Ncom014975.3
Basic Information
- Insect
- Neria commutata
- Gene Symbol
- bab1
- Assembly
- GCA_963457695.1
- Location
- OY735248.1:2118642-2120348[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.6e-17 2.6e-14 53.1 0.0 1 43 56 99 56 101 0.95 2 2 3.7 6.2e+03 -2.5 2.8 4 25 201 225 198 226 0.73
Sequence Information
- Coding Sequence
- ATGCTGGAGAACTCACACACTTGGATGGGTGGCGCCGCCGGCTCCTCCATAGCAGCAGACAGCTACCAGTACCAGCTGCAGTCCATGTGGCAGAAGTGCTGGAACACCAACCAGAATCTCATGCACCACATGCGCTTTCGCGAGCGCGGCCCACTCAAGTCCTGGCGGCCCGAGACCATGGCCGAGGCCATCTTCAGCGTGCTCAAGGAGGGCCTGTCACTGTCGCAGGCCGCACGCAAATACGACATTCCCTATCCGACGTTCGTGCTGTACGCGAATCGCGTGCACAACATGCTGGGACCCTCCATCGACGGCGGCCCCGACTTGCGGCCGAAGGGGCGTGGTCGGCCGCAGCGCATACTACTCGGCATTTGGCCGGACGAGCACATCAAGGGCGTCATCAAGACGGTGGTGTTTCGCGACACGAAGGACATAAAGGACGACAGCATGCAGCACATGCCCTACGGCCGCCACTCGCCCATTTTTCCGTTTCAGGATGCGTCGCTCAATTACGCCGGCGTGGGTGGCGGCGGCACTGGCGGCCCCTGCCCCAATGGCATGCCCATGCCCACGCCCACCGGCGACCAGATGTCGCAGGAGGCGACCGCAGCGGCTGTGGCCGCCGTCGCACACAACATACGGCAGCAGATGCAGCTGGCCGCCGCCGCACAGCACCACCACCCGGAGAGCGCCGCCGGCGGGCCAAACCTCTTCAGTCTGCCGCCACATTTGCAGGTGCCCGGCCCCAGCGGCATGGCACTGCCCAAGACGAGCCTATCGCCTGCGCTGAGCTCCGCCTCAAATGCGGCAGCCAGCGCCGCCATGCTCGGGCCACGCCACGCGCCCTCGCCCTGTGGCTCCGCCGGCCTGCCGGGTCTGCCCAATCTGCCGCCCAGCATGGCGGTCGCGCTGCAAATGGCGGGCGGGCCCGGCGCGCGTTGCGACCCCGCCGCCGCTATGTtgagccagcagcagcatcagctgcagcagctgcatctgcaacagcagcacgcGGCTCTGCaccaccagcaacagcaacaacaacaacaacaccacgCGCATGGCTATGGCTCCAGTTCCATGTTACATCCGTCGGCTTCCGCATCCGCCACAGCAACGGccacggcaacagcaacagccacctccgcacaacagcaacaacagtcgGGCAGTTCCTCCCACACGAAATCGAAATCGTGCTCTGCCTCCCCAGCGCCAGAGCGCCGTCGCAGCAGTCCGACACGCGACACGCCGCAACACTCGCCCCTCACCGAACTCGCGCTGGACATGGGCGGCTACAAGTCGGCGCGCAGCTACTCCCCGGCGCGTCTCTTCGCCGAGGACATTTCCGAATTGGTGGGCGTGATGCCGCCTTCCTCCAGCAGCGGCGTTGGCTCCTCGGCCGCTTCCACCACTACCACCAACGCTTCCGCCGCCACGGCGTCCGTTTCTTCCGCTTCAACTGGCGGAGGTGGCGGTGGGGGTGGCAGCAGCATCAAACTGGAGCCCATCACCAGCAGCGGTGAATAA
- Protein Sequence
- MLENSHTWMGGAAGSSIAADSYQYQLQSMWQKCWNTNQNLMHHMRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSIDGGPDLRPKGRGRPQRILLGIWPDEHIKGVIKTVVFRDTKDIKDDSMQHMPYGRHSPIFPFQDASLNYAGVGGGGTGGPCPNGMPMPTPTGDQMSQEATAAAVAAVAHNIRQQMQLAAAAQHHHPESAAGGPNLFSLPPHLQVPGPSGMALPKTSLSPALSSASNAAASAAMLGPRHAPSPCGSAGLPGLPNLPPSMAVALQMAGGPGARCDPAAAMLSQQQHQLQQLHLQQQHAALHHQQQQQQQQHHAHGYGSSSMLHPSASASATATATATATATSAQQQQQSGSSSHTKSKSCSASPAPERRRSSPTRDTPQHSPLTELALDMGGYKSARSYSPARLFAEDISELVGVMPPSSSSGVGSSAASTTTTNASAATASVSSASTGGGGGGGGSSIKLEPITSSGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -