Ncom014348.1
Basic Information
- Insect
- Neria commutata
- Gene Symbol
- lola
- Assembly
- GCA_963457695.1
- Location
- OY735247.1:42781089-42783889[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.8 1.5e+04 -3.7 0.8 6 21 255 273 255 275 0.69 2 2 3.4e-11 5.5e-08 32.8 0.0 3 45 453 495 451 495 0.90
Sequence Information
- Coding Sequence
- ATGGGTGGCCCACCGCCGCTGCCGCTCACCGAGGGCCAGACCTATTGCCTGCGCTGGAACAATCACAAGTCGAATCTGGTGGAGATACTGGATGCGCTCATCAAGGTCGAGAGCTACGTGGACTGCACCATTGTCGTCGACGATCAGGTGCAGTTCAAGGCGCACCGCGTCGTGCTGGCCGCCAATTCGCCATATTTCCAGACCATACTGCAGGACGTGCCCATGGACCACTGCAGCATCATATTCCCCGGCGTCAAGGCGTTCGAGATGCGCGCGCTCCTGGAGTACATGTACACGGGCGAGGTGAATGTGACGCAGAGCCAGATACCGAAGATCATGCGCATCGCCGAGGAGCTCGAGGTGAAGGGTCTCTTCGACATGGCCGATCTGAAGGAGAAGTTCAATAAGCTGGGCGAGGAGCATGCCGAACGCAACCCCTATGCGAGCAGCAGTGGCGGTATTCCCAACGCATCCATATACGCCGCCGCCAGCGCGGCCATGCCATCCTCGTCCAGTGTGGCGCAGAATGGCGGCAAGGACAGCAGCGACGCGCAACACCAGCAGCCACACCAGCCGCAGAATTCCTCATCCGTGATCTCAACCTCTACGAATATTTCGCCATCGGCCGCacccagcagcagctgctcgcCACCCTACGGCAGCTACAAGTCGCCGTACGCGAATCTGTACTCGAAGTCGCCGGGTCCGGGTCTGGCGGCCAGCAGCTCAGCGCAGTCATCAGCCATTGCCGCcagcgccgccgccgccgccgctgccgcagtTGTGGCCGCCAGCACAGCTCAAACGTCGACACACCACACGCAGTCGTCGTCCACCTCACAGCAGTCGAGTGCGGAGCGTGGCGCTGCTGGCCAGTGGCCACTCTCGCCAtccgccgctgccgccatgCTGAGCTCCGTCTATGAGTCCGCGCCCGACATGAATCCGCTCAAACGCAAGAAGCTCTCGTCCATCTCCAGCATGCTGATGAACCGCGACACGCCCATTTTGCGCAATGTGCTCGCGCAAACCAACCCGGCCGACTCCTCGCAGCccatgccgctgctgctgcccggCAGCGCCGCTGCTGCGAAGAGCGAGAAACACGCGGCGGACAAGAACTCGACACACGTGGCTGCGCTGGTGGCGGgtgcgcacaacaacaatcacacaTTCAACGGCAGCGACTACAGCAGCGACAAAAAGTACCACGACGAGCCGCACTCCCCCTACACAGATCGCTCCTTCGAGGACGACAGCTTCGACCAGAAGGGCAACTACAGCGGCAGCGGCTTCGGTTCGAACTCCTCCGCCAACCAGAAGCCGGAATGGAAGCGCTACAAGCAGTACACACGCAACGACATCATGTCCGCCATACAATGTGTGCGGGACGGCATGAGCGCGCTGCAGGCGTCTCGCAAGTTCGGTGTGCCCTCGCGCACGCTCTACGACAAGGTGAAGAAGCTGGGCATCACCACCGGCCGTCCCATGAACCGCACCATGAAGCGCAGCCCGAGCAGCGTCGAGTCCTCGGCCGCATTCCCCTATGCGCACGGCTATGGCCAGCCGGAAACGTCGGCGCTGCTGTCGTCCATGCACGAGCGCGAACGCGAGCGGGACGAGCGCGGCGAGCCGAAGGAGCATCATCGCGCGGAGCATCATCACATGCCGCCGACCATACCGCATCCGGCGGCAGCGCTGCTGGACCATGCCTTCCTGCAACAGGCGCTGGAGAACCGTGGCGGCGACATAGCTGGACGAGAGGCGCTGCACGCCATGGCACTAGCCGCCGCTGCGCATGCAGCTGCAAACCGCTTGTCCAGCAGTCCCGGGCCGAACGGCAATGTCGGCCGACGCACGCCCAGTCCACCGCCGAGTTTCAGCATGAAGTACGCGCCGCGGCCTAGCGAACACGAGATGCTGCTGGAGCACGAGAAGGAGCGGCGTCTGTTGGACAGCGAAATGGCTGAGCGCGAGCAGGACATAGAAATGGAGCGGCAGCGCGAGCACGAGCTGAGTCGAGAGCGTGTGCGTGAGCGTGTGCATCTGGAGCGTGAACGGGAACGAGCGCATGAGCATGAGGAGGGCGAACGCGATGCGGACGACGAAGAGGACGACCATGTGGAGGATTTGTCGGTGGCGCGTAAGGACTCCTTTTCGCCGGAGAGCAGACGCGCGGACTCGCCCTACTCGCCGCCgcccgcagcagcagcgttgcCCGTCAGCGCTGAGAATGGCAGCGGTGTAATTGTGCCGCCGATGCATGCCAGCAGCAAACTGCCAACCACACCAACAGCAACCGCAACGGCAGCGGCGAGTCCGGCCGGCGCAGCCGCAACGGCtgccaacagcagcggcagcagtgaCGAGCTCATGGACGAGTCAACACTGAAGCGGGAAATCGTCAGCGATGATGGCCGCGCCGACTGA
- Protein Sequence
- MGGPPPLPLTEGQTYCLRWNNHKSNLVEILDALIKVESYVDCTIVVDDQVQFKAHRVVLAANSPYFQTILQDVPMDHCSIIFPGVKAFEMRALLEYMYTGEVNVTQSQIPKIMRIAEELEVKGLFDMADLKEKFNKLGEEHAERNPYASSSGGIPNASIYAAASAAMPSSSSVAQNGGKDSSDAQHQQPHQPQNSSSVISTSTNISPSAAPSSSCSPPYGSYKSPYANLYSKSPGPGLAASSSAQSSAIAASAAAAAAAAVVAASTAQTSTHHTQSSSTSQQSSAERGAAGQWPLSPSAAAAMLSSVYESAPDMNPLKRKKLSSISSMLMNRDTPILRNVLAQTNPADSSQPMPLLLPGSAAAAKSEKHAADKNSTHVAALVAGAHNNNHTFNGSDYSSDKKYHDEPHSPYTDRSFEDDSFDQKGNYSGSGFGSNSSANQKPEWKRYKQYTRNDIMSAIQCVRDGMSALQASRKFGVPSRTLYDKVKKLGITTGRPMNRTMKRSPSSVESSAAFPYAHGYGQPETSALLSSMHERERERDERGEPKEHHRAEHHHMPPTIPHPAAALLDHAFLQQALENRGGDIAGREALHAMALAAAAHAAANRLSSSPGPNGNVGRRTPSPPPSFSMKYAPRPSEHEMLLEHEKERRLLDSEMAEREQDIEMERQREHELSRERVRERVHLERERERAHEHEEGERDADDEEDDHVEDLSVARKDSFSPESRRADSPYSPPPAAAALPVSAENGSGVIVPPMHASSKLPTTPTATATAAASPAGAAATAANSSGSSDELMDESTLKREIVSDDGRAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01055329;
- 90% Identity
- iTF_01055329;
- 80% Identity
- iTF_01055329;