Basic Information

Insect: Neria commutata
Gene Symbol: -
Assembly: GCA_963457695.1
Location: OY735249.1:3155093-3160185[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 4.4e-05 0.004 18.0 4.4 1 23 200 223 200 223 0.97

2 15 0.024 2.2 9.3 0.5 1 19 237 255 237 259 0.92

3 15 1.1e-05 0.001 19.8 0.1 3 23 264 284 262 284 0.96

4 15 0.00011 0.0099 16.7 1.0 1 23 290 312 290 312 0.98

5 15 2.6e-05 0.0024 18.7 0.3 3 23 320 340 318 340 0.97

6 15 0.00023 0.022 15.7 1.7 2 23 347 368 347 368 0.91

7 15 0.00016 0.015 16.2 0.8 1 23 374 396 374 396 0.97

8 15 6.6e-06 0.00061 20.6 1.4 1 23 482 505 482 505 0.97

9 15 0.00041 0.038 14.9 0.2 1 20 520 539 520 542 0.94

10 15 7.1e-05 0.0066 17.3 0.2 3 23 547 567 545 567 0.95

11 15 3.4e-05 0.0031 18.3 2.7 1 23 573 595 573 595 0.98

12 15 4.9e-05 0.0046 17.8 0.3 3 23 603 623 601 623 0.97

13 15 0.00024 0.022 15.7 0.2 2 23 630 651 630 651 0.91

14 15 8.6e-05 0.008 17.0 0.8 1 23 657 679 657 679 0.97

15 15 7e-07 6.4e-05 23.6 1.0 1 23 685 707 685 708 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	4.4e-05	0.004	18.0	4.4	1	23	200	223	200	223	0.97
2	15	0.024	2.2	9.3	0.5	1	19	237	255	237	259	0.92
3	15	1.1e-05	0.001	19.8	0.1	3	23	264	284	262	284	0.96
4	15	0.00011	0.0099	16.7	1.0	1	23	290	312	290	312	0.98
5	15	2.6e-05	0.0024	18.7	0.3	3	23	320	340	318	340	0.97
6	15	0.00023	0.022	15.7	1.7	2	23	347	368	347	368	0.91
7	15	0.00016	0.015	16.2	0.8	1	23	374	396	374	396	0.97
8	15	6.6e-06	0.00061	20.6	1.4	1	23	482	505	482	505	0.97
9	15	0.00041	0.038	14.9	0.2	1	20	520	539	520	542	0.94
10	15	7.1e-05	0.0066	17.3	0.2	3	23	547	567	545	567	0.95
11	15	3.4e-05	0.0031	18.3	2.7	1	23	573	595	573	595	0.98
12	15	4.9e-05	0.0046	17.8	0.3	3	23	603	623	601	623	0.97
13	15	0.00024	0.022	15.7	0.2	2	23	630	651	630	651	0.91
14	15	8.6e-05	0.008	17.0	0.8	1	23	657	679	657	679	0.97
15	15	7e-07	6.4e-05	23.6	1.0	1	23	685	707	685	708	0.96

