Basic Information

Insect: Neria commutata
Gene Symbol: -
Assembly: GCA_963457695.1
Location: OY735247.1:46436047-46438561[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0011 0.099 13.6 0.4 1 23 329 352 329 352 0.96

2 12 0.018 1.7 9.7 2.4 1 23 358 380 358 380 0.98

3 12 3.5e-06 0.00032 21.4 3.1 1 23 387 409 387 409 0.99

4 12 4e-07 3.7e-05 24.4 0.8 1 23 415 437 415 437 0.99

5 12 3.7e-05 0.0034 18.2 1.4 1 23 444 466 444 466 0.98

6 12 0.00015 0.014 16.2 0.8 1 23 472 494 472 494 0.96

7 12 2.3e-05 0.0021 18.8 0.3 1 23 500 522 500 522 0.97

8 12 5.5e-06 0.00051 20.8 0.9 1 23 528 551 528 551 0.97

9 12 2.8e-05 0.0026 18.6 1.7 1 23 557 580 557 580 0.94

10 12 1.3e-05 0.0012 19.6 0.9 1 23 586 608 586 608 0.98

11 12 3.1e-05 0.0028 18.4 0.5 1 23 614 636 614 636 0.96

12 12 0.00064 0.059 14.3 0.2 1 22 642 663 642 666 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0011	0.099	13.6	0.4	1	23	329	352	329	352	0.96
2	12	0.018	1.7	9.7	2.4	1	23	358	380	358	380	0.98
3	12	3.5e-06	0.00032	21.4	3.1	1	23	387	409	387	409	0.99
4	12	4e-07	3.7e-05	24.4	0.8	1	23	415	437	415	437	0.99
5	12	3.7e-05	0.0034	18.2	1.4	1	23	444	466	444	466	0.98
6	12	0.00015	0.014	16.2	0.8	1	23	472	494	472	494	0.96
7	12	2.3e-05	0.0021	18.8	0.3	1	23	500	522	500	522	0.97
8	12	5.5e-06	0.00051	20.8	0.9	1	23	528	551	528	551	0.97
9	12	2.8e-05	0.0026	18.6	1.7	1	23	557	580	557	580	0.94
10	12	1.3e-05	0.0012	19.6	0.9	1	23	586	608	586	608	0.98
11	12	3.1e-05	0.0028	18.4	0.5	1	23	614	636	614	636	0.96
12	12	0.00064	0.059	14.3	0.2	1	22	642	663	642	666	0.92

Sequence Information

Coding Sequence: ATGGCCAGCACATCTGCACTTTTGGTTGCTGGCGCTGCTCTGAAGATGGAAGTGCCTGATACTGGCAACTCGCTCTCGCCGGAGTACATGATCGAGTCCGCAAAATGTTTCTTGTGCGACCATGTTTTTGTGGAAGGCGATCAGCCGTTTCTGATATTCGAGAAACGCATCCGCGAGGATGGGCAGCTGGAGTGCGCGCTTTCGGCGGTGTTGTCTTCAGCATTGGGTCGTGACGTAGATGAGACGGAGGCGCATTCGAGCTTACTGTGTGAGTCTTGCAACAGCACCGTACTGGAATTCGAGAGTCTGGAGCAGCGATTCTGTGAGATACGCTATCGCATCCTGAGCGCCTACAACTGCACAGCTGGACACAACGAATTGGATCCCATTGTTTTTGAGATAAACGGAGTGTTGCAGGATGGCAGTTCCAACGTTGCACAAGTGGTTAAACAAGAAACTAAAGACAGAGACTTCTCCGATCTACAGCTAGCTGTCGATGCAGATGTTGCTGCTTTAGTGGAGGAGGTGCACGAGGATATGTGTGAAGATGGTAAAGTTACGCAAGATGTATTTCACTGTGTGATAACTGAtacacagcagcagccagcagtGGTAAATTTCTCAGCGGAACCAGAAAATCTCACTGACGTCGCGCTGGATGAACAAGACATGGCCCTTTACGATGAATTGATTGAGCAAACTTCACAGATGTGTGCTAGCGAGGAGGCGTTCAGTGTTGGGTCACAGCAGGATATAGAGGCATATGGTACTACCAGTCAGTCGACTTCCGAATTAATGTACAATGAAGCTGATGATGCGGTGGAGCGCAGTTCTTCAATACACGACACCGCCCCAAATGCAGGGCAGTCACTTTTCAAACTTGAAGGCAACAGATACTGTTGCCTCATTTGTAAAATAGCGCCGCCGCATTTAGATGGCAATTCCTTTGCCGAGCACATGCGCAGCGCGCACAAAACACCCTTCTACGTGTGCAGCCTGTGCCACACGGGCTTCGCGGAGCGGCAAGACTTAGAGACGCACATCGATTCGCAGCATTGTGTGAGCTCCAGCTACGAGTGCGACACTTGCGAGCGCTTGTTCACCAATTACCGCGTATTCCGTCTGCACAAGCGCTCCCATTACGGTAGTGGCAAGCAGTACGAGTGCAGCGAGTGCCACAAAAAGTACAGCTCGAAAAATCTGCTGACCGAGCATATGAACATGCACACGGGTGAGCGGCCCTACAAGTGCAGCAAGTGCCCCAAAGACTTCGCCTCCAAATACACGCTGCAGGCGCACATAAAGATACACACCGAACGACAGCGTCCCTACAAGTGCGACGAGTGCGACAAGGCGTTTCTCAACCAGCAGAATCTGACGCAGCACAAGAAGTTGCACGTGAGCGTGAAGGAATTCGTATGTGATGTATGCGATAAGGCGTTCAGCACTCAGCACAATCGGGACGTGCACAAGATCGTGCACTCCGGGCAGCGGCCGTTCATTTGTCGGACCTGCGGCAAGAGTTTCGCACGTCGCGCCGACGTGAAGGATCACGAGCGCATACACACGGGGGAGCGACCGTTCAAGTGCGACATGTGCCCGCTGGCCTTTGCGCAGCGCTCCAATCTGACGTCGCACAAAAAGTCGACGCATTTAAAGGAGAAGCTGCACAGGTGCGAGCAATGCGGTCGCTCCTTCAAACGGCGCCGTCTGCTTGAGTACCATGTGCAGGCGGTGCATACGGGCGAGCGTCCGTACAAGTGCCAGATTTGTAACGCGGGCTTCGTCTACCCGGAGCACTACAAGAAGCACATGATCATACATTCGGGTGAGAAGCCCTACGCCTGTGAAATTTGCGGTAAGCAGTTCAACAGCAACGACAATCGGAAAGCTCACCGTTTCGTGCATAGCGAAAAGAAGCCCTACGAGTGCCTTGATTGCGGTGCAGGTTTTATGCGTAAGCCGCAACTGTTGGCCCACATCAAACACATGAATCACTCAAACGATACGATCATCGTAAATCAGCCGCATATCACCGGAGCTGGGTCGCAACTGGACAGTGAAAATATGCACTTTAGTGACGAGTCCGTGAGTGGGATCAAAGAGGCGGTGGAAACAAGCGCATCCTTGGAGAAGATGATGCAGCGCGCTGGCGGCATACTGGCGCATGTAGACAACGGAACAGTAGACACCGACGCCATCACCACTGTCAGTGGGCAGCTGATCAAGGACGAGTTAGGTGCTGTGAAGTACTTGGAGTTCGCAGATCTGGATGGCGAGGGCCAGGAAGGATTCACTTGGGTGGACATTGGCGGTAACGGGGATAAGGTTTAA
Protein Sequence: MASTSALLVAGAALKMEVPDTGNSLSPEYMIESAKCFLCDHVFVEGDQPFLIFEKRIREDGQLECALSAVLSSALGRDVDETEAHSSLLCESCNSTVLEFESLEQRFCEIRYRILSAYNCTAGHNELDPIVFEINGVLQDGSSNVAQVVKQETKDRDFSDLQLAVDADVAALVEEVHEDMCEDGKVTQDVFHCVITDTQQQPAVVNFSAEPENLTDVALDEQDMALYDELIEQTSQMCASEEAFSVGSQQDIEAYGTTSQSTSELMYNEADDAVERSSSIHDTAPNAGQSLFKLEGNRYCCLICKIAPPHLDGNSFAEHMRSAHKTPFYVCSLCHTGFAERQDLETHIDSQHCVSSSYECDTCERLFTNYRVFRLHKRSHYGSGKQYECSECHKKYSSKNLLTEHMNMHTGERPYKCSKCPKDFASKYTLQAHIKIHTERQRPYKCDECDKAFLNQQNLTQHKKLHVSVKEFVCDVCDKAFSTQHNRDVHKIVHSGQRPFICRTCGKSFARRADVKDHERIHTGERPFKCDMCPLAFAQRSNLTSHKKSTHLKEKLHRCEQCGRSFKRRRLLEYHVQAVHTGERPYKCQICNAGFVYPEHYKKHMIIHSGEKPYACEICGKQFNSNDNRKAHRFVHSEKKPYECLDCGAGFMRKPQLLAHIKHMNHSNDTIIVNQPHITGAGSQLDSENMHFSDESVSGIKEAVETSASLEKMMQRAGGILAHVDNGTVDTDAITTVSGQLIKDELGAVKYLEFADLDGEGQEGFTWVDIGGNGDKV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -