Ncom014983.2
Basic Information
- Insect
- Neria commutata
- Gene Symbol
- bab2
- Assembly
- GCA_963457695.1
- Location
- OY735248.1:2291044-2292788[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.3e-17 3.8e-14 52.6 0.0 1 43 60 103 60 105 0.95
Sequence Information
- Coding Sequence
- ATGCAGGCCAAGATGATCGAAGGTGGACATCCTTGGATGGGTGGCGCATCCACCTCATCTGTAGCGGACAGCTATCAATACCAGCTGCAGTCCATGTGGCAGAAGTGCTGGAACACCAATCAGCAGAACCTCGTGCAGCAATTGAGATTTCGTGAGCGCGGCCCATTGAAGTCGTGGCGTCCGGAAGCCATGGCCGAGGCCATTTTCAGCGTGCTGAAGGAGGGTCTCTCGTTGTCGCAGGCCGCGCGCAAATTCGACATACCCTATCCGACCTTCGTGCTATATGCGAATCGTGTGCACAATATGCTGGGTCCCTCCCTGGATGGCGGCGCCGATCCGCGTCCAAAGGCGCGCGGACGTCCGCAACGCATACTGCTGGGCATGTGGCCGGAGGAGCTGATACGTTCGGTCATCAAGGCAGTCGTTTTCAGAGATTATCGCGAGATCAAGGAGGACATGAGCCATGTCTATGCCAATGGACAAGCGCATGCGCAGTCGCCGTACGGTGCCGCTGCCAATTCGGCAGCCGCTGCCAATGGCTACCACAACGCTGCCAAACTGGCCGCACAGAATGCCGCCTTGGCACCGGCCGACTCAGCCAGTCCGCTCTCTACCATGACCGAGACTTTGCGGCGCCAGATCatgtcgcagcagcagcagtcgcccATTTCACAGACGATGAACATGTACAAGTCGCCGGCGTATTTGCAGCGCTCCGAAATCGAGGATCAAGtgtcggcagcagcagccgccgccgcagccGTCAAGCAGCAGGCGGAGCGTCGCGGCTCCGAAAATCTGGCCGATCTGAGCGCGTTGGGCGGCCTCATGGGCATACCCGGGCTGAATGTGATGCCAGCGCAGGCGCAACGCGGCGCCAGCCAACTGCATCAGAGTGCGGCGGCCTATCAGCGTGAGCGCGAGCGAGAACGAGAGCGAGAGCGCGAGCGGGAACGCGAAAGAGAACGCGAACGTGAGCGGGAGCGTGAGCTGAAGGAGGCCATGCAGGCGCGCCAGTATGGCAATCAGTCGCGCGGCTCCTCCGCCGGCAGCAGCACACAGAAGCAGAGTGGCAGTGGAGGCGCTGCTGCAGGCACCGGTGCCGTCTCACCTTACCAGCACTTCAAGAGCAAGGACCATCCCAACTACGCATATAACAAACGCTTTCTGGAGAGTCTGCCGCCGGGCATCGACTTTGAGGCGATTGCCAACGGCCTGCTGCAGAAGTCGGTGAACAAGAGTCCCCGCTTCGAGGACTTCTTTCCCGGCCAGGACATGAGCGAGCTGTTCGCGAACGCCGAGAGCACGGCCCCGGGTGCCGGCTATGCGTCGGCCCAAGTGCGCGAATCGCCGTTAATGAAGATCAAGCTGGAGCATCAGGGCGCCGCCGAGGTGCCGCACGAGGATTAA
- Protein Sequence
- MQAKMIEGGHPWMGGASTSSVADSYQYQLQSMWQKCWNTNQQNLVQQLRFRERGPLKSWRPEAMAEAIFSVLKEGLSLSQAARKFDIPYPTFVLYANRVHNMLGPSLDGGADPRPKARGRPQRILLGMWPEELIRSVIKAVVFRDYREIKEDMSHVYANGQAHAQSPYGAAANSAAAANGYHNAAKLAAQNAALAPADSASPLSTMTETLRRQIMSQQQQSPISQTMNMYKSPAYLQRSEIEDQVSAAAAAAAAVKQQAERRGSENLADLSALGGLMGIPGLNVMPAQAQRGASQLHQSAAAYQRERERERERERERERERERERERERELKEAMQARQYGNQSRGSSAGSSTQKQSGSGGAAAGTGAVSPYQHFKSKDHPNYAYNKRFLESLPPGIDFEAIANGLLQKSVNKSPRFEDFFPGQDMSELFANAESTAPGAGYASAQVRESPLMKIKLEHQGAAEVPHED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01404806; iTF_00257737; iTF_01132842; iTF_01470429; iTF_01378316; iTF_00979281;
- 90% Identity
- -
- 80% Identity
- -