Sequence Information

Coding Sequence: atgctaaaaatattaCCAACGGATGCAAGCAAACTGCTTGATTTTAAGTGTGGCGAGATTTACTGCATCACATCCAGCAGCTATAATGTCGCTTGCTGCTTGTGCACCCATAAAGTACCATTCGAGGAATTTACAAAGCACTTCCAAAAACATTGGGAACAGACGCAATCAAACTCTACGGTCAccacaagaagaagaagtctCAGGAAAGCAGAACAGGCGAAGCCAAAAGTGGAAATAACACTAAACGAAAATCCTATTAAGTCGGAGGAGAACAGTGAAGAAGAGTCGAGTTATGAACCAACGTTGTTTACTATATACAAAGAAGAAGCGGTGGACGGCGAAGAAAAAGATGAGCCGCTTGTTGATCTAGCGGATTTGCAAATGGTGTCAATGGAACAGCCTATGCAAGAAGAACCACTTTGTGCAGCCATAGTGTGTgaagagaaaaaagaaaaggagATGCAAAAAACAGAACCACCGCTGGATGATGACAAGGATAATGACAGCGACTGGCAAGGCGATGAAGCCGAAAATGAAGATGATTCTGATTATGAAGAAACGAAGGAGGAAAATGCTACAAAAGAGATATTACCTTTTCCGTGTTCGAAATGTGAACGTTCTTACAAATCTAAACGCAGCTTGCAACATCATCTGCGCTCCAATCACAGTACTACGGTGCGAAAACCACGAAAGCCAAAACAGGAGCACAAATGCGACGAGTGCGGAGTAGTGTTCGGTTCCGAGCGTCTACTGCGGGGGCACAAGTGGAAGCATACGGGCATTTTCTGCGACATCTGTGGCAAACCCTTTAGCCAAGCGGGAAACATGATTCGCCACAAAATAAGACACACCGGCATTAAAGCGCATAAATGCGCAGAGTGCGGCAACGACTTCTATACGGAAAAAGAATTACGAGCGCATATGTTGCGTCACACAGGGATAATGCCTATAATTTGTGAAATATGTGGGCGACCGTGTCGAGATCGAGGCGTGCTGACGGCGCACATGCGTCGGCACACAGGGGAACGCCCAGCAAAATGTCCGGTTTGTGGCAAATGTTTCTACAGCTTCCATGATTTAAATGTACACGCAGTTGCGCACACCAGCGAAAGACCTTTCGTTTGTGATGTTTGCGGCTCGACGTTTCAACGCAAGAAGGCGCTAAGAGTGCACAAGAAACTGCACTCCACAGAACAAAAAACTGAAACGCGAGGAGATGAAGATGAGGATGAGCCACTTGTTGACTTGATCGACCTTCAAATGTTGCCCATAGAAGGGGAGCCAGCAGGAGAGCCATTACAACTACAACAGTTGACAATCATAAAGGAACAAAATGAGGAAGTCAAGCATATGGACAAGGAAGAAGACGGGAGCAATCAGGACCAGGATTTACCGCAGAAAGAGGATAGCAAAGAAAGTGAAACCGAAGAAGAACTGTCCTATGCTTGCACAAAATGTGAGCGCCGCTATAAGACCAAACGTGCTCTACAAAGCCATATACGAACAGTGCACAACCCCAATCGGGGAAAATCAAAGAGCAAACAAATGGAGGACTACAAATGTGCGGAATGTGATGAAGTATTTCGCTCAGAACGACTGTTGCGTGGCCATATGTGGAAGCATACGGGCATTTTCTGCGACATCTGTGGCAAACCCTTCAGTCAAACGGGCAACATGATTAGGCATAAAGTGAGACATACTGGCATTAAAGCTCACAAGTGCGAAGACTGCGGCAATTGCTTCTATACGATTGAAGAATTGCGCGCTCATATGTTGCGACACACCGGCAAAAGGCCTGTCATATGTGAGGTATGCGGCCGACCGTGTCGAGATCGAGGCGTGCTGACGGCGCACATGCGTCGGCATACCGGAGAGCGGCCAGCCAAATGTCAGGTATGTGGAAAAAGCTTCTACAGTTTCTACGATCTAAACGTGCATGCCGTGGCGCACACCAGCGAGCGGCCATTCGTCTGTGATACTTGCGGCGCGACATTTCAGCGCAAAAAAGCGTTGCGCGTACATAAAAAGCTACACAACAAAGAGCATAACCATCAGTGCAAAGTGTGCGGTAAAGCCTTTGCACAGTCGGCCGGCTTAAGTGCCCATGTGCGTACACATCATGGCAATCGTTTGGACGAGACTGCGCATGCGGCGCCTGGCCTAGCTGGCGAAGTTTCATCAGATGCGGTTGTAAATTGCTCGTGCCTGGATGGACTGGAAATGAAGACGTTCTTCCTAATCTACACGTTAATTGCCGCGGCTGCTGCATTGCCTTTACGAGAGCGCAGCACGGATATGATTGAGGAACGAGGCAGCGGCAATGTAAAATTCTACTTGTACACCAGAAGTAATCCCAGCACACCGCAGGAATTGCTTATCGAAGACGAAACTACAATGGTGAATTCCAATTTTGACAAGAGTCGTCATACAAAAATCATAATACATGGCTGGGGTGGCTCTCTGTCATCATCACTCAATCCTACTATACGTGATGCTTACCTCGCGCAACAGGACTACAACATTATTTCTGTGGATTGGTATTCGTATGCGAAGCTGAATTACATTTCGGCGCGCGCCAAGGTGCCTACTGTGGGTGAGGATGTCGCTGAGCTTGTGGATTTGTTACATGATGAATTCGGCCTGAACTTCGACATGCTGGTGGTTATAGGGCACAGCTTGGGTGCGCATGTGGCTGGCTACTGTGGCAAGTTGGTGCGCGGCAAAGTGGCTGCCATTGTGGGGTTGGATCCTGCCTTCCCGCTATATAGTTATGATAATACAGAAACGCGCCTGTCCACCACCGATGCACATTATGTTGAAACCATACAGACGAATGGCAATGTAAAGGGCTTTTTGAAACCCATTGGCACTGTCTCTTTCTATCCCAACTGGGGCCACAAGCAGCCGGGGTGTGGTCAGGATTTAGACGGCACTTGCTCGCATGGACGTTGTGTTAAGTACTATGTTGAAGCGTTGCAGGGCTACATATATGATCCGATTTATCAGTGCCAGGACTTCAGTAATATTTCGGAAAATGTTGGTTGTACGGATTTTCAGCCGACTGTCAGCGTGGGTGATCCGCTGCATATAGAACGCGTGGAAGGCATTTACTACTTTGAGACAAGCGATACAGCGCCATTCGGCAGATTGTGCCAGAGACAATTTGAGAAATAA
Protein Sequence: MLKILPTDASKLLDFKCGEIYCITSSSYNVACCLCTHKVPFEEFTKHFQKHWEQTQSNSTVTTRRRSLRKAEQAKPKVEITLNENPIKSEENSEEESSYEPTLFTIYKEEAVDGEEKDEPLVDLADLQMVSMEQPMQEEPLCAAIVCEEKKEKEMQKTEPPLDDDKDNDSDWQGDEAENEDDSDYEETKEENATKEILPFPCSKCERSYKSKRSLQHHLRSNHSTTVRKPRKPKQEHKCDECGVVFGSERLLRGHKWKHTGIFCDICGKPFSQAGNMIRHKIRHTGIKAHKCAECGNDFYTEKELRAHMLRHTGIMPIICEICGRPCRDRGVLTAHMRRHTGERPAKCPVCGKCFYSFHDLNVHAVAHTSERPFVCDVCGSTFQRKKALRVHKKLHSTEQKTETRGDEDEDEPLVDLIDLQMLPIEGEPAGEPLQLQQLTIIKEQNEEVKHMDKEEDGSNQDQDLPQKEDSKESETEEELSYACTKCERRYKTKRALQSHIRTVHNPNRGKSKSKQMEDYKCAECDEVFRSERLLRGHMWKHTGIFCDICGKPFSQTGNMIRHKVRHTGIKAHKCEDCGNCFYTIEELRAHMLRHTGKRPVICEVCGRPCRDRGVLTAHMRRHTGERPAKCQVCGKSFYSFYDLNVHAVAHTSERPFVCDTCGATFQRKKALRVHKKLHNKEHNHQCKVCGKAFAQSAGLSAHVRTHHGNRLDETAHAAPGLAGEVSSDAVVNCSCLDGLEMKTFFLIYTLIAAAAALPLRERSTDMIEERGSGNVKFYLYTRSNPSTPQELLIEDETTMVNSNFDKSRHTKIIIHGWGGSLSSSLNPTIRDAYLAQQDYNIISVDWYSYAKLNYISARAKVPTVGEDVAELVDLLHDEFGLNFDMLVVIGHSLGAHVAGYCGKLVRGKVAAIVGLDPAFPLYSYDNTETRLSTTDAHYVETIQTNGNVKGFLKPIGTVSFYPNWGHKQPGCGQDLDGTCSHGRCVKYYVEALQGYIYDPIYQCQDFSNISENVGCTDFQPTVSVGDPLHIERVEGIYYFETSDTAPFGRLCQRQFEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -