Ncom005468.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Neria commutata
Gene Symbol
-
Assembly
GCA_963457695.1
Location
OY735245.1:63975614-63981459[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 26 0.0012 0.11 13.5 1.7 1 23 267 289 267 289 0.97
2 26 4e-06 0.00037 21.2 2.7 1 23 295 317 295 317 0.99
3 26 0.13 12 7.0 0.3 2 23 365 386 364 386 0.95
4 26 0.0071 0.66 11.0 3.6 1 23 458 481 458 481 0.95
5 26 0.0016 0.15 13.1 0.3 2 23 558 579 557 579 0.97
6 26 0.011 1 10.4 1.3 1 23 586 609 586 609 0.95
7 26 0.45 41 5.3 4.5 2 23 617 638 616 638 0.96
8 26 0.025 2.3 9.3 1.0 1 23 724 747 724 747 0.96
9 26 0.089 8.3 7.5 1.0 1 21 756 776 756 777 0.91
10 26 0.071 6.6 7.9 0.2 2 23 787 809 786 809 0.94
11 26 0.00016 0.015 16.2 0.3 2 23 825 846 824 846 0.97
12 26 1.7e-06 0.00016 22.4 2.7 1 23 853 875 853 875 0.99
13 26 4 3.7e+02 2.4 2.1 3 23 913 933 911 933 0.78
14 26 7.9e-06 0.00073 20.3 1.3 1 23 1023 1046 1023 1046 0.97
15 26 0.014 1.3 10.1 3.1 1 23 1083 1106 1083 1106 0.98
16 26 1.8e-06 0.00016 22.4 0.6 2 23 1124 1145 1123 1145 0.97
17 26 0.00013 0.012 16.4 4.1 1 23 1152 1174 1152 1174 0.99
18 26 0.028 2.6 9.1 0.2 3 21 1202 1220 1200 1221 0.92
19 26 9.4e-05 0.0087 16.9 4.6 1 23 1266 1289 1266 1289 0.98
20 26 0.0032 0.29 12.1 1.4 1 23 1326 1349 1326 1349 0.97
21 26 0.00041 0.038 14.9 4.1 1 23 1382 1405 1382 1405 0.97
22 26 1.6e-05 0.0015 19.4 0.2 2 23 1437 1458 1436 1458 0.95
23 26 0.0019 0.17 12.8 3.3 1 23 1464 1486 1464 1486 0.98
24 26 2.9e-06 0.00027 21.7 5.5 1 23 1492 1514 1492 1514 0.98
25 26 9.6e-08 8.8e-06 26.3 1.5 1 23 1520 1542 1520 1542 0.99
26 26 0.0027 0.25 12.3 0.1 1 22 1548 1569 1548 1572 0.90

Sequence Information

Coding Sequence
ATGGCCACAAACTTAAGAGGTGCTGCGACAAGCAAGAATCCGCGTTGTCGGACTTGCTATGAGACTGCAAACAATTTGTATCCACTGCAAGACAAAACGGCGGAACAGAAATCTCTGGCGGAGATCCTACTGGACATAGCAAAAATTGATGTTCGTACCACGACAGAAAATGTGGAATCACTGCCAAAGCATATCTGTGGAAACTGCAGCAGGAAGCTTAAAAACGCCCACTCGTTTGTCCAGCAGGCGCAACGCGTTAATGCACGTTTGTTGGCTAGTCTACATGGTACAACTGATAACAAACACTTGGATTGTCTGCTGGAGGCGCCCATCGAtataccaacaacaaatgtcAATGACTGCCTACAAATTAAGATGGAAACCAGCGATTTTGGAGATGAAAGCCTTTATACTTTACCTACTGTGGTAGATGAAGCTCTGCCAAAAATTGATGTTGGTGTAGTATCGCTGGAGAAGAGTGAAAATGGCAACACTGTCAATCGTGCGTTGAAGCAAGAAGATGAATTACCAGCTAGCAGTGTTGTGGAGCAGCATGCAGGTGATTATTcaaaatttgACCCCATAACACTTGCTGACACAGACCTATCACAAGGGGAGGAGGCGGAAGATCAAAATGATGCTGATTTTATACCAGACCATAATGATAGTGATTCGCAGCACTTTGAGGAGGATGTGGCTGCTAAATCACCTATACGCAAACGTCGTGGACGCCCTCGTGGACGTCCTCGAATggcaactcgttttgaaatgtataGCAGCAGAAATAAAGATGGCAGACACACTTGCGATGTGTGTAATAAAACATTCGCTTGGCAAAAGGATCTCAGCAGACATGCGAAGTCCCATTTTGCAGCGGCCGAGTATGAATGTGAACACTGTGAGCGCCGGTTCATACGTAAAGACAAACTCAATGATCATATAAAGACACATCGAAAGAAAGGTGTAAGCTTAAGCGATGACACAACTGCAACCAGCAGCTCAGGAAACAAGAGCTACGCATTGCGTGCGCCACGACATCCGGAATGGACATTTGCAGAACGTCTGTACACAGAAAAACCCTTCCGTCTCATGGAGTGTAAGTTGTGCGCCGATAAATACAGCCGCACGGAAGCGCTGCGTCAGCACATGCTGCTGCATACAGACCCGGCAACCATTGCGCTGCAAATAGAGAGTGAAGTGGTAAAGGAGCTATTCCCACAGTCACAGCAGCTTGACGAAATAAAGGCGAGCATCAGCGAGGATATTTCAGAACAACGTTTTGCCAAATACTATGCCGTCGTTAATGAGTACGGCTACGAGATGGGCCTTAGTGACTCGGATGGTAATGACGTTGAGGTTAACGCTCCAATGTACCGTTGCGAGCTGTGTCACGAGGAGTTCGCGCGTAAACACCAGGTCTTTACGCACACCAAAGCAGAGCATGCAGCTGGAGAACTGCCGCACAAGTGCAACGtttgcaAAATGGGCTTCGTCTGTAAGCAGATGTATCAGTTGCACAGTCGCTCCCAGTGTCGCAGCAGGGAGAAAAAGTACCAATGTTTGAAATGTCCCGGCAAGTTTATGTGGCTGGAGAATCTGGAGGGGCATCAGTGCGCGAATCGATTCAATACACCTGCGTACAAGGCAAAACTGCCGCGCAGCCGCGTGTTGCAGTGTGGCATTTGCGACAAAACCTTCATGTGGGCGAAGGACCTCAATCGCCACAAGGAGACGCACGAAGCCGATGGCAGCCTGCACGATTGTGCCATCTGCTTCCAGCGATTCCTCAAAGCGGACAATTTACGACAACACATGCGACAGGCGCACGAGCAACTCAAGCGACGGTTGCAGTGTCGCCTCTGCGAGCAAAAATGCTCGAGTTTGTGCGAGCTGCGGGGACACATGCAACAGCATGCCGATGGAATCACTGGCGTCAATACGGCCGAAGGGCATTACTTCAAGTTGCACTTCCCAGAGGGTTGTGCGGAACGCGCGGGAGAGTTGGCCATTAGCATTGCGACGAATTTTGCCGCCAACAGAACAGCGTGCTACTATACCGCTATGGATGAGAGTGGCAATGAGTTGGACATATGCGACTCCGAAACGGACACAGGCGAGATGGTGAGCGATACTAAAGTGGAGGACCAAACGTCTGCACGAGCCCAGCAGTATGCCTGCGATTTATGCGGCGAAGTTTTTCACAGACTCAAACGCATGCTGCTACACCAACAGAGCTCGCATAGCGAACTAGCCAGTGCCTGGCCGCATGCCTGCACTGAGTGTCCCAAGCGATTTGTCTGTTTGGCACTGCTGCAGCAACATCTGCAGCGTGACTGCTTGAATGAGCAACGGAAGCTGCAGTGCGACAAGTGCCCGGCGCGTTTCGTGTGGCAGGAGAATCTGGAGTTGCACACACAGTTGAAGCACATTGATCCCGAGCAGCAGATCAGTCGCCAATTGGCCAACAAGCTGCAGTGTGATCAGTGCGATAAGGTATTCATTTGGCCGAAGGATTTGACCCGCCACAAGCGCATACACATGCCCGAcgatgaaaaatatgaatgtcCGATGTGTGACCGTAAATTCAATCGCAAGGACAACATGCACTCCCATATGAAGGTGCATGGCGTGGAGGCCACGACGAACGTAAAGCGGGAGGCGCTGCGTAATGCAGCGAATAAAGTATCAGCTGTCGATGAGTTTTTGTGCAAACGCAATGGCTGCAAGCTAATACAGTGCATGATTTGTCTCTCCAAACACTCGAAAATATCTGACCTGCGCACGCATTTGCGCACACATCAGTATCTTGTCTCCTTTGCACTACGCACAGAGCCCATTGAGGAAATCTCAACGCAGCTGTACCCAGACGAACGACCCATGCCGGAGGATGCGTTGCGCAAGCGCATTATCGAAAATGTGGCCGCACAACAGCTGGAATCATTTTACCTAATTACCAATGAATTTGGCTATGAGTTGAGCTTGGACAGTTCCgaaacagaaagtgattctgaagGCGAGGAAAATTCAGCTACATTGAAACACTTGGAGGGCAGTTTGCGACGCAGCTACGCCTGTGATTTGTGTGGTATTTCCTTTTCACGCAAATATAAACTGTACAAGCATCAGCAGAGCTCACACGAGTGGGATGAGGCACCGCACACTTGCACCTACTGTCAAGCTCGTTTCCTTTCGGAGGAATTTTTGCAGTTTCACTACGAGAAGCAGTGCAAAAATACGCGCAAACGTTTCGTCTGTCGCAAATGTCCGCACAGATTTATGTGGAAGGAGAACTTGAAGGAACATTTGCGCACCAAGCATGAGGCGGCAGAGGAGAATGTGAAGAAGGTTGATGTGCCAGCACAACCCTTGGTATGCTCAGAGTGCCCACGCACCTTCCGCATGCAGAAGGATCTCACGCGTCACATGATCACGCACCGCAGCGACTTGCTCATCTACAAATGTCTCTGGTGTCCGCGCAAATTTTATCGCCAACAGAATCTGCACATGCACATTAAACGGCATGACATAACAATGGAACAGCTCAGCGCCGCAGAGTGTCACATGAAAGCGACAAATGGTCCCAACGGCCGCAAACAAATCTGCTGCAAAGTGTGCAATGTGCAATTTAGTAATGTTGCGGCACTACGTGCCCATTTGCTGCAGGAGTCCGCCTCCGCGCTGACGTCACATCACGATCACACCTCCTTGCTCAATTATTCCATCACAAACGAGCTGGGTTTCGAACTGCAGCTGGGCGACTCCGAAACGGAGGACGAAGCTGACACGTGCCGCAGCTACACGTGTGAGGAGTGCCACCTGACTTGCAAGCGCAAATACGAATTGGCACAACACCAGCGCTCCATACACAAGCATGAGAATTTACTGCTGAGATGCGACCGTTGCGTTTTTCGCACAGTCTGTAAGGAGATATTGGTGCATCACATGAGCACACAATGCTACAACACCGCCAAGGAGTTTCAGTGCACGAAATGCTCCTTTAGATTCATGTGGCAAGAGAATCTGGAAACTCACATGCGTCTATTACATCCGCCACAGGAGGAGAATAGCTGTGATACTGCATCGAATTCCAACGAAGCCAAAGCCAATACTGGTGCTGATGCAGCTCCAACAACTTCACGACTATTCCATTGTGACAAATGCAACCGCAAATACAATCGTAAGGATCGTCTCACAGCGCACATAAAAAAAGTGCACACTAATGGCAACACTTCCGCAAAGGCTGCAGCCTTTCAAATTGATCCTGTCACGGGGgagaaaaagtttaaaacgCTGCCTGAGAAGaagtttttgtgtgctttcTGCGGACGTGCTGTGACCTCCTCGTCGAACCTGATCATACATATGCGCAGACATACAGGCGAGAAGCCGTTCAAATGCGAATTCTGCGATATGGCTTTTCCGCGCTCCTCCGATCTGTCATGTCATCGACGCAAGCATACCGGCGAAAAGCCGCACAAATGCACGGTCTGCGACAAGGCCTTCTCGCGATCCTACAAACTACATACCCACATGCGAGTGCATTCTGGCGAGCGGCCCTACAAGTGCACCTATTGTGACAAAAGCTTCGCGCAGTCCAACGACTTGACGCTACACATACGCCGGCACACCGGAGAGCGTCCTTACGTCTGTGGCGTTTGTGGTGAACGCTTTATACAGGGTACAGCTCTAAAAAATCACCGTACCATGCGCGGGCATTACGAAGACGTGGAGCCCCGACGTGGCACAATACTGGAGCAGTTTTAG
Protein Sequence
MATNLRGAATSKNPRCRTCYETANNLYPLQDKTAEQKSLAEILLDIAKIDVRTTTENVESLPKHICGNCSRKLKNAHSFVQQAQRVNARLLASLHGTTDNKHLDCLLEAPIDIPTTNVNDCLQIKMETSDFGDESLYTLPTVVDEALPKIDVGVVSLEKSENGNTVNRALKQEDELPASSVVEQHAGDYSKFDPITLADTDLSQGEEAEDQNDADFIPDHNDSDSQHFEEDVAAKSPIRKRRGRPRGRPRMATRFEMYSSRNKDGRHTCDVCNKTFAWQKDLSRHAKSHFAAAEYECEHCERRFIRKDKLNDHIKTHRKKGVSLSDDTTATSSSGNKSYALRAPRHPEWTFAERLYTEKPFRLMECKLCADKYSRTEALRQHMLLHTDPATIALQIESEVVKELFPQSQQLDEIKASISEDISEQRFAKYYAVVNEYGYEMGLSDSDGNDVEVNAPMYRCELCHEEFARKHQVFTHTKAEHAAGELPHKCNVCKMGFVCKQMYQLHSRSQCRSREKKYQCLKCPGKFMWLENLEGHQCANRFNTPAYKAKLPRSRVLQCGICDKTFMWAKDLNRHKETHEADGSLHDCAICFQRFLKADNLRQHMRQAHEQLKRRLQCRLCEQKCSSLCELRGHMQQHADGITGVNTAEGHYFKLHFPEGCAERAGELAISIATNFAANRTACYYTAMDESGNELDICDSETDTGEMVSDTKVEDQTSARAQQYACDLCGEVFHRLKRMLLHQQSSHSELASAWPHACTECPKRFVCLALLQQHLQRDCLNEQRKLQCDKCPARFVWQENLELHTQLKHIDPEQQISRQLANKLQCDQCDKVFIWPKDLTRHKRIHMPDDEKYECPMCDRKFNRKDNMHSHMKVHGVEATTNVKREALRNAANKVSAVDEFLCKRNGCKLIQCMICLSKHSKISDLRTHLRTHQYLVSFALRTEPIEEISTQLYPDERPMPEDALRKRIIENVAAQQLESFYLITNEFGYELSLDSSETESDSEGEENSATLKHLEGSLRRSYACDLCGISFSRKYKLYKHQQSSHEWDEAPHTCTYCQARFLSEEFLQFHYEKQCKNTRKRFVCRKCPHRFMWKENLKEHLRTKHEAAEENVKKVDVPAQPLVCSECPRTFRMQKDLTRHMITHRSDLLIYKCLWCPRKFYRQQNLHMHIKRHDITMEQLSAAECHMKATNGPNGRKQICCKVCNVQFSNVAALRAHLLQESASALTSHHDHTSLLNYSITNELGFELQLGDSETEDEADTCRSYTCEECHLTCKRKYELAQHQRSIHKHENLLLRCDRCVFRTVCKEILVHHMSTQCYNTAKEFQCTKCSFRFMWQENLETHMRLLHPPQEENSCDTASNSNEAKANTGADAAPTTSRLFHCDKCNRKYNRKDRLTAHIKKVHTNGNTSAKAAAFQIDPVTGEKKFKTLPEKKFLCAFCGRAVTSSSNLIIHMRRHTGEKPFKCEFCDMAFPRSSDLSCHRRKHTGEKPHKCTVCDKAFSRSYKLHTHMRVHSGERPYKCTYCDKSFAQSNDLTLHIRRHTGERPYVCGVCGERFIQGTALKNHRTMRGHYEDVEPRRGTILEQF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-