	23	193	215	193	215	0.95
2	15	0.0014	0.13	13.2	2.3	3	23	223	243	221	243	0.95
3	15	0.00016	0.014	16.2	0.2	1	23	374	396	374	396	0.98
4	15	0.014	1.3	10.1	1.7	1	23	402	424	402	424	0.99
5	15	1.3e-05	0.0012	19.7	2.7	1	23	455	477	455	477	0.98
6	15	0.0091	0.84	10.7	0.3	1	23	497	519	497	519	0.94
7	15	0.0065	0.6	11.1	1.7	1	23	525	548	525	548	0.97
8	15	0.29	27	5.9	0.3	5	19	559	573	556	574	0.91
9	15	0.00026	0.024	15.5	6.6	1	23	583	605	583	605	0.97
10	15	0.034	3.1	8.9	0.6	2	23	611	632	610	632	0.96
11	15	1e-05	0.00092	20.0	1.0	1	23	641	663	641	663	0.98
12	15	0.0051	0.47	11.5	0.2	3	23	671	691	669	691	0.97
13	15	6.1e-05	0.0056	17.5	0.5	1	23	697	719	697	720	0.95
14	15	1.7	1.6e+02	3.5	0.0	1	23	730	752	730	752	0.93
15	15	0.017	1.6	9.8	0.0	1	20	1308	1327	1308	1330	0.93

Sequence Information

Coding Sequence: atggaTGGACAGTCATACGGAATACAGTGGATACAGCATCACGGCCGCAGTGATATGAAAACTACAGGCCAACTGCTTGTTGATGCTCAACCACCGCAGGATGAAGATATCATGGCCGATGGAGCAACGGAGTATTTGGTAGACGGCGATGAAGACGTGACCACAGAAGCGGACATCGACCAGATAGCCGCGGAGAACCTTATTTTTATGGCGCGTGATGGACAGGTGGTTACAGAAATAATTGCGTCGGGCACAGATGAGCACGGCGCGGTGGTTGTGGCTGCGAGTGATGGTATGGAAATAGATTGCGCGGCCATGATTGAGCAAGCATCGGCGGATATGAGGACGAATCATCACGTGGACGATGGATGCGGTGCTGATTATACGGAACAATTCACAGATACCACGCCGCAAATGGTGACGGAAGAAATTATCACGGATGATTGGGTGCAGCATCAGGGAGAGGAACGTGTTGAAATACCTGCCGAGCAGATAATCGGTTCCAGCTCTCAGGTGCTGCTGGATATAGATGTGCCTTTACCCACAGTGCAGGATGAGTATACGGCATTAAGACCGTATCCATGCGATTTTTGTAGTCGTCGCTTTCGCAAGAAGGTAAGCCTGATGAACCATATGGTGGCACATCAAAATGATCGGCCTCACCTGTGCAAGTTGTGTGGATCACGATTTTTCCGTCGCTCGGATCTAATAAATCATTTAAAGGCGCACGCAGAGACACCTCATCCAGAGTTCGACGATGTGGACTTTATCAACTTCGTtgaacaagaacaacagcaacagcgtaAAGTTAACGATCACTTCTATGATCAGGATTGGGGTATGCAAGCAGATGCCATTGTTATAACACCGACCGTTAAACCTAGTCGCAATAAAACTCAGATTCCAAGTGGCAATAGCTCTTCTACCTCAACATCTACAGTGACCGGACGTGGTCGTATTAGTCGCCTCAAGCCCAAGAATGAGAGTTATGCGAACATCTCTGATTACGTGGACGTGGACTGTCAAGAGCTAAAAGCTGACACTGCAGCAGTCAAGCTCACGCAGGACCAACTTCCCATACAGCAGAAGCACTATCCTATTATAGACGACAGCAAACCCTTTGTGTGCCAGCAATGCGGTTTGGCGTTTGCACGAGAAAAGGCTTTGCTGTCGCATACAAAGAGCCACCGTAATGATTCGCCGTACGAGTGTAGTCAGTGCAATGAGATATTCTGGGACACAACCAGTCTTCATGAGCATCAGAAAACGCATCAGTTCGACGAAAGTAATTCAGAGTACGATCCCGCCGAGGCAGATGAAACCCAAAGCGATGAATCTGAATCTGAGACGCTTTATGGGGAGTTCTACTGCAGCGAATGTGGCATGTCTTTTCACCGACAGGATCTGTTGCGTAGGCATGCGAAATCGCATGCTTTGACCGACGGTTCCACGGGAGCTGGAGACACTTTGGAAAATATGGATGATCGCCATTGTTGCAATACATGTGGTGAGACTTTTGCCGAAGCGCTGGATCTGCTGGCACATGCCGAGATACACGCGCGGTACCCTGCCTTCAAATGTGTGCTCTGTGGGGAATCCTTTTTCGAGGAGCACACTATTAAGCGACACTTGCAGAGCTTACACACGAGTGAATTGACTCCAAACTCGTGTATATTATGTGGCAAGGAGTGTCGGGATCGCAAAGCGCTCATCAAGCACGCTTGGGATCATTCGCGGGAGAAGTGTCACTCCTGTTCTAAATGCGGCAAAAATTTCCACAACAAGGCGCGTTTGAAGCGGCACATGTCGTCCCATCGCGACAAGTCTGTGACCTGCGATGTGTGTCAAGAAGAGTTTCCCGACGGGCGCTCGTTGTCGAATCACAGGCACTCGCACAGCACCACCTCCGCGGGGAAGCTGTTCCCGTGCCATGAGTGCGGCAAAACGTTCGGATCCCGATCCTCACAGCAGATACACGTGCGCATCCACACGGGTGAGCGACCTTACGGCTGTCGGTTCTGCTGGAAGGCCTTCGCCGATGGTGGAACATTGCGCAAGCATGAGCGCATCCACACTGGGGAGAAGCCCTATGCCTGCTCCGTCTGTCCGCGGGCATTCAACCAGCGCGTTGTTTTGCGCGAGCATATTCGCTCACATCACTCTGGGCTGGACGAGAAGCGCGGCACGTACTTCTGCAGCGTCTGCTCGGCGGAGCCGCCCTCGTCGAGCGAATTGATACAGCATCTCATCCAGCACAGCGACATGAATACGGCCATGAAGCGGCAGCCAATTaCGGGCCCCCGCAAGTACAAGAGAAGGCGGAAATTAAAGCCGCACGAAATTGCGCGCTTACGCAGCGAGAATAAACAAAATGGCAACACCAGCGACATTGACATTTCGGACTTCGATATGGAGAACGTGGACGAATATTTGGGTGTTGTGGATACAGCAGCCGAAGCCACAACATCCACTAAAAGGTCTAAAGCTGCAACAAATGGCAAGCGCAGTGGGAAAGACTCAGCAGGTCAGAATAACAACCGTGGTGTCAATAATGGAGGTACCGCAGGCGGTAGAAATGCGGTGGCAGCAGTAGAGGACGATGTTGAAGAGGAGGAGACGACACTCGATGCTGTGACTGCCGAGAATGGGCAACGTTATAGCTCCATAACGAAGCTCATTAACTCGATTTCAAACGAAGAAACGTATAAGTCCTTGCTTTCGAATCCAGAAAATACGCTACAGAGTATAGATAAGCTTGTAGTGGACAACAGTTCTCTTGTCGGACACGGCAAAGGAAAGGTGAGGAATGAGATAGAGGGGACGGCGCAGCGCAcaaagcaatttaaagttGTGAAAGTGGAATCAAAGGAATCGTTTGAAATTAACAACATTAACGCTATTGGCAGTAAAGCAACACGAAAGAAGACGGAGAAGCAAGCGAAAGCCACTCGCCCGCGCATGATACACACGGAGAAGTCGCGGATGCCGACGGCCGACGGCGCTAAGCGTCGCTCCAAGACCTACATCACACGCAGTGAGCCCGCCCATTTCGAGATGTTGCCCAAATCTAGCAATATGGTCGACGACTACGAGATCATTTCTCCGGACACGCAGCCGCCGAAGCAAATCAGCTCTAGTCCACTACATATCAAGCTGGAGCACAAGCAGCGTCGGCAGCATCATATGTCCACCTCTTCTTCACAGGGCTCACACACATCGCGCAGTGGAGATCTGTACGATGCACAACTCTTGTTGGAGGCTTCAACACTGCGCAAGGAGACTTTGGAGAAATTCAATCCTAGTTTGGTTAATGTCCTGGAGGATATATTGCGTTCGCCCGTCAAGTGCGATAAGAGCGAGCGGCACCGTTTCGCCAGCGAGTCATCCACACAGTTTCTCGTGGAGCAGTCGGAAGAGGAAGAAcagcatttaataaaaatcgagCCCACCTCGCCAGATCTGCGGGAAATTGTCAGCGGCGTCAGTGTGAGCGGCACTGGCGTGAGCGGTGGCAGCGGTAGTGGTGCCGCGAGCACCGGCAGCAGTGCCGAGCGTCGGTCCACGCGCTGCACACGTAGCACTCGCGTATTGACAGCCAATCGCAAATATCTGGAATTCGAAACCGATGTCGCTGAATTGTCGAAATCCAACACAATTGCCACACCTCAAAAGCGCCCCGCCACCAGCCCAAACAAACACCGAGATATAAGCAGACAAAAGAAGGAGACGAAATGCCCATCTTCCTATTTCCCATATACCATGGGAACTTTCAGCACAGGCTCATCCGTCGGTGCAGCAGTTTCCTCTGGTTCTGCTGCTCAATCTTCGTTAGCTTACTCATCGATGTCAGGTTCTGTATCCACGGCAGGTGCTGCATCTGCTACGGCCGCCATAATACTTTCGGAAAACAAGCAACGCTACTTCGAATGCGAAATGTGCTCAGCTGTGTTTCCCGATCGAGCTCAGTTGCTGGACCATGTGCCCATACATATCTAA
Protein Sequence: MDGQSYGIQWIQHHGRSDMKTTGQLLVDAQPPQDEDIMADGATEYLVDGDEDVTTEADIDQIAAENLIFMARDGQVVTEIIASGTDEHGAVVVAASDGMEIDCAAMIEQASADMRTNHHVDDGCGADYTEQFTDTTPQMVTEEIITDDWVQHQGEERVEIPAEQIIGSSSQVLLDIDVPLPTVQDEYTALRPYPCDFCSRRFRKKVSLMNHMVAHQNDRPHLCKLCGSRFFRRSDLINHLKAHAETPHPEFDDVDFINFVEQEQQQQRKVNDHFYDQDWGMQADAIVITPTVKPSRNKTQIPSGNSSSTSTSTVTGRGRISRLKPKNESYANISDYVDVDCQELKADTAAVKLTQDQLPIQQKHYPIIDDSKPFVCQQCGLAFAREKALLSHTKSHRNDSPYECSQCNEIFWDTTSLHEHQKTHQFDESNSEYDPAEADETQSDESESETLYGEFYCSECGMSFHRQDLLRRHAKSHALTDGSTGAGDTLENMDDRHCCNTCGETFAEALDLLAHAEIHARYPAFKCVLCGESFFEEHTIKRHLQSLHTSELTPNSCILCGKECRDRKALIKHAWDHSREKCHSCSKCGKNFHNKARLKRHMSSHRDKSVTCDVCQEEFPDGRSLSNHRHSHSTTSAGKLFPCHECGKTFGSRSSQQIHVRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYACSVCPRAFNQRVVLREHIRSHHSGLDEKRGTYFCSVCSAEPPSSSELIQHLIQHSDMNTAMKRQPITGPRKYKRRRKLKPHEIARLRSENKQNGNTSDIDISDFDMENVDEYLGVVDTAAEATTSTKRSKAATNGKRSGKDSAGQNNNRGVNNGGTAGGRNAVAAVEDDVEEEETTLDAVTAENGQRYSSITKLINSISNEETYKSLLSNPENTLQSIDKLVVDNSSLVGHGKGKVRNEIEGTAQRTKQFKVVKVESKESFEINNINAIGSKATRKKTEKQAKATRPRMIHTEKSRMPTADGAKRRSKTYITRSEPAHFEMLPKSSNMVDDYEIISPDTQPPKQISSSPLHIKLEHKQRRQHHMSTSSSQGSHTSRSGDLYDAQLLLEASTLRKETLEKFNPSLVNVLEDILRSPVKCDKSERHRFASESSTQFLVEQSEEEEQHLIKIEPTSPDLREIVSGVSVSGTGVSGGSGSGAASTGSSAERRSTRCTRSTRVLTANRKYLEFETDVAELSKSNTIATPQKRPATSPNKHRDISRQKKETKCPSSYFPYTMGTFSTGSSVGAAVSSGSAAQSSLAYSSMSGSVSTAGAASATAAIILSENKQRYFECEMCSAVFPDRAQLLDHVPIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -