Basic Information

Insect: Neria commutata
Gene Symbol: -
Assembly: GCA_963457695.1
Location: OY735249.1:3376809-3379114[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0025 0.23 12.4 0.4 1 23 123 146 123 146 0.92

2 13 0.0041 0.38 11.8 0.3 2 23 152 174 151 174 0.94

3 13 6.5e-05 0.006 17.4 5.1 2 23 184 206 183 206 0.96

4 13 0.00045 0.042 14.8 0.3 1 23 379 401 379 401 0.99

5 13 2.1e-05 0.0019 19.0 4.4 2 23 408 430 407 430 0.95

6 13 0.00017 0.016 16.1 3.9 2 23 437 459 436 459 0.96

7 13 2.4e-07 2.2e-05 25.1 0.9 1 23 464 486 464 486 0.98

8 13 0.0028 0.26 12.3 0.2 1 22 491 512 491 515 0.92

9 13 0.0016 0.14 13.1 1.3 3 23 521 541 520 541 0.99

10 13 8.6e-05 0.0079 17.0 1.8 1 23 547 569 547 569 0.98

11 13 2.5e-06 0.00023 21.9 2.5 1 23 575 597 575 597 0.96

12 13 9.5e-07 8.8e-05 23.2 0.4 1 23 603 625 603 625 0.99

13 13 0.21 20 6.4 0.1 1 23 630 653 630 653 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0025	0.23	12.4	0.4	1	23	123	146	123	146	0.92
2	13	0.0041	0.38	11.8	0.3	2	23	152	174	151	174	0.94
3	13	6.5e-05	0.006	17.4	5.1	2	23	184	206	183	206	0.96
4	13	0.00045	0.042	14.8	0.3	1	23	379	401	379	401	0.99
5	13	2.1e-05	0.0019	19.0	4.4	2	23	408	430	407	430	0.95
6	13	0.00017	0.016	16.1	3.9	2	23	437	459	436	459	0.96
7	13	2.4e-07	2.2e-05	25.1	0.9	1	23	464	486	464	486	0.98
8	13	0.0028	0.26	12.3	0.2	1	22	491	512	491	515	0.92
9	13	0.0016	0.14	13.1	1.3	3	23	521	541	520	541	0.99
10	13	8.6e-05	0.0079	17.0	1.8	1	23	547	569	547	569	0.98
11	13	2.5e-06	0.00023	21.9	2.5	1	23	575	597	575	597	0.96
12	13	9.5e-07	8.8e-05	23.2	0.4	1	23	603	625	603	625	0.99
13	13	0.21	20	6.4	0.1	1	23	630	653	630	653	0.89

Sequence Information

Coding Sequence: ATGACAGCGTTGCTGGATATGGATAATCTCTGTCGCGTTTGCATGCGCGGCGAGCAGGAGATGTTTTTAATCTTTGATGAGAAGTACGCGGAGGAGCGAAGTGTTGCAGATATGCTGTCGGAGTGCACAAGGTACAAGGTGGAACGCTTTGATGAGTTGCCGCAACAAATTTGCGGCAATTGTTTGACGGGAGTGCGTCAAGCTTTTCGCTTTAAAAGAGAGTGCGAGAAATCTTATCGGTCGCTAGTCGCACTGCTGGTCGGCAACGAGAGTGCAGTCACAAAATCGTTGGACGACGGTGCAATTATCAAAGTAGAAGCGGCGTGTAATACGGAAAAGAGCACACAAACCGACCACTGCACGATGTATCCATGTGAACGTTGCGAGCAAAAGTTCTTTAACTATGATGCACTGAAGGCACATCGCGATGAGGAGCATCGTGGCAACCCCATTGTTTGTCGCTTCTGTGCGAAAAAATTCAATCGCATTGGCTACCTGAAAACACATATTGCAGTTTTTCATCCGGGAACGGGTTACAAATCGCACAATCAATGTCACATATGTAAACGCCAGTTTACAAGGCGTCAACACATGCGTCGCCACATGGCAGTCATACACAAAATTGTGGACAACGTTGATGACGCGTCTGAAATGAACGTTGATGACGCGTCTGAAATGAAGGAAGTTGAAGAGGCCAGGAATTCAGCAGAGAGTATTGAAGCGTTGCCGGTTAAACTTGAAGTAGATGCAACAAGTGTATTGGAAACCTCAAAATTCCAGCCAGCTGAAGCAGAGAACCCAGATCAAGTAGAATATGATATTGAAGGTGATGCAGAGCAATCTCCAGCATCGACAACTGACAGCGACGATGAAGATGAGAAACCTTTAGCCGATCTATTGCTTGCCACACCTATGAAAGGATTTATGGAGGTTCTGCTGCATGCGGCTGCCTGTGACGATGAACTGCCCGAATGTGTGGAGGCGATGACAAAGCCCAGCATTAAAACCGAATCCACTACCACAACGACAAGAAAGATAAAGGCACGTGATATGCTGTCTCCTATGAAACGTGGACGCGGGCGCCCACCTCGAAGAGCGAAAGAGGCAACCTGCAGCACAGATGACGAGCAGCAATACAAATGCGAAGCATGTGATGAGGTGTTCCAAGAACGTGTCAGTTTGCAGCAGCACACATTGACGCATACACAGGCGACACGTTGCAGCtgtaaaatttgtggcaaACGTTTTGCGAGCGCTAAACTTTTAAAGCACCATTTGAACAGCACGCACAGCGCCGCCAAGGTGATGAAATGCGAGCAGTGCGATAAGATCTTTACACACATCAGCCAGTACAAACGTCACAAGGAGACAAAACACAGTGacaaaatgtataaatgtGAAATCTGTGAAAAGATTTTCAGCACCAAAATCTACCTGCAGCGGCACATGACCATACACGACAAGAAACGCTACGTTTGCAAGGAGTGCTCCCAGAGCTATTTGACGAAGGAGGAGTTAAATTCGCACATTAAGGCTGAGGGACATGACAAGCCTATGCTCTGCCCGGAATGCGGCTTACGCTGCAAAACTAGCAACATCTTAATGGTTCACATGCGTCGGCATAATGGCGAAAAGCcgtttaaatgcaaattctgcAGCAAAGGATTTCCGCGCACGGACGACCTGCGTGTGCATGAGAAGTATCACACAGGCGAGAAGTCACATTTCTGTGAGACATGCGGTAAGGGTTTTCAGCGGAAATACAATTTGACTATACATCTACGCGTGCACACGGGCGAGAAGCCCTACAAATGCCCACACTGTCCACAGGCATTCGCGCAAGGTAACGACCTGAAGGCACACATTCGCCGACATACAGGCGAACGTTTTCGCTGTGAGGTGTGTGGTGCTGCTTTCCTGCAGGGCTACCAAATACGCCAGCATAAGCTGATGGAACACGGTATTAAGGAGAATCCGCCTACGCAGCGAGTGGCTAAGTTTACCTCGCCGGAAGAGCAGGAGCAGCAAATAAGACAAAACTTGCAAAAGGAGTAA
Protein Sequence: MTALLDMDNLCRVCMRGEQEMFLIFDEKYAEERSVADMLSECTRYKVERFDELPQQICGNCLTGVRQAFRFKRECEKSYRSLVALLVGNESAVTKSLDDGAIIKVEAACNTEKSTQTDHCTMYPCERCEQKFFNYDALKAHRDEEHRGNPIVCRFCAKKFNRIGYLKTHIAVFHPGTGYKSHNQCHICKRQFTRRQHMRRHMAVIHKIVDNVDDASEMNVDDASEMKEVEEARNSAESIEALPVKLEVDATSVLETSKFQPAEAENPDQVEYDIEGDAEQSPASTTDSDDEDEKPLADLLLATPMKGFMEVLLHAAACDDELPECVEAMTKPSIKTESTTTTTRKIKARDMLSPMKRGRGRPPRRAKEATCSTDDEQQYKCEACDEVFQERVSLQQHTLTHTQATRCSCKICGKRFASAKLLKHHLNSTHSAAKVMKCEQCDKIFTHISQYKRHKETKHSDKMYKCEICEKIFSTKIYLQRHMTIHDKKRYVCKECSQSYLTKEELNSHIKAEGHDKPMLCPECGLRCKTSNILMVHMRRHNGEKPFKCKFCSKGFPRTDDLRVHEKYHTGEKSHFCETCGKGFQRKYNLTIHLRVHTGEKPYKCPHCPQAFAQGNDLKAHIRRHTGERFRCEVCGAAFLQGYQIRQHKLMEHGIKENPPTQRVAKFTSPEEQEQQIRQNLQKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -